MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 106440 bp
Accession: NZ_CP034296 Location: 1..106440 Organism: Vibrio parahaemolyticus strain 20140829008-1 Replicon: plasmid pVPGD2014-1
Accession: NZ_CP034296 Location: 1..106440 Organism: Vibrio parahaemolyticus strain 20140829008-1 Replicon: plasmid pVPGD2014-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC66_RS25545 () | 1064..1219 | - | 156 | WP_153189414.1 | hypothetical protein | - |
| EHC66_RS25550 () | 1239..1523 | - | 285 | WP_140060192.1 | hypothetical protein | - |
| EHC66_RS25555 () | 1569..1868 | - | 300 | WP_159408317.1 | type I restriction endonuclease subunit M | - |
| EHC66_RS25560 () | 1991..2275 | - | 285 | WP_086370936.1 | hypothetical protein | - |
| EHC66_RS25565 () | 2869..3453 | + | 585 | WP_140060195.1 | DUF2913 family protein | - |
| EHC66_RS25570 () | 3470..3670 | + | 201 | WP_140060196.1 | hypothetical protein | - |
| EHC66_RS25575 () | 4335..4616 | - | 282 | WP_159408189.1 | hypothetical protein | - |
| EHC66_RS25580 () | 5481..6743 | + | 1263 | WP_140065311.1 | hypothetical protein | - |
| EHC66_RS25585 () | 6743..7786 | + | 1044 | WP_140060719.1 | hypothetical protein | - |
| EHC66_RS25590 () | 7925..8275 | - | 351 | WP_140060718.1 | hypothetical protein | - |
| EHC66_RS25595 () | 8589..9191 | + | 603 | WP_023623175.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| EHC66_RS25600 () | 9329..9715 | + | 387 | WP_025792428.1 | hypothetical protein | - |
| EHC66_RS25605 () | 10115..10258 | + | 144 | WP_023623177.1 | hypothetical protein | - |
| EHC66_RS25610 () | 10618..11871 | + | 1254 | WP_025789153.1 | hypothetical protein | - |
| EHC66_RS25615 () | 12253..12878 | + | 626 | Protein_15 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| EHC66_RS25620 () | 12937..13161 | + | 225 | WP_025789152.1 | hypothetical protein | - |
| EHC66_RS25625 () | 13170..13376 | + | 207 | WP_023623181.1 | hypothetical protein | - |
| EHC66_RS25630 () | 13412..13732 | + | 321 | WP_025792429.1 | hypothetical protein | - |
| EHC66_RS25635 () | 14737..15041 | + | 305 | Protein_19 | hypothetical protein | - |
| EHC66_RS25640 () | 15060..16097 | + | 1038 | Protein_20 | IS91 family transposase ISVa3 | Transposase |
| EHC66_RS25645 () | 16481..17002 | + | 522 | WP_025789149.1 | outer membrane beta-barrel protein | - |
| EHC66_RS25650 () | 17145..18128 | + | 984 | WP_017449262.1 | outer membrane beta-barrel protein | - |
| EHC66_RS25655 () | 18205..18706 | + | 502 | Protein_23 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| EHC66_RS25660 () | 19305..19478 | + | 174 | WP_017449264.1 | hypothetical protein | - |
| EHC66_RS25665 () | 19636..20055 | + | 420 | WP_129194448.1 | hypothetical protein | - |
| EHC66_RS25670 () | 20546..21130 | - | 585 | Protein_26 | replication initiation protein | - |
| EHC66_RS25675 () | 21510..21779 | + | 270 | Protein_27 | IS6 family transposase ISSba18 | Transposase |
| EHC66_RS25680 () | 21780..22265 | + | 486 | WP_023624637.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| EHC66_RS25685 () | 22366..22611 | + | 246 | WP_017449246.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| EHC66_RS25690 () | 22611..22928 | + | 318 | WP_023624638.1 | CcdB family protein | - |
| EHC66_RS25695 () | 22944..23156 | - | 213 | WP_127914006.1 | hypothetical protein | - |
| EHC66_RS25700 () | 23545..24684 | - | 1140 | WP_025789523.1 | Murein DD-endopeptidase MepM | VF |
| EHC66_RS25705 () | 25023..25199 | - | 177 | WP_153189439.1 | hypothetical protein | - |
| EHC66_RS25710 () | 25577..25876 | - | 300 | WP_023624643.1 | hypothetical protein | - |
