MGE detailed information
MGE type: Mobilizable plasmid MGE length: 57818 bp
Accession: NZ_CP034061 Location: 1..57818 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: plasmid unnamed2
Accession: NZ_CP034061 Location: 1..57818 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX88_RS24940 (EGX88_24955) | 102..1226 | + | 1125 | WP_000486716.1 | site-specific integrase | - |
| EGX88_RS24945 (EGX88_24960) | 1238..1891 | + | 654 | WP_000572553.1 | hypothetical protein | - |
| EGX88_RS24950 (EGX88_24965) | 1921..2453 | + | 533 | Protein_2 | thermonuclease family protein | - |
| EGX88_RS24955 (EGX88_24970) | 2548..4224 | + | 1677 | WP_000289347.1 | PcfJ domain-containing protein | - |
| EGX88_RS24960 (EGX88_24975) | 4394..4969 | + | 576 | WP_001303470.1 | hypothetical protein | - |
| EGX88_RS24965 (EGX88_24980) | 4974..7130 | + | 2157 | WP_000765172.1 | type IA DNA topoisomerase | - |
| EGX88_RS25825 | 7605..7943 | + | 339 | WP_021575835.1 | hypothetical protein | - |
| EGX88_RS24980 (EGX88_24995) | 8062..8268 | + | 207 | WP_000850854.1 | hemolysin expression modulator Hha | - |
| EGX88_RS24985 (EGX88_25000) | 8498..8860 | + | 363 | WP_252997060.1 | hypothetical protein | - |
| EGX88_RS25830 | 8874..9314 | + | 441 | WP_000666089.1 | hypothetical protein | - |
| EGX88_RS24990 (EGX88_25005) | 9357..13652 | - | 4296 | WP_023223353.1 | hypothetical protein | - |
| EGX88_RS24995 (EGX88_25010) | 13649..13990 | - | 342 | WP_000730722.1 | hypothetical protein | Relaxase |
| EGX88_RS25000 (EGX88_25015) | 14359..14760 | + | 402 | WP_021575837.1 | hypothetical protein | - |
| EGX88_RS25005 (EGX88_25020) | 14778..15530 | + | 753 | WP_000797966.1 | conjugal transfer protein TraL | - |
| EGX88_RS25010 (EGX88_25025) | 15532..16239 | + | 708 | WP_000108794.1 | hypothetical protein | - |
| EGX88_RS26425 | 16259..16381 | + | 123 | Protein_15 | hypothetical protein | - |
| EGX88_RS25015 (EGX88_25030) | 16376..16699 | + | 324 | WP_223666488.1 | hypothetical protein | - |
| EGX88_RS25020 (EGX88_25035) | 16701..17027 | + | 327 | WP_000206697.1 | hypothetical protein | - |
| EGX88_RS25025 (EGX88_25040) | 17287..17586 | - | 300 | WP_000466320.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| EGX88_RS26430 | 17827..18270 | + | 444 | WP_023223351.1 | hypothetical protein | - |
| EGX88_RS25035 (EGX88_25050) | 18358..18705 | - | 348 | WP_000681609.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| EGX88_RS25040 (EGX88_25055) | 18702..18950 | - | 249 | WP_000513532.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| EGX88_RS25045 (EGX88_25060) | 19415..19693 | - | 279 | WP_000545937.1 | hypothetical protein | - |
| EGX88_RS25060 (EGX88_25075) | 20242..20493 | - | 252 | WP_001132407.1 | transcriptional regulator | Antitoxin Detail |
| EGX88_RS25065 (EGX88_25080) | 20483..20743 | - | 261 | WP_000702246.1 | hypothetical protein | Toxin Detail |
| EGX88_RS25070 (EGX88_25085) | 20795..21019 | - | 225 | WP_000814384.1 | hypothetical protein | - |
| EGX88_RS25075 (EGX88_25090) | 21117..21326 | - | 210 | WP_000866037.1 | hypothetical protein | - |
| EGX88_RS25080 (EGX88_25095) | 21367..21690 | - | 324 | WP_000427402.1 | hypothetical protein | - |
| EGX88_RS25085 (EGX88_25105) | 22269..22598 | - | 330 | WP_000855121.1 | hypothetical protein | - |
| EGX88_RS25095 (EGX88_25115) | 23196..23861 | + | 666 | WP_000532148.1 | division plane positioning ATPase MipZ | - |
| EGX88_RS26435 | 23935..24219 | + | 285 | WP_001162371.1 | hypothetical protein | - |
| EGX88_RS25105 (EGX88_25125) | 24237..24833 | - | 597 | WP_000125164.1 | ProQ/FINO family protein | - |
| EGX88_RS25110 (EGX88_25130) | 24983..25102 | - | 120 | WP_227525580.1 | Hok/Gef family protein | - |
| EGX88_RS26440 | 25050..25202 | - | 153 | Protein_33 | FlmC family protein | - |
| EGX88_RS25125 (EGX88_25145) | 26548..27576 | - | 1029 | WP_001175215.1 | plasmid replication initiator RepA | - |
| EGX88_RS25130 (EGX88_25150) | 28708..29160 | + | 453 | WP_000101552.1 | CaiF/GrlA family transcriptional regulator | - |
