MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93876 bp
Accession: NZ_CP035302 Location: 1..93876 Organism: Salmonella enterica subsp. enterica strain ST1539 Replicon: plasmid pST1539
Accession: NZ_CP035302 Location: 1..93876 Organism: Salmonella enterica subsp. enterica strain ST1539 Replicon: plasmid pST1539
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ST1539_RS24145 () | 196..921 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| ST1539_RS24150 () | 1182..1832 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| ST1539_RS24155 () | 1959..2383 | - | 425 | Protein_2 | IS200/IS605 family transposase | - |
| ST1539_RS24160 () | 2440..2790 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| ST1539_RS24165 () | 2857..3417 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| ST1539_RS24790 () | 3573..3860 | + | 288 | WP_071530243.1 | hypothetical protein | - |
| ST1539_RS24170 () | 4137..4622 | - | 486 | WP_000905606.1 | membrane protein | - |
| ST1539_RS24175 () | 4616..5125 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| ST1539_RS24185 () | 5129..5842 | - | 714 | Protein_8 | EAL domain-containing protein | - |
| ST1539_RS24190 () | 5851..6633 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| ST1539_RS24195 () | 6668..7189 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| ST1539_RS24200 () | 7186..7476 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| ST1539_RS24205 () | 7478..7783 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| ST1539_RS24210 () | 7785..8003 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| ST1539_RS24215 () | 8679..9200 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| ST1539_RS24225 () | 9684..9980 | + | 297 | WP_001687482.1 | hypothetical protein | - |
| ST1539_RS24230 () | 10474..11463 | + | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| ST1539_RS24235 () | 11722..12166 | - | 445 | Protein_17 | site-specific integrase | - |
| ST1539_RS24240 () | 12335..12716 | - | 382 | Protein_18 | YgiW/YdeI family stress tolerance OB fold protein | - |
| ST1539_RS24250 () | 13435..13737 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| ST1539_RS24255 () | 14012..14530 | + | 519 | WP_000748205.1 | major pilin PefA | - |
| ST1539_RS24260 () | 14758..17166 | + | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| ST1539_RS24265 () | 17159..17851 | + | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| ST1539_RS24270 () | 17866..18423 | + | 558 | WP_010999940.1 | membrane protein | - |
| ST1539_RS24275 () | 18676..19551 | + | 876 | WP_014343944.1 | hypothetical protein | - |
| ST1539_RS24280 () | 19983..20195 | + | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| ST1539_RS24285 () | 20180..20530 | + | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| ST1539_RS24290 () | 20775..21428 | + | 654 | WP_000178592.1 | DsbA family protein | - |
| ST1539_RS24890 () | 21418..21564 | + | 147 | WP_001192557.1 | hypothetical protein | - |
| ST1539_RS24295 () | 21561..22460 | + | 900 | WP_010999938.1 | YjiK family protein | - |
| ST1539_RS24300 () | 22550..23107 | + | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| ST1539_RS24305 () | 23374..24132 | + | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| ST1539_RS24310 () | 24229..24450 | - | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| ST1539_RS24320 () | 25310..26191 | - | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| ST1539_RS24325 () | 26172..26249 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| ST1539_RS24330 () | 26499..26765 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| ST1539_RS24335 () | 26929..27386 | - | 458 | Protein_36 | phospholipase | - |
| ST1539_RS24340 () | 27552..27707 | - | 156 | WP_000983042.1 | hypothetical protein | - |
| ST1539_RS24345 () | 27720..28004 | - | 285 | WP_000477658.1 | hypothetical protein | - |
| ST1539_RS24350 () | 28119..28682 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| ST1539_RS24355 () | 28737..29477 | - | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| ST1539_RS24360 () | 29497..34755 | - | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| ST1539_RS24365 () | 34837..35064 | + | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| ST1539_RS24370 () | 35064..35462 | + | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| ST1539_RS24375 () | 35471..37633 | - | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| ST1539_RS24380 () | 38010..38741 | - | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| ST1539_RS24385 () | 38777..39271 | - | 495 | WP_010999946.1 | entry exclusion protein | - |
| ST1539_RS24390 () | 39287..42109 | - | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| ST1539_RS24395 () | 42106..43488 | - | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| ST1539_RS24400 () | 43478..44026 | - | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| ST1539_RS24405 () | 44013..44306 | - | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| ST1539_RS24410 () | 44520..45269 | - | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| ST1539_RS24415 () | 45281..45496 | - | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| ST1539_RS24420 () | 45507..47333 | - | 1827 | WP_146471649.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| ST1539_RS24425 () | 47330..47749 | - | 420 | WP_001229397.1 | HNH endonuclease | - |
