MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 108287 bp
Accession: NZ_CP034287 Location: 1..108287 Organism: Vibrio parahaemolyticus strain 20140624012-1 Replicon: plasmid pVPHB2014-1
Accession: NZ_CP034287 Location: 1..108287 Organism: Vibrio parahaemolyticus strain 20140624012-1 Replicon: plasmid pVPHB2014-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC70_RS25070 () | 1937..2656 | - | 720 | WP_159404401.1 | OmpA family protein | - |
| EHC70_RS25075 () | 2628..2840 | - | 213 | WP_159404402.1 | hypothetical protein | - |
| EHC70_RS25080 () | 2840..3082 | - | 243 | WP_159404403.1 | hypothetical protein | - |
| EHC70_RS25085 () | 3088..3894 | - | 807 | WP_159404404.1 | hypothetical protein | - |
| EHC70_RS25090 () | 3894..4643 | - | 750 | WP_025789494.1 | hypothetical protein | - |
| EHC70_RS25095 () | 4649..7384 | - | 2736 | WP_025789493.1 | TcfC E-set like domain-containing protein | - |
| EHC70_RS25100 () | 7381..7938 | - | 558 | WP_025789492.1 | hypothetical protein | - |
| EHC70_RS25105 () | 8016..8654 | - | 639 | WP_025789491.1 | hypothetical protein | - |
| EHC70_RS25110 () | 9022..9660 | + | 639 | Protein_9 | IS5 family transposase ISVpa3 | Transposase |
| EHC70_RS25115 () | 9994..11082 | + | 1089 | WP_086370877.1 | replication initiation protein | - |
| EHC70_RS25125 () | 12325..13056 | + | 732 | WP_025789518.1 | AHH domain-containing protein | - |
| EHC70_RS25130 () | 13056..13631 | + | 576 | WP_017449240.1 | hypothetical protein | - |
| EHC70_RS25135 () | 13934..14275 | - | 342 | WP_023624650.1 | endoribonuclease MazF | Toxin Detail |
| EHC70_RS25140 () | 14272..14502 | - | 231 | WP_017449238.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| EHC70_RS25145 () | 14953..15678 | + | 726 | WP_017449237.1 | site-specific integrase | - |
| EHC70_RS25150 () | 15673..16056 | - | 384 | Protein_16 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| EHC70_RS25155 () | 16659..16880 | - | 222 | WP_023624649.1 | hypothetical protein | - |
| EHC70_RS25160 () | 17190..17564 | + | 375 | WP_042761155.1 | hypothetical protein | - |
| EHC70_RS25165 () | 18125..19129 | + | 1005 | WP_158501040.1 | Ig-like domain-containing protein | - |
| EHC70_RS25170 () | 19095..19727 | + | 633 | WP_023624646.1 | Ig-like domain-containing protein | - |
| EHC70_RS25175 () | 20188..20622 | - | 435 | WP_023624645.1 | IS630 family transposase ISSod10 | Transposase |
| EHC70_RS25180 () | 21409..22341 | + | 933 | WP_023624644.1 | OmpA family protein | - |
| EHC70_RS25185 () | 22423..22671 | + | 249 | WP_025789522.1 | hypothetical protein | - |
| EHC70_RS25190 () | 22747..23046 | + | 300 | WP_023624643.1 | hypothetical protein | - |
| EHC70_RS25195 () | 23424..23600 | + | 177 | WP_023624642.1 | hypothetical protein | - |
| EHC70_RS25200 () | 23939..25078 | + | 1140 | WP_025789523.1 | Murein DD-endopeptidase MepM | VF |
| EHC70_RS25205 () | 25467..25679 | + | 213 | WP_127914006.1 | hypothetical protein | - |
| EHC70_RS25210 () | 25695..26012 | - | 318 | WP_023624638.1 | CcdB family protein | - |
| EHC70_RS25215 () | 26012..26257 | - | 246 | WP_017449246.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| EHC70_RS25220 () | 26357..26842 | - | 486 | WP_023624637.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| EHC70_RS25225 () | 26843..27112 | - | 270 | Protein_31 | IS6 family transposase ISSba18 | Transposase |
| EHC70_RS25230 () | 27492..28076 | + | 585 | Protein_32 | replication initiation protein | - |
| EHC70_RS25235 () | 28567..28986 | - | 420 | WP_129194448.1 | hypothetical protein | - |
| EHC70_RS25240 () | 29144..29317 | - | 174 | WP_017449264.1 | hypothetical protein | - |
| EHC70_RS25245 () | 29916..30417 | - | 502 | Protein_35 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| EHC70_RS25250 () | 30494..31477 | - | 984 | WP_017449262.1 | outer membrane beta-barrel protein | - |
