MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 60549 bp
Accession: NZ_CP034179 Location: 1646385..1706933 Organism: Novosphingobium tardaugens NBRC 16725 Replicon: chromosome
Accession: NZ_CP034179 Location: 1646385..1706933 Organism: Novosphingobium tardaugens NBRC 16725 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGO55_RS07425 () | 1641492..1642781 | - | 1290 | WP_021691418.1 | AAA family ATPase | - |
| EGO55_RS07430 () | 1643487..1643948 | - | 462 | WP_021691417.1 | NUDIX domain-containing protein | - |
| EGO55_RS07435 () | 1643936..1644556 | - | 621 | WP_021691416.1 | 6-phosphogluconolactonase | - |
| EGO55_RS07440 () | 1644632..1645093 | - | 462 | WP_021691415.1 | DNA starvation/stationary phase protection protein | - |
| EGO55_RS07445 () | 1645187..1645750 | - | 564 | WP_021691414.1 | hypothetical protein | - |
| EGO55_RS07450 () | 1645821..1645910 | - | 90 | WP_179953050.1 | DUF4102 domain-containing protein | - |
| EGO55_RS07460 () | 1646628..1648157 | + | 1530 | WP_084620321.1 | UbiD family decarboxylase | - |
| EGO55_RS07465 () | 1648166..1649341 | - | 1176 | WP_021691411.1 | hypothetical protein | - |
| EGO55_RS20545 () | 1649647..1655847 | + | 6201 | WP_040717131.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| EGO55_RS07475 () | 1655837..1656055 | + | 219 | WP_084620319.1 | invasion associated locus B family protein | - |
| EGO55_RS07480 () | 1656413..1657297 | + | 885 | WP_052023786.1 | hypothetical protein | VF |
| EGO55_RS07485 () | 1657309..1657542 | - | 234 | WP_021691407.1 | DUF2274 domain-containing protein | - |
| EGO55_RS07490 () | 1657545..1658666 | - | 1122 | WP_084620346.1 | hypothetical protein | VF |
| EGO55_RS07495 () | 1658723..1659706 | - | 984 | WP_021691405.1 | P-type conjugative transfer protein TrbG | - |
| EGO55_RS07500 () | 1659703..1660392 | - | 690 | WP_021691404.1 | conjugal transfer protein TrbF | - |
| EGO55_RS07505 () | 1660392..1661750 | - | 1359 | WP_021691403.1 | P-type conjugative transfer protein TrbL | - |
| EGO55_RS07510 () | 1661754..1662062 | - | 309 | WP_021691402.1 | putative entry exclusion protein TrbK-alt | - |
| EGO55_RS07515 () | 1662084..1662854 | - | 771 | WP_021691401.1 | P-type conjugative transfer protein TrbJ | - |
| EGO55_RS07520 () | 1662857..1665295 | - | 2439 | WP_021691400.1 | conjugal transfer protein TrbE | - |
| EGO55_RS07525 () | 1665310..1665588 | - | 279 | WP_021691399.1 | VirB3 family type IV secretion system protein | - |
| EGO55_RS07530 () | 1665588..1665920 | - | 333 | WP_021691398.1 | TrbC/VirB2 family protein | - |
| EGO55_RS07535 () | 1665917..1666900 | - | 984 | WP_021691397.1 | hypothetical protein | VF |
| EGO55_RS07540 () | 1667089..1667517 | - | 429 | WP_021691396.1 | hypothetical protein | - |
| EGO55_RS07545 () | 1667523..1669508 | - | 1986 | WP_021691395.1 | hypothetical protein | VF |
| EGO55_RS07550 () | 1669533..1671272 | - | 1740 | WP_021691394.1 | VirD2 family relaxase/mobilization nuclease | - |
| EGO55_RS07555 () | 1671516..1672274 | - | 759 | WP_124916854.1 | hypothetical protein | VF |
| EGO55_RS07560 () | 1672299..1672631 | - | 333 | WP_021691392.1 | DUF736 domain-containing protein | - |
| EGO55_RS07565 () | 1672681..1673226 | - | 546 | WP_021691391.1 | S26 family signal peptidase | - |
| EGO55_RS07570 () | 1673223..1673744 | - | 522 | WP_021691390.1 | DUF2840 domain-containing protein | - |
| EGO55_RS07575 () | 1673741..1673992 | - | 252 | WP_021691389.1 | hypothetical protein | - |
| EGO55_RS07580 () | 1673989..1674645 | - | 657 | WP_021691388.1 | hypothetical protein | VF |
| EGO55_RS07585 () | 1674642..1675817 | - | 1176 | WP_021691387.1 | replication initiator protein A | - |
