MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 110569 bp
Accession: NZ_CP034653 Location: 2630254..2740822 Organism: Xanthomonas vasicola pv. arecae strain NCPPB 2649 Replicon: chromosome
Accession: NZ_CP034653 Location: 2630254..2740822 Organism: Xanthomonas vasicola pv. arecae strain NCPPB 2649 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NX80_RS12055 () | 2626726..2627952 | - | 1227 | WP_047700098.1 | MFS transporter | - |
| NX80_RS12065 () | 2628212..2628322 | - | 111 | WP_010372880.1 | cytochrome bd-I oxidase subunit CydX | - |
| NX80_RS12070 () | 2628407..2629557 | - | 1151 | Protein_2229 | cytochrome d ubiquinol oxidase subunit II | - |
| NX80_RS12075 () | 2629574..2631203 | - | 1630 | Protein_2230 | cytochrome ubiquinol oxidase subunit I | - |
| NX80_RS12080 () | 2631379..2633091 | + | 1713 | WP_010372882.1 | thiol reductant ABC exporter subunit CydD | - |
| NX80_RS12085 () | 2633088..2634773 | + | 1686 | WP_047698054.1 | thiol reductant ABC exporter subunit CydC | - |
| NX80_RS12095 () | 2634981..2635583 | - | 603 | WP_047698053.1 | cold shock and DUF1294 domain-containing protein | - |
| NX80_RS12100 () | 2635733..2636935 | - | 1203 | WP_047698052.1 | homoserine O-acetyltransferase | - |
| NX80_RS12105 () | 2637322..2638335 | - | 1014 | WP_039434729.1 | tetratricopeptide repeat protein | - |
| NX80_RS12110 () | 2638335..2638769 | - | 435 | WP_010372894.1 | cytochrome c-type biogenesis protein CcmH | - |
| NX80_RS12115 () | 2638766..2639368 | - | 603 | WP_010372897.1 | DsbE family thiol:disulfide interchange protein | - |
| NX80_RS12120 () | 2639361..2641298 | - | 1938 | WP_047698051.1 | Cytochrome c-type biogenesis protein CcmF | VF |
| NX80_RS12125 () | 2641470..2641940 | - | 471 | WP_010372901.1 | Cytochrome c-type biogenesis protein CcmE | VF |
| NX80_RS12130 () | 2641937..2642107 | - | 171 | WP_010372903.1 | heme exporter protein CcmD | - |
| NX80_RS12135 () | 2642104..2642856 | - | 753 | WP_010382232.1 | Heme exporter protein C | VF |
| NX80_RS12140 () | 2642951..2643646 | - | 696 | WP_047698050.1 | Heme exporter protein B | VF |
| NX80_RS12145 () | 2643643..2644287 | - | 645 | WP_008573812.1 | Cytochrome c biogenesis ATP-binding export protein CcmA | VF |
| NX80_RS12150 () | 2644515..2645663 | + | 1149 | WP_047698049.1 | pyridoxal phosphate-dependent aminotransferase | - |
| NX80_RS12160 () | 2646037..2646849 | + | 813 | WP_010372920.1 | amidohydrolase | - |
| NX80_RS12165 () | 2646929..2647777 | - | 849 | WP_193588634.1 | glutaminyl-peptide cyclotransferase | - |
| NX80_RS12170 () | 2647863..2648300 | + | 438 | WP_010372925.1 | hypothetical protein | - |
| NX80_RS12175 () | 2648508..2650163 | - | 1656 | WP_047698047.1 | pseudouridine synthase | - |
| NX80_RS12180 () | 2650156..2651358 | - | 1203 | WP_047698046.1 | SMC-Scp complex subunit ScpB | - |
| NX80_RS12185 () | 2651372..2652277 | - | 906 | WP_010372932.1 | segregation/condensation protein A | - |
| NX80_RS12190 () | 2652645..2652944 | + | 300 | WP_017117437.1 | YciI family protein | - |
| NX80_RS12195 () | 2652941..2653210 | + | 270 | WP_010382200.1 | BolA family transcriptional regulator | - |
| NX80_RS12200 () | 2653831..2654853 | + | 1023 | WP_017115157.1 | LacI family transcriptional regulator | - |
| NX80_RS12205 () | 2655138..2657159 | + | 2022 | Protein_2254 | TonB-dependent receptor | - |
| NX80_RS12210 () | 2657206..2657904 | - | 699 | WP_015462628.1 | UPF0149 family protein | - |
| NX80_RS12215 () | 2657923..2660898 | - | 2976 | WP_011345576.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| NX80_RS12220 () | 2660903..2661322 | - | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| NX80_RS12225 () | 2661322..2661561 | - | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| NX80_RS12230 () | 2661775..2662698 | + | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| NX80_RS12235 () | 2662740..2664506 | + | 1767 | Protein_2260 | Type IV secretion system protein virB4 | VF |
