MGE detailed information
MGE type: Conjugative plasmid MGE length: 76559 bp
Accession: NZ_CP034592 Location: 1..76559 Organism: Escherichia coli strain L37 Replicon: plasmid pL37-4
Accession: NZ_CP034592 Location: 1..76559 Organism: Escherichia coli strain L37 Replicon: plasmid pL37-4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKM58_RS23235 () | 1705..6975 | + | 5271 | WP_053320757.1 | Multifunctional conjugation protein TraI | Relaxase |
| EKM58_RS23240 () | 6995..7738 | + | 744 | WP_000205704.1 | conjugal transfer pilus acetylase TraX | - |
| EKM58_RS23245 () | 7793..8353 | + | 561 | WP_024184455.1 | fertility inhibition protein FinO | - |
| EKM58_RS23250 () | 8489..8701 | + | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| EKM58_RS23260 () | 8987..11536 | + | 2550 | WP_053320758.1 | DEAD/DEAH box helicase family protein | - |
| EKM58_RS23265 () | 11582..13615 | + | 2034 | WP_000887497.1 | N-6 DNA methylase | - |
| EKM58_RS23270 () | 13680..16535 | + | 2856 | WP_053320759.1 | chromosome segregation protein SMC | - |
| EKM58_RS23275 () | 17477..17737 | + | 261 | WP_000078108.1 | replication regulatory protein RepA | - |
| EKM58_RS23280 () | 17972..18046 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| EKM58_RS23285 () | 18039..18896 | + | 858 | WP_065800511.1 | incFII family plasmid replication initiator RepA | - |
| EKM58_RS23295 () | 19835..20488 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| EKM58_RS23300 () | 20581..20838 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| EKM58_RS23305 () | 20771..21172 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| EKM58_RS23310 () | 21421..21836 | + | 416 | Protein_14 | IS1 family transposase IS1R | Transposase |
| EKM58_RS23315 () | 21872..22417 | - | 546 | Protein_15 | Tn3 family transposase TnpA_Tn3 | Transposase |
| EKM58_RS23320 () | 22483..23186 | - | 704 | Protein_16 | IS6 family transposase IS15DII | Transposase |
| EKM58_RS23325 () | 23251..23932 | - | 682 | Protein_17 | IS91 family transposase ISCARN110 | Transposase |
| EKM58_RS23330 () | 24204..24910 | + | 707 | Protein_18 | IS6 family transposase | - |
| EKM58_RS23340 () | 24920..25390 | + | 471 | WP_049824851.1 | TetR family transcriptional regulator | - |
| EKM58_RS23345 () | 25410..26198 | + | 789 | WP_014839978.1 | winged helix-turn-helix domain-containing protein | - |
| EKM58_RS23350 () | 26198..26716 | + | 519 | WP_014839979.1 | hypothetical protein | - |
| EKM58_RS23355 () | 26721..27137 | - | 417 | WP_014839980.1 | Glutathione transferase FosA | ARG |
| EKM58_RS23360 () | 27523..28227 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| EKM58_RS23365 () | 28277..29020 | + | 744 | Protein_24 | Beta-lactamase TEM | ARG |
| EKM58_RS23370 () | 29279..29755 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| EKM58_RS23375 () | 29802..30677 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| EKM58_RS23380 () | 31099..31803 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| EKM58_RS24015 () | 31869..31934 | + | 66 | Protein_28 | IS1 family transposase | - |
| EKM58_RS23400 () | 33383..33617 | + | 235 | Protein_29 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EKM58_RS23405 () | 33745..34026 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| EKM58_RS23410 () | 34149..34499 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| EKM58_RS23415 () | 34502..35464 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| EKM58_RS23420 () | 35611..35904 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| EKM58_RS23430 () | 35981..36664 | + | 684 | WP_000085883.1 | DNA methylase | - |
| EKM58_RS23435 () | 36665..36886 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| EKM58_RS23440 () | 36900..37334 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| EKM58_RS24020 () | 37385..38161 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| EKM58_RS23455 () | 38702..39004 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| EKM58_RS23460 () | 39051..39473 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| EKM58_RS23465 () | 39470..39661 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| EKM58_RS23475 () | 40699..40929 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| EKM58_RS23480 () | 40981..42342 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| EKM58_RS23485 () | 42389..42952 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| EKM58_RS23510 () | 43802..44329 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| EKM58_RS23515 () | 44387..44620 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| EKM58_RS23520 () | 44681..46704 | + | 2024 | Protein_46 | ParB/RepB/Spo0J family partition protein | - |
| EKM58_RS23525 () | 46773..47207 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| EKM58_RS23530 () | 47204..47923 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 47935..48159 | + | 225 | NuclAT_0 | - | - |
| - () | 47935..48159 | + | 225 | NuclAT_0 | - | - |
| - () | 47935..48159 | + | 225 | NuclAT_0 | - | - |
| - () | 47935..48159 | + | 225 | NuclAT_0 | - | - |
| EKM58_RS23920 () | 47944..48123 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - () | 48092..48157 | + | 66 | - | - | Antitoxin Detail |
| EKM58_RS23535 () | 48203..48361 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| EKM58_RS24025 () | 48599..48976 | - | 378 | Protein_51 | hypothetical protein | - |
| EKM58_RS23555 () | 49276..49572 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| EKM58_RS23560 () | 49683..50504 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| EKM58_RS23565 () | 50801..51448 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| EKM58_RS23570 () | 51725..52108 | + | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| EKM58_RS23575 () | 52299..52985 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| EKM58_RS23580 () | 53079..53306 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| EKM58_RS23585 () | 53340..53705 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| EKM58_RS23590 () | 53720..54031 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| EKM58_RS23595 () | 54053..54619 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| EKM58_RS23600 () | 54630..55334 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| EKM58_RS23605 () | 55334..56761 | + | 1428 | WP_032297072.1 | conjugal transfer protein TraB | - |
| EKM58_RS23610 () | 56751..57341 | + | 591 | WP_000002778.1 | conjugal transfer protein TraP | - |
| EKM58_RS23615 () | 57295..57525 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| EKM58_RS23620 () | 57537..57788 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| EKM58_RS23625 () | 57785..58300 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EKM58_RS23630 () | 58435..58656 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| EKM58_RS23635 () | 58816..61443 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| EKM58_RS23640 () | 61440..61826 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| EKM58_RS23645 () | 61823..62455 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| EKM58_RS23650 () | 62452..63444 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| EKM58_RS23655 () | 63471..63779 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| EKM58_RS23660 () | 63842..64363 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| EKM58_RS23665 () | 64390..65028 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EKM58_RS23670 () | 65025..65396 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| EKM58_RS23675 () | 65422..65844 | + | 423 | WP_001229309.1 | HNH endonuclease | - |
| EKM58_RS23680 () | 65841..67691 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EKM58_RS23685 () | 67718..67975 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| EKM58_RS23690 () | 67968..68711 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EKM58_RS23695 () | 68827..69108 | + | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| EKM58_RS23700 () | 69095..69640 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EKM58_RS23705 () | 69570..69944 | + | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| EKM58_RS23710 () | 69898..70290 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| EKM58_RS23715 () | 70277..71650 | + | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| EKM58_RS23720 () | 71647..74469 | + | 2823 | WP_053320755.1 | conjugal transfer mating pair stabilization protein TraG | - |
| EKM58_RS23725 () | 74484..74987 | + | 504 | WP_053320762.1 | surface exclusion protein | - |
| EKM58_RS23730 () | 75019..75750 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|