MGE detailed information
MGE type: Prophage MGE length: 25400 bp
Accession: NZ_CP034067 Location: 4471183..4496582 Organism: Shigella sonnei strain FDAARGOS_524 Replicon: chromosome
Accession: NZ_CP034067 Location: 4471183..4496582 Organism: Shigella sonnei strain FDAARGOS_524 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX92_RS23280 () | 4466933..4467996 | + | 1064 | Protein_4364 | MFS transporter | - |
| EGX92_RS23285 () | 4468042..4468923 | - | 882 | WP_000984517.1 | protease HtpX | - |
| EGX92_RS23290 () | 4469115..4471163 | - | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
| EGX92_RS23295 () | 4471183..4471881 | - | 699 | WP_000431362.1 | RNA chaperone ProQ | - |
| EGX92_RS23300 () | 4471978..4472475 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| EGX92_RS23305 () | 4472605..4473888 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| EGX92_RS23310 () | 4473857..4476490 | + | 2634 | WP_005138565.1 | hypothetical protein | VF |
| EGX92_RS23315 () | 4476571..4478010 | + | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EGX92_RS26055 () | 4478128..4478211 | + | 84 | Protein_4372 | DUF1480 family protein | - |
| EGX92_RS23325 () | 4478983..4479141 | + | 159 | Protein_4374 | DUF1480 family protein | - |
| EGX92_RS23330 () | 4479246..4479437 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EGX92_RS23335 () | 4479438..4479638 | - | 201 | Protein_4376 | serine/threonine-protein phosphatase | - |
| EGX92_RS23345 () | 4480894..4481199 | - | 306 | Protein_4378 | serine/threonine-protein phosphatase | - |
| EGX92_RS23350 () | 4481254..4481951 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| EGX92_RS23355 () | 4481965..4482138 | - | 174 | Protein_4380 | metallophosphoesterase | - |
| EGX92_RS23365 () | 4482789..4483945 | + | 1157 | WP_085948186.1 | IS3 family transposase ISSd1 | Transposase |
| EGX92_RS23370 () | 4484147..4485862 | + | 1716 | WP_011310192.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| EGX92_RS23385 () | 4487279..4487539 | + | 261 | WP_077447296.1 | excisionase | - |
| EGX92_RS23390 () | 4487568..4488022 | + | 455 | Protein_4385 | IS1-like element IS1A family transposase | - |
| EGX92_RS23395 () | 4488117..4489345 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| EGX92_RS23400 () | 4489356..4489601 | + | 246 | Protein_4387 | IS1 family transposase IS1R | Transposase |
| EGX92_RS23405 () | 4489638..4490714 | + | 1077 | WP_001189101.1 | hypothetical protein ; Integrase | Integrase |
| - | 4490845..4491079 | + | 235 | - | - | Antitoxin Detail |
| - | 4490846..4490949 | - | 104 | - | - | Toxin Detail |
| EGX92_RS23410 () | 4491107..4491448 | - | 342 | WP_000976476.1 | YebY family protein | - |
| EGX92_RS23415 () | 4491461..4492333 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| EGX92_RS23420 () | 4492337..4492711 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| EGX92_RS23425 () | 4492850..4493080 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EGX92_RS23430 () | 4493183..4493839 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EGX92_RS23435 () | 4493863..4494525 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EGX92_RS23440 () | 4494522..4496582 | - | 2061 | WP_000936913.1 | oligopeptidase B | - |
| EGX92_RS23445 () | 4496791..4497450 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| EGX92_RS23450 () | 4497777..4498133 | - | 357 | WP_001295500.1 | protein YebF | - |
| EGX92_RS23455 () | 4498200..4498490 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| EGX92_RS23460 () | 4498624..4499802 | + | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| EGX92_RS23465 () | 4499858..4500499 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|