| EGO55_RS07590 () | 1675836..1676117 | - | 282 | WP_021691386.1 | helix-turn-helix domain-containing protein | - |
| EGO55_RS07595 () | 1676261..1676857 | - | 597 | WP_021691385.1 | DUF2285 domain-containing protein | - |
| EGO55_RS07605 () | 1677151..1677411 | - | 261 | WP_021691384.1 | DUF2285 domain-containing protein | - |
| EGO55_RS07610 () | 1677505..1677771 | - | 267 | WP_021691383.1 | helix-turn-helix transcriptional regulator | - |
| EGO55_RS20660 () | 1678015..1678179 | - | 165 | WP_169727749.1 | hypothetical protein | - |
| EGO55_RS07615 () | 1678637..1679038 | - | 402 | WP_021691381.1 | single-stranded DNA-binding protein | - |
| EGO55_RS07620 () | 1679864..1680280 | - | 417 | WP_021691380.1 | hypothetical protein | - |
| EGO55_RS07625 () | 1680501..1681415 | + | 915 | WP_124916750.1 | class D beta-lactamase | - |
| EGO55_RS07630 () | 1681469..1682356 | + | 888 | WP_201798928.1 | alpha/beta hydrolase | - |
| EGO55_RS07635 () | 1682655..1683107 | + | 453 | WP_021691377.1 | hypothetical protein | VF |
| EGO55_RS07640 () | 1683148..1683549 | + | 402 | WP_021691376.1 | hypothetical protein | - |
| EGO55_RS07645 () | 1683563..1684000 | + | 438 | WP_021691375.1 | hypothetical protein | - |
| EGO55_RS20740 () | 1684022..1684147 | + | 126 | WP_124916751.1 | carotenoid oxygenase family protein | - |
| EGO55_RS07655 () | 1684217..1684810 | + | 594 | WP_201798929.1 | hypothetical protein | - |
| EGO55_RS07660 () | 1685049..1686089 | - | 1041 | WP_021692041.1 | IS110 family transposase ISRsp4 | Transposase |
| EGO55_RS07665 () | 1686278..1686703 | - | 426 | WP_084620448.1 | rhodanese family protein | - |
| EGO55_RS07670 () | 1686807..1687547 | - | 741 | WP_021691864.1 | IS21 family transposase ISRel16 | Transposase |
| EGO55_RS07675 () | 1687559..1689084 | - | 1526 | Protein_1536 | IS21 family transposase ISRel16 | Transposase |
| EGO55_RS07680 () | 1689206..1689391 | - | 186 | WP_040717611.1 | rhodanese-like domain-containing protein | - |
| EGO55_RS07685 () | 1689409..1689714 | - | 306 | WP_021691867.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| EGO55_RS07690 () | 1689791..1690135 | + | 345 | WP_021691868.1 | carboxymuconolactone decarboxylase family protein | - |
| EGO55_RS07695 () | 1690153..1691082 | - | 930 | WP_021691869.1 | DUF2493 domain-containing protein | - |
| EGO55_RS07700 () | 1691412..1692473 | - | 1062 | WP_021691870.1 | toprim domain-containing protein | - |
| EGO55_RS07705 () | 1692473..1696801 | - | 4329 | WP_021691871.1 | strawberry notch family protein | - |
| EGO55_RS07710 () | 1696962..1697606 | - | 645 | WP_021691872.1 | hypothetical protein | - |
| EGO55_RS07715 () | 1697599..1698015 | - | 417 | WP_021691873.1 | hypothetical protein | - |
| EGO55_RS07720 () | 1698085..1698642 | - | 558 | WP_021691874.1 | hypothetical protein | - |
| EGO55_RS07725 () | 1698853..1701027 | - | 2175 | WP_021691875.1 | hypothetical protein | - |
| EGO55_RS07730 () | 1701193..1702140 | - | 948 | WP_021691876.1 | hypothetical protein | - |
| EGO55_RS07735 () | 1702140..1703090 | - | 951 | WP_021691877.1 | DUF1738 domain-containing protein | - |
| EGO55_RS07740 () | 1703166..1703987 | - | 822 | WP_021691878.1 | hypothetical protein | - |
| EGO55_RS07745 () | 1703995..1704498 | - | 504 | WP_021691879.1 | GNAT family N-acetyltransferase | Toxin Detail |
| EGO55_RS07750 () | 1704503..1704802 | - | 300 | WP_021691880.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| EGO55_RS07755 () | 1705071..1705295 | + | 225 | WP_021691881.1 | hypothetical protein | - |
| EGO55_RS07760 () | 1705315..1706967 | + | 1653 | WP_124916855.1 | recombinase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|