MGE detailed information
MGE type: Conjugative plasmid MGE length: 87354 bp
Accession: NZ_CP035469 Location: 1..87354 Organism: Escherichia coli strain U12A Replicon: plasmid pU12A_B
Accession: NZ_CP035469 Location: 1..87354 Organism: Escherichia coli strain U12A Replicon: plasmid pU12A_B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U12A_RS01025 () | 338..796 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| U12A_RS01030 () | 793..1611 | + | 819 | WP_000646098.1 | hypothetical protein | VF |
| U12A_RS01035 () | 1608..2756 | + | 1149 | WP_125075212.1 | putative protein YggR | VF |
| U12A_RS01040 () | 2753..3043 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| U12A_RS01045 () | 3058..3609 | + | 552 | WP_000014583.1 | Phospholipase D | VF |
| U12A_RS01050 () | 3699..7466 | + | 3768 | WP_129765215.1 | DNA primase | - |
| U12A_RS01055 () | 7484..7831 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| U12A_RS01060 () | 7828..8520 | + | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| U12A_RS01065 () | 8531..9514 | + | 984 | WP_001191877.1 | hypothetical protein | VF |
| U12A_RS01070 () | 9517..10806 | + | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| U12A_RS01075 () | 10806..11510 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| U12A_RS01080 () | 11510..12037 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| U12A_RS01085 () | 12088..12492 | + | 405 | WP_129765216.1 | IncI1-type conjugal transfer protein TraR | - |
| U12A_RS01090 () | 12556..12744 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| U12A_RS01095 () | 12728..13030 | + | 303 | Protein_14 | conjugal transfer protein TraT | - |
| U12A_RS01100 () | 13060..14673 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| U12A_RS01105 () | 14704..15054 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| U12A_RS01110 () | 15051..15476 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| U12A_RS01115 () | 15562..16068 | + | 507 | Protein_18 | IncI1-type conjugal transfer protein TraT | - |
| U12A_RS01120 () | 16158..19202 | + | 3045 | WP_001024786.1 | IncI1-type conjugal transfer protein TraU | - |
| U12A_RS01125 () | 19202..19816 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| U12A_RS01130 () | 19783..20985 | + | 1203 | WP_001385654.1 | IncI1-type conjugal transfer protein TraW | - |
| U12A_RS01135 () | 21014..21598 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| U12A_RS01140 () | 21695..23863 | + | 2169 | WP_125075213.1 | DotA/TraY family protein | - |
| U12A_RS01145 () | 23937..24587 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| U12A_RS01150 () | 24659..24868 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| U12A_RS27475 () | 25260..25436 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| U12A_RS01155 () | 26095..26346 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| U12A_RS01160 () | 26418..26570 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - () | 26625..26682 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 26625..26682 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 26625..26682 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 26625..26682 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| U12A_RS01165 () | 26862..28070 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| U12A_RS01170 () | 28089..29159 | + | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| U12A_RS01175 () | 29152..31443 | + | 2292 | WP_001289276.1 | hypothetical protein | - |
| U12A_RS01180 () | 31480..34179 | - | 2700 | WP_001360283.1 | Protein TraI | Relaxase |
| U12A_RS01185 () | 34190..34522 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| U12A_RS01190 () | 34756..35091 | + | 336 | WP_000157096.1 | hypothetical protein | - |
| U12A_RS01195 () | 35175..36023 | - | 849 | WP_129765217.1 | DUF4942 domain-containing protein | - |
| U12A_RS27690 () | 36372..36569 | + | 198 | WP_001161115.1 | hypothetical protein | - |
| U12A_RS01210 () | 36603..36854 | + | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| U12A_RS01215 () | 36885..37082 | - | 198 | WP_001348086.1 | hypothetical protein | - |
| U12A_RS01220 () | 37105..38031 | - | 927 | WP_015059305.1 | Recombination-promoting nuclease RpnA | VF |
| U12A_RS01225 () | 38096..38362 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| U12A_RS01230 () | 38455..38889 | - | 435 | WP_000218862.1 | hypothetical protein | - |
| U12A_RS01245 () | 39622..40122 | - | 501 | WP_129765218.1 | antirestriction protein ArdA | - |
| U12A_RS01255 () | 40584..41180 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| U12A_RS01260 () | 41177..41896 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| U12A_RS01265 () | 41893..42327 | - | 435 | WP_000845903.1 | conjugation system SOS inhibitor PsiB | - |