| EHC66_RS25715 () | 25952..26200 | - | 249 | WP_025789522.1 | hypothetical protein | - |
| EHC66_RS25720 () | 26282..27214 | - | 933 | WP_023624644.1 | OmpA family protein | - |
| EHC66_RS25725 () | 28001..28435 | + | 435 | WP_023624645.1 | IS630 family transposase ISSod10 | Transposase |
| EHC66_RS25730 () | 28728..29372 | - | 645 | WP_140060721.1 | DUF1566 domain-containing protein | - |
| EHC66_RS25735 () | 29564..30595 | - | 1032 | WP_159408187.1 | Ig-like domain-containing protein | - |
| EHC66_RS25740 () | 31156..31530 | - | 375 | WP_127914005.1 | hypothetical protein | - |
| EHC66_RS25745 () | 31840..32061 | + | 222 | WP_023624649.1 | hypothetical protein | - |
| EHC66_RS25750 () | 32664..33047 | + | 384 | Protein_42 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| EHC66_RS25755 () | 33042..33767 | - | 726 | WP_017449237.1 | site-specific integrase | - |
| EHC66_RS25760 () | 34218..34448 | + | 231 | WP_017449238.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| EHC66_RS25765 () | 34445..34786 | + | 342 | WP_023624650.1 | endoribonuclease MazF | Toxin Detail |
| EHC66_RS25770 () | 35089..35664 | - | 576 | WP_017449240.1 | hypothetical protein | - |
| EHC66_RS25775 () | 35664..36395 | - | 732 | WP_025789518.1 | AHH domain-containing protein | - |
| EHC66_RS25785 () | 37638..38726 | - | 1089 | WP_086370877.1 | replication initiation protein | - |
| EHC66_RS25790 () | 39060..39698 | - | 639 | Protein_49 | IS5 family transposase ISVpa3 | Transposase |
| EHC66_RS25795 () | 40067..40705 | + | 639 | WP_025789491.1 | hypothetical protein | - |
| EHC66_RS25800 () | 40783..41340 | + | 558 | WP_025789492.1 | hypothetical protein | - |
| EHC66_RS25805 () | 41337..44072 | + | 2736 | WP_025789493.1 | TcfC E-set like domain-containing protein | - |
| EHC66_RS25810 () | 44078..44827 | + | 750 | WP_025789494.1 | hypothetical protein | - |
| EHC66_RS25815 () | 44827..45882 | + | 1056 | WP_025499517.1 | hypothetical protein | - |
| EHC66_RS25820 () | 45882..46802 | + | 921 | WP_025789495.1 | OmpA family protein | - |
| EHC66_RS25825 () | 46806..49577 | + | 2772 | WP_159408186.1 | hypothetical protein | - |
| EHC66_RS25830 () | 49836..50468 | + | 633 | WP_129194440.1 | hypothetical protein | - |
| EHC66_RS25835 () | 50534..50899 | + | 366 | WP_025789498.1 | hypothetical protein | - |
| EHC66_RS25840 () | 51374..51577 | - | 204 | Protein_59 | hypothetical protein | VF |
| EHC66_RS25845 () | 51722..51865 | - | 144 | WP_153189461.1 | hypothetical protein | - |
| EHC66_RS25850 () | 51862..52953 | - | 1092 | Protein_61 | IS3 family transposase | - |
| EHC66_RS25855 () | 53395..54492 | + | 1098 | WP_025792418.1 | Outer membrane protein A | VF |
| EHC66_RS25860 () | 54510..59396 | + | 4887 | WP_159404413.1 | Ig-like domain-containing protein | - |
| EHC66_RS26620 () | 60034..60516 | - | 483 | Protein_64 | DDE-type integrase/transposase/recombinase | - |
| EHC66_RS25865 () | 60824..61324 | + | 501 | WP_157664729.1 | transglutaminase-like cysteine peptidase | - |
| EHC66_RS26625 () | 62500..62790 | + | 291 | Protein_66 | transposase | - |
| EHC66_RS25875 () | 63234..65153 | + | 1920 | WP_086370861.1 | metallophosphoesterase | - |
| EHC66_RS25880 () | 65363..65653 | + | 291 | Protein_68 | transposase | - |
| EHC66_RS25885 () | 65647..66717 | - | 1071 | WP_086370862.1 | ParB/RepB/Spo0J family partition protein | - |
| EHC66_RS25890 () | 66717..67916 | - | 1200 | WP_071653156.1 | AAA family ATPase | - |
| EHC66_RS25895 () | 68636..68716 | + | 81 | Protein_71 | recombinase family protein | - |
| EHC66_RS25900 () | 68851..69595 | + | 745 | Protein_72 | Recombination-promoting nuclease RpnA | VF |