| EHC70_RS25255 () | 31620..32141 | - | 522 | WP_025789149.1 | outer membrane beta-barrel protein | - |
| EHC70_RS25260 () | 32609..33586 | - | 978 | Protein_38 | transposase | - |
| EHC70_RS25265 () | 33605..33909 | - | 305 | Protein_39 | hypothetical protein | - |
| EHC70_RS25270 () | 34903..35235 | - | 333 | WP_159404405.1 | hypothetical protein | - |
| EHC70_RS25275 () | 35271..35477 | - | 207 | WP_023623181.1 | hypothetical protein | - |
| EHC70_RS25280 () | 35486..35710 | - | 225 | WP_025789152.1 | hypothetical protein | - |
| EHC70_RS25285 () | 35769..36394 | - | 626 | Protein_43 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| EHC70_RS25290 () | 36776..38029 | - | 1254 | WP_023623178.1 | hypothetical protein | - |
| EHC70_RS25295 () | 38389..38532 | - | 144 | WP_023623177.1 | hypothetical protein | - |
| EHC70_RS25300 () | 38932..39318 | - | 387 | WP_025792428.1 | hypothetical protein | - |
| EHC70_RS25305 () | 39456..40058 | - | 603 | WP_023623175.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| EHC70_RS25310 () | 40429..41019 | + | 591 | WP_159404406.1 | hypothetical protein | - |
| EHC70_RS25315 () | 41021..43642 | + | 2622 | WP_159404407.1 | toll/interleukin-1 receptor domain-containing protein | - |
| EHC70_RS25320 () | 45136..45336 | - | 201 | WP_086370937.1 | hypothetical protein | - |
| EHC70_RS25325 () | 45353..45937 | - | 585 | WP_023625126.1 | DUF2913 family protein | - |
| EHC70_RS25330 () | 46377..46664 | + | 288 | WP_023625127.1 | hypothetical protein | - |
| EHC70_RS25335 () | 46820..47725 | + | 906 | WP_078231471.1 | DUF1738 domain-containing protein | - |
| EHC70_RS25340 () | 47795..48136 | + | 342 | WP_071653131.1 | hypothetical protein | - |
| EHC70_RS25345 () | 48297..48710 | + | 414 | WP_159404408.1 | antirestriction protein | - |
| EHC70_RS25350 () | 48815..49219 | + | 405 | WP_031500119.1 | hypothetical protein | - |
| EHC70_RS25355 () | 49331..49594 | + | 264 | WP_031500117.1 | hypothetical protein | - |
| EHC70_RS25360 () | 49646..49846 | - | 201 | WP_159404409.1 | hypothetical protein | - |
| EHC70_RS25365 () | 49879..50178 | - | 300 | WP_029559533.1 | hypothetical protein | - |
| EHC70_RS25370 () | 51050..51277 | - | 228 | WP_031500112.1 | hypothetical protein | - |
| EHC70_RS25375 () | 51274..53486 | - | 2213 | Protein_61 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| EHC70_RS25380 () | 53552..54292 | - | 741 | WP_025789168.1 | hypothetical protein | Relaxase |
| EHC70_RS25385 () | 54289..54828 | - | 540 | WP_025789169.1 | hypothetical protein | - |
| EHC70_RS25390 () | 54859..56820 | - | 1962 | WP_122045222.1 | TraM recognition domain-containing protein | - |
| EHC70_RS25395 () | 57814..58221 | - | 408 | WP_086598014.1 | H-NS histone family protein | - |
| EHC70_RS25400 () | 58628..59014 | - | 387 | WP_050914803.1 | hypothetical protein | - |
| EHC70_RS25405 () | 59011..59712 | - | 702 | WP_140300726.1 | hypothetical protein | - |
| EHC70_RS25410 () | 59709..59990 | - | 282 | WP_023623162.1 | hypothetical protein | - |
| EHC70_RS25415 () | 60129..60431 | - | 303 | WP_029559471.1 | hypothetical protein | - |
| EHC70_RS25420 () | 61054..61635 | - | 582 | WP_050914800.1 | hypothetical protein | - |
| EHC70_RS25425 () | 61700..62215 | - | 516 | WP_050914799.1 | Type IV secretion system protein virB1 | VF |
| EHC70_RS25430 () | 62229..62735 | - | 507 | WP_050914798.1 | conjugative transfer signal peptidase TraF | - |
| EHC70_RS25435 () | 62752..63129 | - | 378 | WP_023623402.1 | hypothetical protein | - |
| EHC70_RS25440 () | 63292..63558 | - | 267 | WP_050914797.1 | hypothetical protein | - |
| EHC70_RS25445 () | 63702..64757 | - | 1056 | WP_159404415.1 | trypsin-like serine protease | - |
| EHC70_RS25450 () | 64867..65283 | - | 417 | WP_159404410.1 | hypothetical protein | - |