| EGX88_RS25135 (EGX88_25155) | 29153..29368 | + | 216 | WP_001127357.1 | DUF1187 family protein | - |
| EGX88_RS25835 | 29361..29537 | + | 177 | WP_000753049.1 | hypothetical protein | - |
| EGX88_RS25140 (EGX88_25160) | 29564..30517 | + | 954 | WP_072089442.1 | SPFH domain-containing protein | - |
| EGX88_RS25150 (EGX88_25170) | 30891..31334 | + | 444 | WP_000964330.1 | NfeD family protein | - |
| EGX88_RS25840 | 31338..31508 | + | 171 | WP_000550720.1 | hypothetical protein | - |
| EGX88_RS25155 (EGX88_25175) | 31519..31980 | + | 462 | WP_001243166.1 | hypothetical protein | - |
| EGX88_RS25170 (EGX88_25190) | 32395..32697 | + | 303 | WP_084567655.1 | hypothetical protein | - |
| EGX88_RS25175 (EGX88_25195) | 32694..32951 | + | 258 | WP_000739144.1 | hypothetical protein | - |
| EGX88_RS25180 (EGX88_25200) | 32955..33950 | + | 996 | WP_001028543.1 | type IV secretion system protein | - |
| EGX88_RS25185 (EGX88_25205) | 33956..34597 | + | 642 | WP_001425343.1 | hypothetical protein | VF |
| EGX88_RS25190 (EGX88_25210) | 34599..34853 | + | 255 | WP_001043555.1 | EexN family lipoprotein | - |
| EGX88_RS25195 (EGX88_25215) | 34866..35153 | + | 288 | WP_001032611.1 | EexN family lipoprotein | - |
| EGX88_RS25200 (EGX88_25220) | 35226..35861 | + | 636 | WP_000835773.1 | hypothetical protein | - |
| EGX88_RS25205 (EGX88_25225) | 36033..36320 | + | 288 | WP_001326593.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| EGX88_RS25210 (EGX88_25230) | 36323..37558 | + | 1236 | WP_000733400.1 | hypothetical protein | VF |
| EGX88_RS25215 (EGX88_25235) | 37564..38001 | + | 438 | WP_000539666.1 | type IV pilus biogenesis protein PilM | - |
| EGX88_RS25220 (EGX88_25240) | 38341..38739 | + | 399 | WP_001153669.1 | hypothetical protein | - |
| EGX88_RS25225 (EGX88_25245) | 38760..39344 | + | 585 | WP_023223347.1 | Type IV secretion system protein virB1 | VF |
| EGX88_RS25850 | 39344..39634 | + | 291 | WP_000865478.1 | hypothetical protein | - |
| EGX88_RS25235 (EGX88_25255) | 39705..40025 | + | 321 | WP_010895893.1 | VirB3 family type IV secretion system protein | - |
| EGX88_RS25240 (EGX88_25260) | 40031..42388 | + | 2358 | WP_023223346.1 | VirB4 family type IV secretion system protein | - |
| EGX88_RS25250 (EGX88_25270) | 42554..43288 | + | 735 | WP_000432283.1 | Type IV secretion system protein virB8 | VF |
| EGX88_RS25255 (EGX88_25275) | 43285..44055 | + | 771 | WP_000979242.1 | Type IV secretion system protein PtlF | VF |
| EGX88_RS25260 (EGX88_25280) | 44045..45184 | + | 1140 | WP_000790641.1 | Type IV secretion system protein virB10 | VF |
| EGX88_RS25265 (EGX88_25285) | 45251..46306 | + | 1056 | WP_001059977.1 | Type IV secretion system protein VirB11 | VF |
| EGX88_RS25270 (EGX88_25290) | 46322..48280 | + | 1959 | WP_134797162.1 | type IV secretory system conjugative DNA transfer family protein | - |
| EGX88_RS25275 (EGX88_25295) | 48327..48845 | + | 519 | WP_010895890.1 | sigma 54-interacting transcriptional regulator | - |
| EGX88_RS25280 (EGX88_25300) | 48838..50481 | + | 1644 | WP_001035589.1 | Outer membrane lipoprotein BfpB | VF |
| EGX88_RS25285 (EGX88_25305) | 50532..51842 | + | 1311 | WP_001454111.1 | type 4b pilus protein PilO2 | - |
| EGX88_RS25290 (EGX88_25310) | 51826..52320 | + | 495 | WP_000912553.1 | hypothetical protein | VF |
| EGX88_RS25295 (EGX88_25315) | 52345..53883 | + | 1539 | WP_000466225.1 | Type II secretion system protein E | VF |
| EGX88_RS25300 (EGX88_25320) | 53874..54983 | + | 1110 | WP_000974903.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| EGX88_RS25305 (EGX88_25325) | 55028..55585 | + | 558 | WP_000095048.1 | type 4 pilus major pilin | - |
| EGX88_RS25310 (EGX88_25330) | 55651..56133 | + | 483 | WP_001258095.1 | hypothetical protein | VF |
| EGX88_RS25315 (EGX88_25335) | 56137..56772 | + | 636 | WP_000934979.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| EGX88_RS25320 (EGX88_25340) | 56785..57818 | + | 1034 | WP_000750512.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|