MGE detailed information
MGE type: Prophage MGE length: 40490 bp
Accession: NZ_CP034935 Location: 4554958..4595447 Organism: Shigella dysenteriae strain 79-8006 Replicon: chromosome
Accession: NZ_CP034935 Location: 4554958..4595447 Organism: Shigella dysenteriae strain 79-8006 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPD85_RS23990 () | 4555407..4556204 | - | 798 | WP_001302302.1 | DgsA anti-repressor MtfA | - |
| EPD85_RS24000 () | 4556415..4557007 | - | 593 | Protein_4566 | hypothetical protein ; Integrase | Integrase |
| EPD85_RS24005 () | 4557048..4557976 | - | 929 | Protein_4567 | IS3 family transposase IS600 | Transposase |
| EPD85_RS24015 () | 4558745..4558981 | - | 237 | Protein_4569 | IS3 family transposase ISSd1 | Transposase |
| EPD85_RS24020 () | 4558997..4559266 | + | 270 | WP_001117462.1 | helix-turn-helix domain-containing protein | - |
| EPD85_RS24025 () | 4559263..4559688 | + | 426 | WP_000693856.1 | toxin YdaT family protein | - |
| EPD85_RS24030 () | 4559760..4560830 | + | 1071 | WP_024259707.1 | hypothetical protein | - |
| EPD85_RS24035 () | 4560871..4561293 | + | 423 | WP_001151146.1 | DUF977 family protein | - |
| EPD85_RS24040 () | 4561290..4561595 | + | 306 | WP_001266147.1 | DUF4406 domain-containing protein | - |
| EPD85_RS24045 () | 4561582..4562037 | + | 456 | WP_000335375.1 | ead/Ea22-like family protein | - |
| EPD85_RS24050 () | 4562087..4563625 | - | 1539 | WP_000099181.1 | IS66 family transposase ISEc22 | Transposase |
| EPD85_RS24055 () | 4563674..4564021 | - | 348 | WP_000612610.1 | IS66 family transposase ISKpn24 | Transposase |
| EPD85_RS24060 () | 4564018..4564398 | - | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| EPD85_RS24065 () | 4564510..4564926 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 4565508..4565566 | - | 59 | - | - | Antitoxin Detail |
| EPD85_RS24075 () | 4565578..4565733 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| EPD85_RS24080 () | 4565901..4566179 | + | 279 | WP_000929754.1 | hypothetical protein | - |
| EPD85_RS24085 () | 4566181..4566930 | + | 750 | Protein_4582 | hypothetical protein | - |
| EPD85_RS24090 () | 4566980..4567908 | - | 929 | Protein_4583 | IS3 family transposase IS600 | Transposase |
| EPD85_RS25450 () | 4568677..4568745 | + | 69 | Protein_4585 | phage tail protein | - |
| EPD85_RS24100 () | 4568748..4569293 | + | 546 | WP_000902849.1 | tail fiber assembly protein | - |
| EPD85_RS24105 () | 4569317..4570585 | + | 1269 | Protein_4587 | prophage tail fiber N-terminal domain-containing protein | - |
| EPD85_RS24110 () | 4570536..4571159 | + | 624 | WP_000551126.1 | DUF4376 domain-containing protein | - |
| EPD85_RS24115 () | 4571339..4572982 | - | 1644 | WP_046891740.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| EPD85_RS24120 () | 4573251..4573948 | + | 698 | WP_094106546.1 | IS1 family transposase IS1X2 | Transposase |
| EPD85_RS24125 () | 4574074..4574205 | - | 132 | Protein_4591 | methyltransferase | - |
| EPD85_RS24130 () | 4574261..4574958 | + | 698 | WP_134795416.1 | IS1 family transposase IS1R | Transposase |
| EPD85_RS24135 () | 4574970..4575518 | - | 549 | Protein_4593 | class I SAM-dependent methyltransferase | - |
| EPD85_RS24140 () | 4575575..4575844 | + | 270 | Protein_4594 | tail fiber assembly protein | - |
| EPD85_RS24150 () | 4578074..4578481 | - | 408 | Protein_4596 | cytochrome b | - |
| EPD85_RS24155 () | 4578608..4579836 | + | 1229 | WP_171764165.1 | IS3 family transposase IS2 | Transposase |
| EPD85_RS24160 () | 4579845..4579940 | - | 96 | Protein_4598 | cytochrome B | - |
| EPD85_RS24175 () | 4581550..4582200 | - | 651 | WP_162281804.1 | metal-binding protein ZinT | - |
| EPD85_RS24180 () | 4582457..4583092 | - | 636 | WP_001241113.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| EPD85_RS24185 () | 4583093..4584097 | - | 1005 | WP_000740102.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| EPD85_RS24190 () | 4584206..4584619 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| EPD85_RS24195 () | 4584752..4585423 | + | 672 | WP_001339045.1 | putative transcriptional regulatory protein YedW | VF |
| EPD85_RS24200 () | 4585423..4586781 | + | 1359 | WP_000826750.1 | two-component system sensor histidine kinase HprS | - |
| EPD85_RS24205 () | 4586889..4587629 | - | 741 | Protein_4606 | protein deglycase HchA | - |
| EPD85_RS24210 () | 4587685..4588382 | + | 698 | WP_134795416.1 | IS1 family transposase IS1R | Transposase |
| EPD85_RS24845 () | 4588398..4588517 | - | 120 | Protein_4608 | protein deglycase HchA | - |
| EPD85_RS24220 () | 4589886..4590383 | - | 498 | Protein_4610 | porin | - |
| EPD85_RS24225 () | 4590477..4591705 | + | 1229 | WP_134805288.1 | IS3 family transposase IS2 | Transposase |
| EPD85_RS24230 () | 4591717..4592295 | - | 579 | Protein_4612 | porin | - |
| EPD85_RS24235 () | 4592946..4593227 | + | 282 | WP_001297704.1 | cell division protein DrpB | - |
| EPD85_RS24240 () | 4593267..4593962 | + | 696 | WP_000365569.1 | phosphohydrolase | - |
| EPD85_RS24245 () | 4594029..4595447 | + | 1419 | WP_001157235.1 | DNA-cytosine methyltransferase | - |
| EPD85_RS24250 () | 4595428..4595898 | + | 471 | WP_000786008.1 | VSPR family DNA mismatch endonuclease | - |
| EPD85_RS24255 () | 4595887..4596807 | - | 921 | WP_001212273.1 | drug/metabolite exporter YedA | - |
| EPD85_RS24260 () | 4596980..4597897 | + | 918 | WP_129592878.1 | DUF808 domain-containing protein | - |
| EPD85_RS24265 () | 4597976..4598158 | + | 183 | WP_000009307.1 | DUF2158 domain-containing protein | - |
| EPD85_RS24270 () | 4598329..4600023 | + | 1695 | WP_077897541.1 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|