MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94438 bp
Accession: NZ_CP034568 Location: 1..94438 Organism: Vibrio parahaemolyticus strain D3112 Replicon: plasmid p2
Accession: NZ_CP034568 Location: 1..94438 Organism: Vibrio parahaemolyticus strain D3112 Replicon: plasmid p2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKH72_RS25855 () | 182..520 | + | 339 | WP_129831085.1 | hypothetical protein | - |
| EKH72_RS25860 () | 714..1619 | + | 906 | WP_071653124.1 | endonuclease/exonuclease/phosphatase family protein | - |
| EKH72_RS25865 () | 1920..4895 | + | 2976 | WP_129831086.1 | hypothetical protein | - |
| EKH72_RS25870 () | 5165..5677 | + | 513 | WP_029865899.1 | hypothetical protein | - |
| EKH72_RS25875 () | 6330..11414 | - | 5085 | WP_129831087.1 | hypothetical protein | - |
| EKH72_RS25880 () | 12314..12613 | - | 300 | WP_029865329.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EKH72_RS25885 () | 12610..12852 | - | 243 | WP_029865327.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| EKH72_RS25890 () | 13128..14564 | + | 1437 | WP_129831088.1 | hypothetical protein | - |
| EKH72_RS25895 () | 15194..15442 | + | 249 | WP_023623173.1 | CRISPR-associated endonuclease Cas2 | - |
| EKH72_RS25900 () | 15950..16360 | + | 411 | WP_129831089.1 | hypothetical protein | - |
| EKH72_RS25905 () | 16411..16854 | + | 444 | WP_129831090.1 | hypothetical protein | - |
| EKH72_RS25910 () | 16860..17444 | - | 585 | WP_129831091.1 | DUF2913 family protein | - |
| EKH72_RS25915 () | 17697..18788 | + | 1092 | WP_129831092.1 | hypothetical protein | - |
| EKH72_RS26615 () | 18870..20006 | + | 1137 | WP_206379553.1 | GIY-YIG nuclease family protein | - |
| EKH72_RS25925 () | 20052..20408 | - | 357 | WP_023623164.1 | hypothetical protein | - |
| EKH72_RS25930 () | 20659..20916 | + | 258 | WP_017449219.1 | hypothetical protein | - |
| EKH72_RS25935 () | 21131..22036 | + | 906 | WP_071653130.1 | DUF1738 domain-containing protein | - |
| EKH72_RS25940 () | 22106..22447 | + | 342 | WP_129831093.1 | hypothetical protein | - |
| EKH72_RS25945 () | 22468..23661 | - | 1194 | WP_129831094.1 | ISL3 family transposase ISAeme19 | Transposase |
| EKH72_RS25950 () | 23905..24318 | + | 414 | WP_129831095.1 | antirestriction protein | - |
| EKH72_RS25955 () | 24425..24817 | + | 393 | WP_024700500.1 | hypothetical protein | - |
| EKH72_RS25960 () | 24973..25209 | + | 237 | WP_129831096.1 | hypothetical protein | - |
| EKH72_RS25965 () | 25317..25610 | - | 294 | WP_017449213.1 | hypothetical protein | - |
| EKH72_RS25970 () | 25640..25849 | - | 210 | WP_017449212.1 | hypothetical protein | - |
| EKH72_RS25975 () | 26422..28638 | - | 2217 | WP_129831097.1 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| EKH72_RS25980 () | 28704..29444 | - | 741 | WP_129831098.1 | hypothetical protein | Relaxase |
| EKH72_RS25985 () | 29441..29980 | - | 540 | WP_129831099.1 | DUF1845 domain-containing protein | - |
| EKH72_RS25990 () | 30011..31972 | - | 1962 | WP_129831100.1 | TraM recognition domain-containing protein | - |
| EKH72_RS26000 () | 32966..33373 | - | 408 | WP_024700495.1 | H-NS histone family protein | - |
| EKH72_RS26005 () | 33780..34166 | - | 387 | WP_050914803.1 | hypothetical protein | - |
