MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 87660 bp
Accession: NZ_CP034236 Location: 4566560..4654219 Organism: Pectobacterium carotovorum subsp. carotovorum strain BP201601.1 Replicon: chromosome
Accession: NZ_CP034236 Location: 4566560..4654219 Organism: Pectobacterium carotovorum subsp. carotovorum strain BP201601.1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EH203_RS20455 () | 4562995..4563483 | + | 489 | WP_039474653.1 | transcription/translation regulatory transformer protein RfaH | - |
| EH203_RS20460 () | 4563563..4564585 | - | 1023 | WP_039508480.1 | porphobilinogen synthase | - |
| EH203_RS20465 () | 4564603..4565385 | - | 783 | WP_161502967.1 | 3'-5' ssDNA/RNA exonuclease TatD | - |
| EH203_RS20470 () | 4565464..4566216 | - | 753 | WP_010298656.1 | Sec-independent protein translocase subunit TatC | - |
| EH203_RS20475 () | 4566220..4566831 | - | 612 | WP_161502968.1 | Sec-independent protein translocase protein TatB | - |
| EH203_RS20480 () | 4566835..4567095 | - | 261 | WP_010298651.1 | Sec-independent protein translocase subunit TatA | - |
| EH203_RS20485 () | 4567178..4568818 | - | 1641 | WP_010298649.1 | ubiquinone biosynthesis regulatory protein kinase UbiB | - |
| EH203_RS20490 () | 4568815..4569438 | - | 624 | WP_103943038.1 | SCP2 domain-containing protein | - |
| EH203_RS20495 () | 4569451..4570206 | - | 756 | WP_010283801.1 | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | - |
| EH203_RS20500 () | 4570338..4571899 | - | 1562 | Protein_4006 | DNA recombination protein RmuC | - |
| EH203_RS20505 () | 4572250..4573623 | - | 1374 | WP_039474646.1 | argininosuccinate lyase | - |
| EH203_RS20510 () | 4573686..4574462 | - | 777 | WP_029367985.1 | acetylglutamate kinase | - |
| EH203_RS20515 () | 4574497..4575501 | - | 1005 | WP_039508471.1 | N-acetyl-gamma-glutamyl-phosphate reductase | - |
| EH203_RS20520 () | 4575704..4576855 | + | 1152 | WP_130587448.1 | acetylornithine deacetylase | - |
| EH203_RS20525 () | 4576910..4577623 | + | 714 | WP_010298630.1 | GntR family transcriptional regulator | - |
| EH203_RS20530 () | 4577632..4578831 | - | 1200 | WP_161502969.1 | starvation-sensing protein RspA | - |
| EH203_RS20535 () | 4579153..4580541 | + | 1389 | WP_010298627.1 | PTS transporter subunit EIIC | - |
| EH203_RS20540 () | 4580785..4583424 | + | 2640 | WP_039474639.1 | phosphoenolpyruvate carboxylase | - |
| EH203_RS20545 () | 4583567..4584349 | - | 783 | WP_010298623.1 | tyrosine-protein phosphatase | - |
| EH203_RS20550 () | 4584499..4585269 | - | 771 | WP_010283777.1 | uridine phosphorylase | - |
| EH203_RS20555 () | 4585600..4586427 | + | 828 | WP_161502970.1 | dienelactone hydrolase family protein | - |
| EH203_RS20560 () | 4586538..4588199 | - | 1662 | WP_010298618.1 | Methyl-accepting chemotaxis protein I | VF |
| EH203_RS20565 () | 4588887..4590509 | - | 1623 | WP_010298616.1 | Methyl-accepting chemotaxis protein I | VF |
| EH203_RS20570 () | 4591171..4593435 | - | 2265 | WP_161502971.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| EH203_RS20575 () | 4593540..4594475 | + | 936 | WP_010298610.1 | HTH-type transcriptional regulator MetR | - |
| EH203_RS20580 () | 4594381..4595280 | - | 900 | WP_010298607.1 | carboxylate/amino acid/amine transporter | - |
| EH203_RS20585 () | 4595516..4595848 | - | 333 | WP_052235332.1 | YjeO family protein | - |
| EH203_RS20590 () | 4595849..4596565 | - | 717 | WP_039508458.1 | hypothetical protein | - |
