MGE detailed information
MGE type: IScluster/Tn MGE length: 23306 bp
Accession: NZ_CP034934 Location: 5..23310 Organism: Shigella dysenteriae strain 79-8006 Replicon: plasmid p79-8006
Accession: NZ_CP034934 Location: 5..23310 Organism: Shigella dysenteriae strain 79-8006 Replicon: plasmid p79-8006
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPD85_RS00005 | 5..1132 | + | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| EPD85_RS00015 | 1425..3017 | - | 1593 | WP_001072392.1 | IS66 family transposase ISEc43 | Transposase |
| EPD85_RS00020 | 3048..3398 | - | 351 | WP_129593018.1 | IS66 family transposase IS682 | Transposase |
| EPD85_RS00025 | 3395..3751 | - | 357 | WP_000239757.1 | IS66 family transposase IS682 | Transposase |
| EPD85_RS24850 | 3903..4004 | + | 102 | Protein_4 | ATP-binding protein | - |
| EPD85_RS00030 | 4086..4295 | - | 210 | Protein_5 | peptidoglycan-binding protein | - |
| EPD85_RS00035 | 4345..4596 | - | 252 | WP_000433928.1 | transporter | - |
| EPD85_RS00040 | 5048..5332 | + | 285 | WP_001178088.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| EPD85_RS00045 | 5332..5607 | + | 276 | WP_000421262.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EPD85_RS24615 | 5739..5876 | - | 138 | WP_000766699.1 | hypothetical protein | - |
| EPD85_RS24855 | 6152..6334 | - | 183 | WP_241547534.1 | plasmid partitioning/stability family protein | - |
| EPD85_RS00060 | 6337..6904 | - | 568 | Protein_11 | plasmid segregation protein ParM | - |
| EPD85_RS00065 | 6912..8003 | + | 1092 | Protein_12 | IS66 family transposase ISEc49 | Transposase |
| EPD85_RS00070 | 8198..9328 | - | 1131 | WP_050546159.1 | IS91 family transposase | - |
| EPD85_RS00085 | 10700..10972 | - | 273 | WP_000019158.1 | hypothetical protein | - |
| EPD85_RS00090 | 11429..12657 | - | 1229 | Protein_16 | IS3-like element IS2 family transposase | - |
| EPD85_RS00095 | 12901..13119 | + | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| EPD85_RS00100 | 13121..13426 | + | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| EPD85_RS00105 | 13450..13557 | + | 108 | WP_023592908.1 | IS66 family transposase IS679 | Transposase |
| EPD85_RS00110 | 13819..15456 | + | 1638 | WP_129593020.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| EPD85_RS00115 | 15664..15933 | + | 270 | WP_000079956.1 | type II toxin-antitoxin system antitoxin YacA | - |
| EPD85_RS24860 | 15933..16102 | + | 170 | Protein_22 | type II toxin-antitoxin system toxin YacB | - |
| EPD85_RS00120 | 16185..16667 | + | 483 | Protein_23 | Protein kinase OspG | VF |
| EPD85_RS24865 | 17434..17586 | - | 153 | Protein_25 | hypothetical protein | - |
| EPD85_RS00135 | 18069..18911 | + | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| EPD85_RS00140 | 18914..20002 | + | 1089 | WP_005027207.1 | putative hexosyltransferase CapU | - |
| EPD85_RS00145 | 20007..20957 | + | 951 | WP_005045525.1 | virulence factor VirK | - |
| EPD85_RS00150 | 21022..21966 | + | 945 | WP_005027201.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| EPD85_RS00155 | 22120..22791 | - | 672 | Protein_30 | IS630 family transposase IS630 | Transposase |
| EPD85_RS00165 | 23752..25932 | + | 2181 | WP_069661558.1 | type IV conjugative transfer system coupling protein TraD | - |
| EPD85_RS00170 | 25941..26339 | - | 399 | WP_000911318.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| EPD85_RS00175 | 26339..26566 | - | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|