MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 47642 bp
Accession: NZ_CP034286 Location: 1484249..1531890 Organism: Vibrio parahaemolyticus strain 20140624012-1 Replicon: chromosome
Accession: NZ_CP034286 Location: 1484249..1531890 Organism: Vibrio parahaemolyticus strain 20140624012-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC70_RS23465 () | 1479439..1479825 | + | 387 | WP_108653711.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EHC70_RS23470 () | 1479834..1482422 | + | 2589 | WP_108653742.1 | type IV secretion system protein TraC | - |
| EHC70_RS23475 () | 1482419..1482766 | + | 348 | WP_029863998.1 | type-F conjugative transfer system protein TrbI | - |
| EHC70_RS23480 () | 1482778..1483443 | + | 666 | WP_164503348.1 | type-F conjugative transfer system protein TraW | - |
| EHC70_RS23485 () | 1483440..1484447 | + | 1008 | WP_108653710.1 | conjugal transfer pilus assembly protein TraU | - |
| EHC70_RS23490 () | 1484459..1485034 | + | 576 | WP_108653709.1 | hypothetical protein | - |
| EHC70_RS23495 () | 1485038..1485646 | + | 609 | WP_108653708.1 | hypothetical protein | - |
| EHC70_RS23500 () | 1485763..1486470 | + | 708 | WP_108653707.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EHC70_RS23505 () | 1486467..1488203 | + | 1737 | WP_108653706.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EHC70_RS23510 () | 1488193..1489017 | + | 825 | WP_108653705.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EHC70_RS23515 () | 1489039..1489452 | + | 414 | WP_108653704.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EHC70_RS23520 () | 1489663..1491072 | + | 1410 | WP_108653703.1 | conjugal transfer protein TraH | - |
| EHC70_RS23525 () | 1491076..1493883 | + | 2808 | WP_108653702.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| EHC70_RS23530 () | 1493963..1494520 | + | 558 | WP_108653701.1 | hypothetical protein | - |
| EHC70_RS23535 () | 1494673..1496766 | + | 2094 | WP_108653700.1 | type IV conjugative transfer system coupling protein TraD | - |
| EHC70_RS23540 () | 1496991..1497734 | + | 744 | WP_108653699.1 | endonuclease | - |
| EHC70_RS23545 () | 1497935..1498084 | + | 150 | WP_108653698.1 | Hok/Gef family protein | - |
| EHC70_RS23550 () | 1498188..1503983 | + | 5796 | WP_108653697.1 | conjugative transfer relaxase/helicase TraI | - |
| EHC70_RS23555 () | 1504004..1504363 | - | 360 | WP_108653741.1 | hypothetical protein | - |
| EHC70_RS23560 () | 1504923..1505366 | - | 444 | WP_031428056.1 | hypothetical protein | VF |
| EHC70_RS23565 () | 1505420..1505762 | - | 343 | Protein_1321 | type I restriction endonuclease subunit M | - |
| EHC70_RS23570 () | 1505836..1506222 | - | 387 | WP_031428057.1 | hypothetical protein | - |
| EHC70_RS23575 () | 1506226..1506606 | - | 381 | WP_031428060.1 | hypothetical protein | - |
| EHC70_RS23580 () | 1507614..1507835 | - | 222 | WP_031428062.1 | hypothetical protein | - |
| EHC70_RS23585 () | 1509257..1509472 | - | 216 | WP_031428064.1 | hypothetical protein | - |
| EHC70_RS23590 () | 1510021..1510515 | - | 495 | WP_031428066.1 | hypothetical protein | - |
| EHC70_RS23595 () | 1510915..1511187 | - | 273 | WP_159404360.1 | hypothetical protein | - |
| EHC70_RS23600 () | 1511743..1512345 | + | 603 | WP_031428068.1 | DUF2913 family protein | - |
| EHC70_RS23605 () | 1512381..1512869 | - | 489 | WP_031428070.1 | DNA repair protein RadC | - |
| EHC70_RS23610 () | 1513719..1514999 | + | 1281 | WP_108653694.1 | SgrR family transcriptional regulator | - |
| EHC70_RS23615 () | 1515066..1515431 | + | 366 | WP_031428075.1 | hypothetical protein | - |
| EHC70_RS23620 () | 1515775..1516713 | - | 939 | WP_031428077.1 | DMT family transporter | - |
| EHC70_RS23625 () | 1516817..1517467 | + | 651 | WP_159404361.1 | HTH-type transcriptional regulator CatM | VF |
| EHC70_RS23630 () | 1517425..1517697 | + | 273 | Protein_1334 | hypothetical protein | - |
| EHC70_RS23635 () | 1517901..1518389 | - | 489 | WP_108653692.1 | DUF523 domain-containing protein | - |
| EHC70_RS23640 () | 1518507..1519043 | - | 537 | WP_108653691.1 | ClbS/DfsB family four-helix bundle protein | - |
| EHC70_RS23645 () | 1519111..1519179 | - | 69 | WP_080254664.1 | DUF3265 domain-containing protein | - |
| EHC70_RS23650 () | 1519254..1519502 | + | 249 | WP_025611568.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| EHC70_RS23655 () | 1519492..1519782 | + | 291 | WP_108653690.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EHC70_RS23660 () | 1519935..1520204 | - | 270 | WP_029865924.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| EHC70_RS23665 () | 1520197..1520451 | - | 255 | WP_029865959.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| EHC70_RS23670 () | 1520553..1520645 | - | 93 | WP_140321407.1 | DUF3265 domain-containing protein | - |
| EHC70_RS23675 () | 1520760..1521728 | + | 969 | WP_159404068.1 | IS30 family transposase ISVa6 | Transposase |
| EHC70_RS23680 () | 1522194..1522343 | - | 150 | WP_108654761.1 | DUF3265 domain-containing protein | - |
| EHC70_RS23685 () | 1522318..1522785 | - | 468 | WP_108654760.1 | NUDIX domain-containing protein | - |
| EHC70_RS23690 () | 1522891..1523883 | - | 993 | WP_108654759.1 | hypothetical protein | - |
| EHC70_RS23695 () | 1524597..1525667 | + | 1071 | WP_108653902.1 | hypothetical protein | - |
| EHC70_RS23700 () | 1525800..1526630 | + | 831 | WP_108653901.1 | hypothetical protein | - |
| EHC70_RS23705 () | 1526635..1526964 | + | 330 | WP_031428126.1 | hypothetical protein | - |
| EHC70_RS23710 () | 1527171..1528247 | - | 1077 | WP_031428128.1 | glycerol dehydrogenase | - |
| EHC70_RS23715 () | 1528306..1529706 | - | 1401 | WP_102780305.1 | aldehyde dehydrogenase family protein | - |
| EHC70_RS23720 () | 1529724..1530914 | - | 1191 | WP_159404363.1 | FIST C-terminal domain-containing protein | - |
| EHC70_RS23725 () | 1531239..1531928 | - | 690 | WP_159404364.1 | EAL domain-containing protein | - |
| EHC70_RS23730 () | 1531939..1532991 | - | 1053 | WP_159404365.1 | hypothetical protein | - |
| EHC70_RS23735 () | 1532988..1533656 | - | 669 | WP_031428140.1 | molecular chaperone | - |
| EHC70_RS23740 () | 1533635..1536112 | - | 2478 | WP_159404366.1 | hypothetical protein | - |
| EHC70_RS23745 () | 1536201..1536746 | - | 546 | WP_031428144.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|