| EH203_RS20595 () | 4596582..4597061 | - | 480 | WP_010300799.1 | Major exported protein | VF |
| EH203_RS20600 () | 4597503..4598156 | - | 654 | WP_010300796.1 | lipid IV(A) palmitoyltransferase PagP | - |
| EH203_RS20605 () | 4598463..4599284 | - | 822 | WP_010283739.1 | Serine acetyltransferase | VF |
| EH203_RS20610 () | 4599427..4600446 | - | 1020 | WP_010300792.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| EH203_RS20615 () | 4600446..4600916 | - | 471 | WP_010283737.1 | protein-export chaperone SecB | - |
| EH203_RS20620 () | 4601136..4601567 | - | 432 | WP_010300789.1 | rhodanese-like domain-containing protein | - |
| EH203_RS20625 () | 4601813..4603114 | + | 1302 | WP_161502972.1 | murein hydrolase activator EnvC | - |
| EH203_RS20630 () | 4603117..4604064 | + | 948 | WP_010300784.1 | divergent polysaccharide deacetylase family protein | - |
| EH203_RS20635 () | 4604116..4605147 | - | 1032 | WP_161502973.1 | L-threonine 3-dehydrogenase | - |
| EH203_RS20640 () | 4605158..4606354 | - | 1197 | WP_161502974.1 | 2-amino-3-ketobutyrate coenzyme A ligase | VF |
| EH203_RS20645 () | 4606597..4607529 | + | 933 | WP_039474610.1 | ADP-L-glycero-D-manno-heptose-6-epimerase | VF |
| EH203_RS20650 () | 4607553..4608656 | + | 1104 | WP_039474608.1 | ADP-heptose--LPS heptosyltransferase 2 | VF |
| EH203_RS20655 () | 4608653..4609615 | + | 963 | WP_161502975.1 | Lipopolysaccharide heptosyltransferase 1 | VF |
| EH203_RS20660 () | 4609633..4610718 | + | 1086 | WP_161502976.1 | putative lipopolysaccharide heptosyltransferase III | - |
| EH203_RS20665 () | 4610780..4612027 | + | 1248 | WP_010300757.1 | O-antigen ligase family protein | - |
| EH203_RS20670 () | 4612172..4612945 | + | 774 | WP_161502977.1 | Glucosyl-3-phosphoglycerate synthase | VF |
| EH203_RS20675 () | 4613030..4614307 | + | 1278 | WP_010300751.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| EH203_RS20680 () | 4614346..4614825 | + | 480 | WP_010300748.1 | Phosphopantetheine adenylyltransferase | VF |
| EH203_RS20685 () | 4614834..4615808 | - | 975 | WP_161502978.1 | glycosyltransferase family 9 protein | - |
| EH203_RS20690 () | 4615875..4616684 | - | 810 | WP_010300742.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | - |
| EH203_RS20695 () | 4616918..4617085 | - | 168 | WP_002208990.1 | 50S ribosomal protein L33 | - |
| EH203_RS20700 () | 4617097..4617333 | - | 237 | WP_005967968.1 | 50S ribosomal protein L28 | - |
| EH203_RS20705 () | 4617571..4618236 | - | 666 | WP_039474579.1 | DNA repair protein RadC | - |
| EH203_RS20710 () | 4618423..4619667 | + | 1245 | WP_202618505.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| EH203_RS20715 () | 4619645..4620103 | + | 459 | WP_010285710.1 | dUTP diphosphatase | - |
| EH203_RS20720 () | 4620232..4620828 | + | 597 | WP_010300736.1 | nucleoid occlusion factor SlmA | - |
| EH203_RS20725 () | 4620892..4621533 | - | 642 | WP_039474577.1 | orotate phosphoribosyltransferase | - |
| EH203_RS20730 () | 4621740..4622456 | - | 717 | WP_039364080.1 | ribonuclease PH | - |
| EH203_RS20735 () | 4622658..4623626 | + | 969 | WP_039278611.1 | L-Ala-D/L-Glu epimerase | - |
| EH203_RS20740 () | 4623671..4625542 | + | 1872 | WP_161503092.1 | Glutathione import ATP-binding protein GsiA | VF |
| EH203_RS20745 () | 4625631..4627172 | + | 1542 | WP_040032285.1 | glutathione ABC transporter substrate-binding protein | - |
| EH203_RS20750 () | 4627191..4628111 | + | 921 | WP_014913740.1 | ABC transporter permease subunit | - |