| EHC70_RS25455 () | 65299..66258 | - | 960 | WP_159404411.1 | type II secretion system GspH family protein | - |
| EHC70_RS25460 () | 66255..66782 | - | 528 | WP_140062535.1 | hypothetical protein | - |
| EHC70_RS25465 () | 66782..67309 | - | 528 | WP_029787212.1 | hypothetical protein | VF |
| EHC70_RS25470 () | 67380..68384 | - | 1005 | WP_159404412.1 | hypothetical protein | - |
| EHC70_RS25475 () | 68381..70002 | - | 1622 | Protein_81 | Type II secretion system protein E | VF |
| EHC70_RS25480 () | 69999..70643 | - | 645 | WP_025789146.1 | hypothetical protein | - |
| EHC70_RS25485 () | 70640..71770 | - | 1131 | WP_025789145.1 | hypothetical protein | - |
| EHC70_RS25490 () | 71770..73257 | - | 1488 | WP_159404416.1 | hypothetical protein | VF |
| EHC70_RS25495 () | 73272..74144 | - | 873 | WP_140130641.1 | hypothetical protein | - |
| EHC70_RS25500 () | 74157..75413 | - | 1257 | WP_156216765.1 | Type IV secretion system protein virB10 | VF |
| EHC70_RS25505 () | 75406..75828 | - | 423 | WP_017449288.1 | hypothetical protein | - |
| EHC70_RS25510 () | 75828..76700 | - | 873 | WP_156216767.1 | P-type conjugative transfer protein TrbG | - |
| EHC70_RS25515 () | 76709..77383 | - | 675 | WP_078231497.1 | type IV secretion system protein | - |
| EHC70_RS25520 () | 77393..77590 | - | 198 | WP_023623311.1 | hypothetical protein | - |
| EHC70_RS25525 () | 77601..78914 | - | 1314 | WP_156216769.1 | P-type conjugative transfer protein TrbL | - |
| EHC70_RS25530 () | 78911..79858 | - | 948 | WP_029864803.1 | Type IV secretion system protein VirB11 | VF |
| EHC70_RS25535 () | 79869..80627 | - | 759 | WP_149151359.1 | P-type conjugative transfer protein TrbJ | - |
| EHC70_RS25540 () | 80624..83038 | - | 2415 | WP_149151358.1 | DUF87 domain-containing protein | - |
| EHC70_RS25545 () | 83079..83393 | - | 315 | WP_149151357.1 | VirB3 family type IV secretion system protein | - |
| EHC70_RS25550 () | 83404..83733 | - | 330 | WP_044140172.1 | TrbC/VirB2 family protein | - |
| EHC70_RS25555 () | 83784..83936 | - | 153 | WP_032072624.1 | hypothetical protein | - |
| EHC70_RS25560 () | 84014..84310 | + | 297 | WP_149151356.1 | hypothetical protein | - |
| EHC70_RS25565 () | 84646..85293 | + | 648 | WP_025983428.1 | XRE family transcriptional regulator | - |
| EHC70_RS25570 () | 85760..86593 | + | 834 | WP_049873589.1 | hypothetical protein | - |
| EHC70_RS25575 () | 88099..88290 | - | 192 | WP_078231584.1 | helix-turn-helix domain-containing protein | - |
| EHC70_RS25580 () | 89005..90204 | + | 1200 | WP_017449270.1 | ParA family protein | - |
| EHC70_RS25585 () | 90204..91274 | + | 1071 | WP_025792424.1 | ParB/RepB/Spo0J family partition protein | - |
| EHC70_RS25590 () | 91268..91558 | - | 291 | Protein_104 | transposase | - |
| EHC70_RS25595 () | 91768..93687 | - | 1920 | WP_025792422.1 | metallophosphoesterase | - |
| EHC70_RS26155 () | 94131..94421 | - | 291 | Protein_106 | transposase | - |
| EHC70_RS25605 () | 95597..96190 | - | 594 | WP_157802688.1 | transglutaminase-like cysteine peptidase | - |
| EHC70_RS26160 () | 96405..96887 | + | 483 | Protein_108 | DDE-type integrase/transposase/recombinase | - |
| EHC70_RS25610 () | 97525..102411 | - | 4887 | WP_159404413.1 | Ig-like domain-containing protein | - |
| EHC70_RS25615 () | 102429..103526 | - | 1098 | WP_023624924.1 | Outer membrane protein A | VF |
| EHC70_RS25620 () | 103971..105148 | + | 1178 | WP_140342766.1 | IS3 family transposase ISVch4 | Transposase |
| EHC70_RS25625 () | 105145..105288 | + | 144 | WP_156216758.1 | hypothetical protein | - |
| EHC70_RS25630 () | 105431..105649 | + | 219 | WP_086597967.1 | hypothetical protein | VF |
| EHC70_RS25635 () | 106109..106468 | - | 360 | WP_127914002.1 | hypothetical protein | - |
| EHC70_RS25640 () | 106540..107190 | - | 651 | WP_131162787.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|