| ST1539_RS24430 () | 47786..48424 | - | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ST1539_RS24435 () | 48409..48717 | - | 309 | WP_010999945.1 | hypothetical protein | - |
| ST1539_RS24440 () | 48736..49728 | - | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| ST1539_RS24445 () | 49725..50357 | - | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| ST1539_RS24450 () | 50354..50740 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| ST1539_RS24455 () | 50715..53363 | - | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| ST1539_RS24460 () | 53379..53642 | - | 264 | WP_001239255.1 | hypothetical protein | - |
| ST1539_RS24465 () | 53759..54226 | - | 468 | WP_000549562.1 | hypothetical protein | - |
| ST1539_RS24470 () | 54219..54440 | - | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| ST1539_RS24475 () | 54575..55090 | - | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| ST1539_RS24480 () | 55087..55332 | - | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| ST1539_RS24485 () | 55310..55906 | - | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| ST1539_RS24490 () | 55896..57317 | - | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| ST1539_RS24495 () | 57317..58057 | - | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| ST1539_RS24500 () | 58044..58610 | - | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| ST1539_RS24505 () | 58632..58943 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| ST1539_RS24510 () | 58958..59320 | - | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| ST1539_RS24515 () | 59362..59589 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| ST1539_RS24520 () | 59683..60369 | - | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| ST1539_RS24525 () | 60562..60942 | - | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| ST1539_RS24535 () | 61357..61827 | + | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| ST1539_RS24895 () | 62138..62956 | - | 819 | Protein_76 | DUF945 domain-containing protein | - |
| ST1539_RS24815 () | 63059..63217 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| ST1539_RS24550 () | 63466..64203 | - | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| ST1539_RS24555 () | 64200..64634 | - | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| ST1539_RS24560 () | 64674..66671 | - | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| ST1539_RS24565 () | 66740..66982 | - | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| ST1539_RS24570 () | 67037..67555 | - | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| ST1539_RS24795 () | 68149..68340 | - | 192 | WP_159108360.1 | hypothetical protein | - |
| ST1539_RS24580 () | 68304..68627 | - | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| ST1539_RS24585 () | 68863..69297 | - | 435 | WP_000274533.1 | DUF1380 family protein | - |
| ST1539_RS24590 () | 69364..69798 | - | 435 | WP_001200150.1 | antirestriction protein | - |
| ST1539_RS24600 () | 70294..71058 | - | 765 | WP_001246548.1 | membrane protein | - |
| ST1539_RS24605 () | 71130..71543 | - | 414 | WP_000990114.1 | DUF1380 family protein | - |
| ST1539_RS24610 () | 71599..71820 | - | 222 | WP_001109588.1 | hypothetical protein | - |
| ST1539_RS24615 () | 71820..72500 | - | 681 | WP_000088645.1 | DNA methylase | - |
| ST1539_RS24625 () | 72882..73238 | - | 357 | WP_070130127.1 | hypothetical protein | - |
| ST1539_RS24630 () | 73231..73701 | - | 471 | WP_000490265.1 | hypothetical protein | - |
| ST1539_RS24635 () | 74212..74634 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ST1539_RS24640 () | 74634..75908 | + | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| ST1539_RS24645 () | 75990..76964 | - | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| ST1539_RS24650 () | 76964..78169 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| ST1539_RS24655 () | 78584..79525 | + | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ST1539_RS24660 () | 79557..80123 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| ST1539_RS24665 () | 80180..80515 | - | 336 | WP_001527010.1 | hypothetical protein | - |
| ST1539_RS24670 () | 80699..81115 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| ST1539_RS24675 () | 81201..82316 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| ST1539_RS24680 () | 82575..83063 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| ST1539_RS24690 () | 83718..84458 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| ST1539_RS24695 () | 84665..85225 | + | 561 | WP_001240331.1 | recombinase family protein | - |
| ST1539_RS24700 () | 85209..86873 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| ST1539_RS24705 () | 86806..87831 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| ST1539_RS24710 () | 88020..89057 | - | 1038 | WP_001121399.1 | IS630 family transposase | - |
| ST1539_RS24715 () | 89665..90558 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| ST1539_RS24720 () | 90732..90896 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| ST1539_RS24725 () | 91070..91837 | + | 768 | WP_001526990.1 | virulence protein SpvA | - |
| ST1539_RS24900 () | 91800..91967 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| ST1539_RS24730 () | 92019..93791 | + | 1773 | Protein_112 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|