| EHC66_RS25905 () | 70282..70707 | - | 426 | WP_025789544.1 | hypothetical protein | - |
| EHC66_RS26630 () | 70691..71032 | - | 342 | WP_080277469.1 | hypothetical protein | - |
| EHC66_RS25915 () | 72089..72736 | - | 648 | WP_023623169.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| EHC66_RS25920 () | 72914..75940 | + | 3027 | WP_025789702.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| EHC66_RS25925 () | 76022..76426 | + | 405 | Protein_77 | Recombination-promoting nuclease RpnA | VF |
| EHC66_RS25930 () | 76716..77636 | + | 921 | WP_010446562.1 | IS5 family transposase ISVa2 | Transposase |
| EHC66_RS25935 () | 77650..77952 | - | 303 | WP_159408318.1 | hypothetical protein | - |
| EHC66_RS25940 () | 78864..79703 | - | 840 | WP_102591337.1 | hypothetical protein | - |
| EHC66_RS25945 () | 81052..81426 | + | 375 | WP_140342768.1 | TrbC/VirB2 family protein | - |
| EHC66_RS25950 () | 81438..81731 | + | 294 | WP_025789605.1 | VirB3 family type IV secretion system protein | - |
| EHC66_RS25955 () | 81728..84139 | + | 2412 | WP_140342769.1 | conjugal transfer protein TrbE | - |
| EHC66_RS25960 () | 84126..84902 | + | 777 | WP_140342770.1 | P-type conjugative transfer protein TrbJ | - |
| EHC66_RS25965 () | 84917..85138 | + | 222 | WP_140342771.1 | hypothetical protein | - |
| EHC66_RS25970 () | 85189..86916 | + | 1728 | WP_159408319.1 | P-type conjugative transfer protein TrbL | - |
| EHC66_RS25975 () | 86861..87577 | + | 717 | WP_025789609.1 | type IV secretion system protein | - |
| EHC66_RS25980 () | 87595..88527 | + | 933 | WP_140342773.1 | P-type conjugative transfer protein TrbG | - |
| EHC66_RS25985 () | 88536..88961 | + | 426 | WP_086597983.1 | hypothetical protein | - |
| EHC66_RS25990 () | 89086..90237 | + | 1152 | WP_140342776.1 | conjugal transfer protein TrbI | - |
| EHC66_RS25995 () | 90329..90781 | + | 453 | WP_140342774.1 | hypothetical protein | - |
| EHC66_RS26000 () | 90914..91444 | + | 531 | WP_140342775.1 | Outer membrane porin F | VF |
| EHC66_RS26005 () | 91942..92337 | - | 396 | WP_140060180.1 | hypothetical protein | - |
| EHC66_RS26010 () | 92537..94486 | + | 1950 | WP_140065305.1 | type IV secretory system conjugative DNA transfer family protein | - |
| EHC66_RS26015 () | 94483..95019 | + | 537 | WP_140060181.1 | conjugative transfer signal peptidase TraF | - |
| EHC66_RS26020 () | 95034..95474 | + | 441 | WP_086370918.1 | hypothetical protein | - |
| EHC66_RS26025 () | 95628..97832 | + | 2205 | WP_140065307.1 | DNA topoisomerase 3 | - |
| EHC66_RS26030 () | 97883..98395 | + | 513 | WP_140060182.1 | restriction endonuclease | - |
| EHC66_RS26035 () | 98398..98907 | + | 510 | WP_140060183.1 | Type IV secretion system protein virB1 | VF |
| EHC66_RS26040 () | 98900..99079 | + | 180 | WP_140060184.1 | hypothetical protein | - |
| EHC66_RS26045 () | 99072..100529 | + | 1458 | WP_159408184.1 | DUF1738 domain-containing protein | - |
| EHC66_RS26050 () | 100573..101151 | + | 579 | WP_086370927.1 | hypothetical protein | - |
| EHC66_RS26055 () | 101163..101756 | + | 594 | WP_025789626.1 | hypothetical protein | - |
| EHC66_RS26060 () | 101909..103624 | - | 1716 | WP_159408320.1 | Protein TraI | Relaxase |
| EHC66_RS26065 () | 103684..104001 | - | 318 | WP_140060188.1 | hypothetical protein | - |
| EHC66_RS26070 () | 104277..104660 | + | 384 | WP_140060189.1 | hypothetical protein | - |
| EHC66_RS26075 () | 104690..105448 | + | 759 | WP_140060190.1 | AAA family ATPase | - |
| EHC66_RS26080 () | 105445..106053 | + | 609 | WP_140060191.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|