| EH203_RS20755 () | 4628120..4629019 | + | 900 | WP_010300708.1 | ABC transporter permease subunit | - |
| EH203_RS20760 () | 4629046..4630104 | + | 1059 | WP_161503093.1 | P1 family peptidase | - |
| EH203_RS20765 () | 4630131..4630952 | + | 822 | WP_040032283.1 | M55 family metallopeptidase | - |
| EH203_RS20770 () | 4631012..4631959 | + | 948 | WP_161502980.1 | isoaspartyl peptidase/L-asparaginase | - |
| EH203_RS20775 () | 4632164..4633072 | + | 909 | WP_161502981.1 | LysR family transcriptional regulator | - |
| EH203_RS20780 () | 4633171..4634034 | + | 864 | WP_161502982.1 | YicC family protein | - |
| EH203_RS20785 () | 4634227..4635489 | + | 1263 | WP_161502983.1 | Prophage integrase IntA ; Integrase | Integrase |
| EH203_RS20790 () | 4635560..4635916 | - | 357 | WP_161502984.1 | acyl-CoA dehydrogenase | - |
| EH203_RS20795 () | 4635939..4636484 | - | 546 | WP_161502985.1 | hypothetical protein | - |
| EH203_RS20800 () | 4636733..4637107 | + | 375 | WP_161502986.1 | helix-turn-helix domain-containing protein | - |
| EH203_RS20805 () | 4637620..4637820 | + | 201 | WP_161502987.1 | AlpA family phage regulatory protein | - |
| EH203_RS20810 () | 4637899..4638939 | + | 1041 | WP_161502988.1 | hypothetical protein | - |
| EH203_RS20815 () | 4639209..4640258 | + | 1050 | WP_161502989.1 | hypothetical protein | - |
| EH203_RS20820 () | 4640445..4640825 | - | 381 | WP_161502990.1 | sce7726 family protein | - |
| EH203_RS20825 () | 4640943..4641986 | + | 1044 | WP_161502991.1 | hypothetical protein | - |
| EH203_RS20830 () | 4641998..4642636 | + | 639 | WP_161502992.1 | hypothetical protein | - |
| EH203_RS20835 () | 4643142..4643504 | - | 363 | WP_161502993.1 | hypothetical protein | - |
| EH203_RS20840 () | 4643849..4644156 | + | 308 | Protein_4074 | hypothetical protein | - |
| EH203_RS20845 () | 4644399..4645223 | + | 825 | WP_010300683.1 | DNA damage-inducible protein D | - |
| EH203_RS20850 () | 4645562..4645783 | + | 222 | WP_010300679.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| EH203_RS20855 () | 4645780..4646169 | + | 390 | WP_010300678.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| EH203_RS20860 () | 4646512..4647306 | + | 795 | WP_010300676.1 | class I SAM-dependent methyltransferase | - |
| EH203_RS20865 () | 4647585..4648142 | + | 558 | WP_010300674.1 | hypothetical protein | - |
| EH203_RS20870 () | 4648190..4648735 | - | 546 | WP_010300672.1 | hypothetical protein | - |
| EH203_RS20875 () | 4648849..4649235 | + | 387 | WP_010300669.1 | hypothetical protein | - |
| EH203_RS20880 () | 4649332..4649640 | + | 309 | WP_146619640.1 | DUF596 domain-containing protein | - |
| EH203_RS20885 () | 4649651..4650865 | - | 1215 | WP_010300665.1 | AI-2E family transporter | - |
| EH203_RS20890 () | 4650959..4651459 | - | 501 | WP_010300663.1 | GrpB family protein | - |
| EH203_RS20895 () | 4651566..4652726 | - | 1161 | WP_010300661.1 | FMN-dependent L-lactate dehydrogenase LldD | - |
| EH203_RS20900 () | 4652926..4654365 | - | 1440 | WP_039508378.1 | aldehyde dehydrogenase | - |
| EH203_RS20905 () | 4654655..4655584 | - | 930 | WP_161502994.1 | DUF1311 domain-containing protein | - |
| EH203_RS20910 () | 4655645..4656742 | - | 1098 | WP_161503094.1 | acyl-CoA desaturase | - |
| EH203_RS20915 () | 4656742..4657869 | - | 1128 | WP_161502995.1 | acyl-CoA desaturase | - |
| EH203_RS20920 () | 4657862..4658986 | - | 1125 | WP_039474531.1 | sterol desaturase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|