MGE detailed information
MGE type: Prophage MGE length: 42237 bp
Accession: NZ_CP034931 Location: 1364144..1406380 Organism: Shigella flexneri strain 2013C-3749 Replicon: chromosome
Accession: NZ_CP034931 Location: 1364144..1406380 Organism: Shigella flexneri strain 2013C-3749 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPD86_RS06770 () | 1359270..1360897 | + | 1628 | Protein_1314 | toxic metabolite efflux MATE transporter YeeO | - |
| EPD86_RS06780 () | 1361529..1362245 | - | 717 | WP_000532920.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| EPD86_RS06785 () | 1362588..1364042 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| EPD86_RS06790 () | 1364144..1364350 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| EPD86_RS06795 () | 1364351..1365550 | - | 1200 | Protein_1318 | IS3 family transposase IS600 | Transposase |
| EPD86_RS06805 () | 1365636..1366804 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| EPD86_RS06810 () | 1366868..1367374 | - | 507 | Protein_1320 | MFS transporter | - |
| EPD86_RS06815 () | 1367430..1368598 | + | 1169 | WP_094081534.1 | IS3 family transposase ISLad1 | Transposase |
| EPD86_RS06820 () | 1368705..1369967 | - | 1263 | Protein_1322 | hypothetical protein ; Integrase | Integrase |
| EPD86_RS06830 () | 1370305..1371102 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| EPD86_RS06840 () | 1371313..1372363 | - | 1051 | Protein_1324 | Tyrosine recombinase XerC ; Integrase | Integrase |
| EPD86_RS06845 () | 1372363..1372503 | - | 141 | Protein_1325 | DUF4224 domain-containing protein | - |
| EPD86_RS06850 () | 1372530..1372946 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 1373528..1373586 | - | 59 | - | - | Antitoxin Detail |
| EPD86_RS06860 () | 1373598..1373753 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| EPD86_RS06865 () | 1373921..1374199 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| EPD86_RS06870 () | 1374201..1375259 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| EPD86_RS06875 () | 1375260..1375625 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EPD86_RS06880 () | 1375622..1376310 | + | 689 | Protein_1331 | bacteriophage antitermination protein Q | - |
| EPD86_RS06905 () | 1377106..1377321 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| EPD86_RS06910 () | 1377420..1378094 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| EPD86_RS06915 () | 1378091..1378441 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| EPD86_RS06920 () | 1378438..1378935 | + | 498 | Protein_1335 | IS66 family transposase ISSfl3 | Transposase |
| EPD86_RS06925 () | 1378991..1379688 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| EPD86_RS06930 () | 1379704..1380027 | + | 324 | Protein_1337 | IS66 family transposase ISSfl3 | Transposase |
| EPD86_RS06940 () | 1380093..1381249 | + | 1157 | WP_094081529.1 | IS3 family transposase IS600 | Transposase |
| EPD86_RS06945 () | 1381274..1381633 | + | 360 | Protein_1339 | hypothetical protein | - |
| EPD86_RS06950 () | 1381643..1381804 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| EPD86_RS06955 () | 1381801..1383297 | + | 1497 | WP_000155743.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| EPD86_RS06960 () | 1383297..1383653 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| EPD86_RS06965 () | 1383653..1383988 | + | 336 | WP_001251340.1 | phage tail assembly protein | - |
| EPD86_RS06970 () | 1384073..1386022 | + | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| EPD86_RS06975 () | 1386090..1386572 | + | 483 | WP_032322769.1 | hypothetical protein | - |
| EPD86_RS06985 () | 1387420..1388277 | + | 858 | Protein_1347 | IS3 family transposase IS600 | Transposase |
| EPD86_RS06990 () | 1388318..1388797 | + | 480 | Protein_1348 | DUF4376 domain-containing protein | - |
| EPD86_RS06995 () | 1388977..1390620 | - | 1644 | WP_014532281.1 | Putative transposon Tn552 DNA-invertase bin3 | VF |
| EPD86_RS07000 () | 1390936..1391604 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| EPD86_RS07005 () | 1391661..1391930 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| EPD86_RS07010 () | 1393008..1393658 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| EPD86_RS07015 () | 1393916..1394551 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| EPD86_RS07020 () | 1394552..1395556 | - | 1005 | Protein_1354 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| EPD86_RS07025 () | 1395665..1396078 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| EPD86_RS07030 () | 1396211..1396882 | + | 672 | WP_001347103.1 | Sensor histidine kinase RcsC | VF |
| EPD86_RS07035 () | 1396882..1398240 | + | 1359 | WP_000826714.1 | two-component system sensor histidine kinase HprS | - |
| EPD86_RS07040 () | 1398348..1399199 | - | 852 | WP_000218218.1 | protein deglycase HchA | - |
| EPD86_RS07050 () | 1400570..1400740 | - | 171 | Protein_1360 | porin | - |
| EPD86_RS07055 () | 1400843..1402071 | + | 1229 | WP_111778310.1 | IS3 family transposase IS2 | Transposase |
| EPD86_RS07060 () | 1402083..1402793 | - | 711 | Protein_1362 | porin | - |
| EPD86_RS07065 () | 1402910..1404057 | + | 1148 | WP_094081536.1 | IS3 family transposase ISEhe3 | Transposase |
| EPD86_RS07070 () | 1404058..1404315 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| EPD86_RS07075 () | 1404394..1404895 | + | 502 | Protein_1365 | HD domain-containing protein | - |
| EPD86_RS07080 () | 1404962..1406380 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| EPD86_RS07085 () | 1406361..1406831 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| EPD86_RS07090 () | 1406820..1407740 | - | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| EPD86_RS07095 () | 1407913..1408830 | + | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| EPD86_RS07100 () | 1408909..1409091 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| EPD86_RS07105 () | 1409262..1410956 | + | 1695 | Protein_1371 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|