| U12A_RS01270 () | 42382..44340 | - | 1959 | WP_129765219.1 | ParB/RepB/Spo0J family partition protein | - |
| U12A_RS01275 () | 44399..44632 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| U12A_RS01280 () | 44690..45217 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| U12A_RS01290 () | 45570..45851 | - | 282 | WP_154671919.1 | hypothetical protein | - |
| U12A_RS01300 () | 45989..46180 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| U12A_RS01305 () | 46177..46599 | - | 423 | WP_129765220.1 | DUF1380 family protein | - |
| U12A_RS01310 () | 46646..46948 | - | 303 | WP_001589340.1 | antirestriction protein | - |
| U12A_RS27695 () | 47486..48265 | - | 780 | WP_207213211.1 | hypothetical protein | - |
| U12A_RS01325 () | 48311..48745 | - | 435 | WP_129765221.1 | DUF1380 family protein | - |
| U12A_RS01330 () | 48757..48978 | - | 222 | WP_077170477.1 | hypothetical protein | - |
| U12A_RS01335 () | 48979..49662 | - | 684 | WP_000086147.1 | DNA methylase | - |
| U12A_RS01340 () | 49738..50043 | - | 306 | WP_032170510.1 | hypothetical protein | - |
| U12A_RS01345 () | 50047..50949 | - | 903 | WP_207213212.1 | DUF1281 domain-containing protein | - |
| U12A_RS01360 () | 51630..52022 | - | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| U12A_RS01365 () | 52026..53000 | - | 975 | WP_001217836.1 | hypothetical protein | - |
| U12A_RS27480 () | 53240..53614 | - | 375 | WP_000752652.1 | hypothetical protein | - |
| U12A_RS01375 () | 53614..54246 | - | 633 | WP_000312331.1 | ParA family protein | - |
| U12A_RS01380 () | 54848..55633 | - | 786 | WP_001596998.1 | site-specific integrase | - |
| U12A_RS01385 () | 55635..56048 | - | 414 | WP_000465043.1 | hypothetical protein | - |
| U12A_RS01390 () | 56617..56874 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| U12A_RS01395 () | 56874..57464 | + | 591 | WP_000194576.1 | hypothetical protein | - |
| U12A_RS01400 () | 57484..57831 | - | 348 | WP_000142451.1 | hypothetical protein | - |
| U12A_RS01405 () | 57960..58295 | + | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| U12A_RS01410 () | 58317..60197 | - | 1881 | WP_116979016.1 | colicin | - |
| U12A_RS01420 () | 60476..61822 | - | 1347 | WP_001132033.1 | hypothetical protein | - |
| U12A_RS01430 () | 62176..62778 | + | 603 | WP_000517692.1 | hypothetical protein | - |
| U12A_RS01435 () | 62834..63343 | + | 510 | WP_000045394.1 | hypothetical protein | - |
| U12A_RS01455 () | 64412..65443 | - | 1032 | WP_000907863.1 | replication initiation protein | - |
| U12A_RS01470 () | 66416..66679 | + | 264 | WP_001324596.1 | ash family protein | - |
| U12A_RS01475 () | 66597..66884 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| U12A_RS01485 () | 67326..67859 | + | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| U12A_RS01495 () | 68113..68796 | + | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| U12A_RS01500 () | 68810..69376 | + | 567 | WP_000776428.1 | hypothetical protein | - |
| U12A_RS01510 () | 69644..69898 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| U12A_RS01515 () | 69941..70393 | + | 453 | WP_000008892.1 | hypothetical protein | - |
| U12A_RS01525 () | 71067..72134 | + | 1068 | WP_000742600.1 | hypothetical protein | VF |
| U12A_RS01530 () | 72134..72571 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| U12A_RS01535 () | 72585..74267 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| U12A_RS01540 () | 74260..75555 | + | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| U12A_RS01545 () | 75542..75994 | + | 453 | WP_001247336.1 | hypothetical protein | VF |
| U12A_RS01550 () | 76005..77558 | + | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| U12A_RS01555 () | 77571..78668 | + | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| U12A_RS01560 () | 78686..79300 | + | 615 | WP_129765223.1 | hypothetical protein | VF |
| U12A_RS01565 () | 79310..79870 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| U12A_RS01570 () | 79855..80511 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| U12A_RS01575 () | 80511..81935 | + | 1425 | WP_001389385.1 | hypothetical protein | VF |
| U12A_RS27700 () | 81932..82129 | - | 198 | WP_032159596.1 | hypothetical protein | - |
| U12A_RS01600 () | 83240..84394 | + | 1155 | WP_001139957.1 | integrase | - |
| U12A_RS01605 () | 84545..85369 | + | 825 | WP_001238939.1 | hypothetical protein | - |
| U12A_RS01610 () | 85454..86656 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| U12A_RS01615 () | 86716..87300 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|