| NX80_RS12240 () | 2664503..2665171 | + | 669 | WP_047698035.1 | hypothetical protein | - |
| NX80_RS12245 () | 2665219..2665431 | + | 213 | WP_005931790.1 | hypothetical protein | - |
| NX80_RS12250 () | 2665424..2665804 | + | 381 | WP_039447706.1 | hypothetical protein | - |
| NX80_RS12255 () | 2665806..2666672 | + | 867 | WP_047698036.1 | type IV secretion system protein | - |
| NX80_RS12260 () | 2666669..2667343 | + | 675 | WP_011052986.1 | type IV secretion system protein | - |
| NX80_RS12265 () | 2667368..2668150 | + | 783 | WP_029820916.1 | Type IV secretion system protein virB9 | VF |
| NX80_RS12270 () | 2668152..2669372 | + | 1221 | WP_047698037.1 | Type IV secretion system protein virB10 | VF |
| NX80_RS12275 () | 2669383..2670405 | + | 1023 | WP_011052983.1 | Type IV secretion system protein VirB11 | VF |
| NX80_RS12280 () | 2670416..2671303 | + | 888 | WP_033483242.1 | Type IV secretion system protein virB1 | VF |
| NX80_RS12285 () | 2671482..2671841 | + | 360 | WP_175021602.1 | hypothetical protein | - |
| NX80_RS12290 () | 2671945..2672304 | + | 360 | WP_033483239.1 | hypothetical protein | - |
| NX80_RS12300 () | 2672564..2673364 | - | 801 | WP_126925216.1 | IS21 family transposase ISRme20 | Transposase |
| NX80_RS12305 () | 2673364..2674404 | - | 1041 | WP_033011908.1 | IS21 family transposase ISRme20 | Transposase |
| NX80_RS12310 () | 2674484..2675371 | - | 888 | Protein_2274 | ParA family protein | - |
| NX80_RS12315 () | 2675526..2676098 | - | 573 | WP_003490825.1 | Tn3 family transposase ISPsy42 | Transposase |
| NX80_RS12325 () | 2676297..2676518 | + | 222 | WP_005917854.1 | antitoxin MazE family protein | Antitoxin Detail |
| NX80_RS12330 () | 2676515..2676838 | + | 324 | WP_005917856.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| NX80_RS12335 () | 2676864..2677151 | + | 288 | WP_029220894.1 | hypothetical protein | - |
| NX80_RS12340 () | 2677158..2678345 | + | 1188 | WP_003490828.1 | zeta toxin family protein | - |
| NX80_RS12345 () | 2678531..2678815 | - | 285 | WP_003490829.1 | hypothetical protein | - |
| NX80_RS12350 () | 2679104..2682082 | - | 2979 | WP_126925285.1 | conjugative relaxase | - |
| NX80_RS12355 () | 2682096..2683670 | - | 1575 | WP_029221893.1 | type IV secretion system DNA-binding domain-containing protein | - |
| NX80_RS23245 () | 2683674..2683847 | - | 174 | WP_173426872.1 | hypothetical protein | - |
| NX80_RS12360 () | 2683847..2684245 | - | 399 | WP_047698887.1 | hypothetical protein | - |
| NX80_RS12365 () | 2684625..2685665 | + | 1041 | WP_033011908.1 | IS21 family transposase ISRme20 | Transposase |
| NX80_RS12370 () | 2685665..2686465 | + | 801 | WP_126925216.1 | IS21 family transposase ISRme20 | Transposase |
| NX80_RS12375 () | 2686518..2686718 | - | 201 | Protein_2287 | DNA-binding protein | - |
| NX80_RS12385 () | 2686925..2689888 | - | 2964 | WP_126925268.1 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| NX80_RS12390 () | 2689933..2690865 | - | 933 | Protein_2289 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| NX80_RS12395 () | 2691049..2692104 | + | 1056 | WP_126925287.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| NX80_RS12400 () | 2692280..2693242 | - | 963 | WP_126925289.1 | IS1595 family transposase IS1595 | Transposase |
| NX80_RS23250 () | 2693632..2696136 | + | 2505 | WP_193588635.1 | HAD hydrolase-like protein | - |
| NX80_RS12415 () | 2696261..2696695 | - | 435 | Protein_2293 | IS5 family transposase ISXca5 | Transposase |
| NX80_RS12420 () | 2697051..2697851 | - | 801 | WP_126925216.1 | IS21 family transposase ISRme20 | Transposase |
| NX80_RS12425 () | 2697851..2698483 | - | 633 | WP_193588586.1 | IS21 family transposase ISRme20 | Transposase |
| NX80_RS12430 () | 2698564..2699487 | - | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| NX80_RS12435 () | 2699702..2699941 | + | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| NX80_RS12440 () | 2699941..2700360 | + | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| NX80_RS12445 () | 2700365..2703340 | + | 2976 | WP_011345576.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| NX80_RS12450 () | 2703359..2704057 | + | 699 | WP_015462628.1 | UPF0149 family protein | - |