| EKH72_RS26010 () | 34163..34819 | - | 657 | WP_129831101.1 | hypothetical protein | - |
| EKH72_RS26015 () | 34812..35102 | - | 291 | WP_129831102.1 | hypothetical protein | - |
| EKH72_RS26020 () | 35216..35800 | - | 585 | WP_129831103.1 | hypothetical protein | - |
| EKH72_RS26025 () | 35863..36378 | - | 516 | WP_129831104.1 | Type IV secretion system protein virB1 | VF |
| EKH72_RS26030 () | 36392..36898 | - | 507 | WP_053815815.1 | conjugative transfer signal peptidase TraF | - |
| EKH72_RS26035 () | 37770..37922 | - | 153 | WP_017449302.1 | Hok/Gef family protein | - |
| EKH72_RS26040 () | 38243..38512 | - | 270 | WP_129831106.1 | hypothetical protein | - |
| EKH72_RS26045 () | 38656..39696 | - | 1041 | WP_129831130.1 | trypsin-like serine protease | - |
| EKH72_RS26050 () | 39806..40222 | - | 417 | WP_129831107.1 | hypothetical protein | - |
| EKH72_RS26055 () | 40238..41197 | - | 960 | WP_129831108.1 | type II secretion system GspH family protein | - |
| EKH72_RS26060 () | 41194..41721 | - | 528 | WP_024700480.1 | hypothetical protein | - |
| EKH72_RS26065 () | 41721..42248 | - | 528 | WP_029787212.1 | hypothetical protein | VF |
| EKH72_RS26070 () | 42319..43323 | - | 1005 | WP_129831109.1 | hypothetical protein | - |
| EKH72_RS26075 () | 43320..44942 | - | 1623 | WP_129831110.1 | Flp pilus assembly complex ATPase component TadA | - |
| EKH72_RS26080 () | 44939..45583 | - | 645 | WP_129831051.1 | hypothetical protein | - |
| EKH72_RS26085 () | 45580..45981 | - | 402 | WP_129831111.1 | hypothetical protein | - |
| EKH72_RS26090 () | 46001..46726 | - | 726 | WP_129831112.1 | hypothetical protein | - |
| EKH72_RS26095 () | 46726..48219 | - | 1494 | Protein_47 | type II and III secretion system protein | - |
| EKH72_RS26100 () | 48234..49107 | - | 874 | Protein_48 | hypothetical protein | - |
| EKH72_RS26105 () | 49120..50376 | - | 1257 | WP_129831113.1 | TrbI/VirB10 family protein | - |
| EKH72_RS26110 () | 50369..50791 | - | 423 | WP_071653147.1 | hypothetical protein | - |
| EKH72_RS26115 () | 50791..51663 | - | 873 | WP_129831114.1 | P-type conjugative transfer protein TrbG | - |
| EKH72_RS26120 () | 51672..52347 | - | 676 | Protein_52 | type IV secretion system protein | - |
| EKH72_RS26125 () | 52357..52554 | - | 198 | WP_023623311.1 | hypothetical protein | - |
| EKH72_RS26130 () | 52565..52768 | - | 204 | WP_129831115.1 | hypothetical protein | - |
| EKH72_RS26135 () | 52765..53004 | - | 240 | WP_129831116.1 | hypothetical protein | - |
| EKH72_RS26140 () | 53064..53885 | - | 822 | WP_129831117.1 | P-type conjugative transfer protein TrbL | - |
| EKH72_RS26145 () | 53882..54828 | - | 947 | Protein_57 | P-type conjugative transfer ATPase TrbB | - |
| EKH72_RS26150 () | 54839..55597 | - | 759 | WP_025789735.1 | P-type conjugative transfer protein TrbJ | - |
| EKH72_RS26155 () | 55594..58008 | - | 2415 | WP_129831118.1 | DUF87 domain-containing protein | - |
| EKH72_RS26160 () | 58049..58363 | - | 315 | WP_017449280.1 | VirB3 family type IV secretion system protein | - |
| EKH72_RS26165 () | 58374..58703 | - | 330 | WP_129831119.1 | TrbC/VirB2 family protein | - |
| EKH72_RS26530 () | 58754..58906 | - | 153 | WP_165384594.1 | hypothetical protein | - |