| NX80_RS12455 () | 2704102..2705064 | + | 963 | Protein_2301 | hypothetical protein | - |
| NX80_RS12460 () | 2705168..2706787 | + | 1620 | WP_017112705.1 | hypothetical protein | - |
| NX80_RS12465 () | 2706791..2708161 | + | 1371 | WP_026112471.1 | sugar ABC transporter substrate-binding protein | - |
| NX80_RS12470 () | 2708158..2709042 | + | 885 | WP_011347672.1 | sugar ABC transporter permease | - |
| NX80_RS12475 () | 2709039..2709875 | + | 837 | WP_010372959.1 | carbohydrate ABC transporter permease | - |
| NX80_RS12480 () | 2709902..2713036 | + | 3135 | WP_047699818.1 | discoidin domain-containing protein | - |
| NX80_RS12485 () | 2713099..2714010 | + | 912 | WP_126925295.1 | endonuclease/exonuclease/phosphatase family protein | - |
| NX80_RS12490 () | 2714110..2715330 | - | 1221 | WP_047699875.1 | TraB/GumN family protein | - |
| NX80_RS12495 () | 2715342..2715863 | - | 522 | WP_047699820.1 | GNAT family N-acetyltransferase | - |
| NX80_RS12500 () | 2715868..2716752 | - | 885 | WP_010372975.1 | carbon-nitrogen hydrolase | - |
| NX80_RS12510 () | 2717037..2718071 | - | 1035 | WP_010372979.1 | agmatine deiminase family protein | - |
| NX80_RS12520 () | 2718307..2718648 | - | 342 | WP_010372985.1 | hypothetical protein | - |
| NX80_RS12525 () | 2718890..2719015 | - | 126 | WP_005913193.1 | type B 50S ribosomal protein L36 | - |
| NX80_RS12530 () | 2719188..2719871 | + | 684 | WP_010373008.1 | (d)CMP kinase | - |
| NX80_RS12535 () | 2720055..2721740 | + | 1686 | WP_003489652.1 | 30S ribosomal protein S1 | - |
| NX80_RS12540 () | 2721829..2722140 | + | 312 | WP_010373014.1 | integration host factor subunit beta | - |
| NX80_RS12545 () | 2722208..2722513 | + | 306 | WP_010382169.1 | LapA family protein | - |
| NX80_RS12550 () | 2722520..2723698 | + | 1179 | WP_010373020.1 | lipopolysaccharide assembly protein LapB | - |
| NX80_RS12555 () | 2723698..2724666 | + | 969 | WP_010373023.1 | glycosyltransferase family 4 protein | - |
| NX80_RS12560 () | 2724680..2726587 | + | 1908 | WP_010373025.1 | UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase | VF |
| NX80_RS12565 () | 2726587..2727480 | + | 894 | WP_010373029.1 | UTP--glucose-1-phosphate uridylyltransferase | VF |
| NX80_RS12575 () | 2728232..2728552 | - | 321 | WP_010382162.1 | DUF1244 domain-containing protein | - |
| NX80_RS12580 () | 2728602..2729495 | + | 894 | WP_010373037.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| NX80_RS12585 () | 2729702..2731159 | + | 1458 | WP_010373039.1 | IMP dehydrogenase | - |
| NX80_RS12590 () | 2731281..2732846 | + | 1566 | WP_047699825.1 | glutamine-hydrolyzing GMP synthase | - |
| NX80_RS12595 () | 2732995..2735433 | - | 2439 | WP_026112473.1 | DUF2309 domain-containing protein | - |
| NX80_RS12600 () | 2735457..2737025 | - | 1569 | WP_047699827.1 | oxidoreductase | - |
| NX80_RS12605 () | 2737135..2738025 | + | 891 | WP_017121893.1 | Transcriptional activator protein NhaR | VF |
| NX80_RS12610 () | 2738063..2738974 | - | 912 | WP_010373165.1 | HTH-type transcriptional regulator PgrR | VF |
| NX80_RS12615 () | 2739076..2739402 | + | 327 | WP_017118678.1 | nuclear transport factor 2 family protein | - |
| NX80_RS12620 () | 2739399..2740181 | + | 783 | WP_047699829.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| NX80_RS12625 () | 2740201..2741319 | - | 1119 | WP_010373173.1 | YeiH family protein | - |
| NX80_RS12630 () | 2741434..2742357 | + | 924 | WP_010378912.1 | LysR family transcriptional regulator | - |
| NX80_RS12635 () | 2742565..2743179 | - | 615 | WP_010373184.1 | hypothetical protein | - |
| NX80_RS12640 () | 2743222..2744376 | - | 1155 | WP_047699831.1 | Cache 3/Cache 2 fusion domain-containing protein | - |
| NX80_RS12645 () | 2744735..2745376 | - | 642 | WP_010378904.1 | response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|