| EKH72_RS26170 () | 59595..60209 | + | 615 | WP_025789731.1 | LexA family transcriptional regulator | - |
| EKH72_RS26175 () | 60619..61518 | + | 900 | WP_129831120.1 | hypothetical protein | - |
| EKH72_RS26535 () | 63026..63217 | - | 192 | Protein_65 | helix-turn-helix domain-containing protein | - |
| EKH72_RS26190 () | 64038..65237 | + | 1200 | WP_071653156.1 | AAA family ATPase | - |
| EKH72_RS26195 () | 65237..66307 | + | 1071 | WP_129831122.1 | ParB/RepB/Spo0J family partition protein | - |
| EKH72_RS26200 () | 66301..66591 | - | 291 | Protein_68 | transposase | - |
| EKH72_RS26205 () | 66801..68720 | - | 1920 | WP_129831123.1 | metallophosphoesterase | - |
| EKH72_RS26620 () | 69164..69454 | - | 291 | Protein_70 | transposase | - |
| EKH72_RS26220 () | 69939..70769 | - | 831 | WP_129831124.1 | hypothetical protein | - |
| EKH72_RS26225 () | 71679..71891 | + | 213 | WP_078231590.1 | hypothetical protein | - |
| EKH72_RS26235 () | 73304..73518 | + | 215 | Protein_73 | IS5/IS1182 family transposase | - |
| EKH72_RS26240 () | 74283..75380 | + | 1098 | WP_129831125.1 | Outer membrane protein A | VF |
| EKH72_RS26245 () | 75398..79633 | + | 4236 | WP_165384595.1 | Ig-like domain-containing protein | - |
| EKH72_RS26250 () | 79926..80105 | - | 180 | WP_165384596.1 | winged helix-turn-helix domain-containing protein | - |
| EKH72_RS26255 () | 80171..80359 | - | 189 | WP_129831127.1 | IS630 family transposase ISSod10 | Transposase |
| EKH72_RS26260 () | 81146..82078 | + | 933 | WP_017449253.1 | OmpA family protein | - |
| EKH72_RS26265 () | 82161..82448 | + | 288 | WP_017449252.1 | hypothetical protein | - |
| EKH72_RS26270 () | 82483..82782 | + | 300 | WP_017449251.1 | hypothetical protein | - |
| EKH72_RS26540 () | 83189..83365 | + | 177 | WP_017449250.1 | hypothetical protein | - |
| EKH72_RS26275 () | 83701..84840 | + | 1140 | WP_129831128.1 | Murein DD-endopeptidase MepM | VF |
| EKH72_RS26285 () | 85241..85453 | + | 213 | WP_129831129.1 | hypothetical protein | - |
| EKH72_RS26290 () | 85469..85786 | - | 318 | WP_017449247.1 | CcdB family protein | - |
| EKH72_RS26295 () | 85786..86031 | - | 246 | WP_017449246.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| EKH72_RS26300 () | 86132..86617 | - | 486 | WP_017449245.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| EKH72_RS26545 () | 86765..86911 | - | 147 | WP_017449244.1 | hypothetical protein | - |
| EKH72_RS26305 () | 87284..88360 | + | 1077 | WP_017449243.1 | replication initiation protein | - |
| EKH72_RS26310 () | 89241..89332 | + | 92 | Protein_89 | DUF3265 domain-containing protein | - |
| EKH72_RS26315 () | 89592..90304 | + | 713 | Protein_90 | AHH domain-containing protein | - |
| EKH72_RS26320 () | 90304..90879 | + | 576 | WP_017449240.1 | hypothetical protein | - |
| EKH72_RS26325 () | 91182..91523 | - | 342 | WP_017449239.1 | endoribonuclease MazF | - |
| EKH72_RS26330 () | 91520..91750 | - | 231 | WP_017449238.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| EKH72_RS26335 () | 92201..92926 | + | 726 | WP_017449237.1 | site-specific integrase | - |
| EKH72_RS26340 () | 92921..93424 | - | 504 | Protein_95 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|