MGE detailed information
MGE type: Prophage MGE length: 99527 bp
Accession: NZ_CP034060 Location: 3470857..3570383 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Accession: NZ_CP034060 Location: 3470857..3570383 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX88_RS19275 (3467167) | 3467167..3467844 | - | 678 | WP_000044868.1 | dethiobiotin synthase | - |
| EGX88_RS19280 (3467837) | 3467837..3468592 | - | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| EGX88_RS19285 (3468579) | 3468579..3469733 | - | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| EGX88_RS19290 (3469730) | 3469730..3470770 | - | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| EGX88_RS19295 (3470857) | 3470857..3472146 | + | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| EGX88_RS19300 (3472205) | 3472205..3472681 | + | 477 | WP_000767391.1 | kinase inhibitor | - |
| EGX88_RS19305 (3472996) | 3472996..3473076 | + | 81 | Protein_3412 | hypothetical protein | - |
| EGX88_RS19310 (3473086) | 3473086..3473172 | - | 87 | Protein_3413 | transposase | - |
| EGX88_RS19315 (3473264) | 3473264..3475027 | + | 1764 | WP_134797143.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| EGX88_RS26310 (3475097) | 3475097..3475201 | - | 105 | Protein_3415 | tail fiber assembly protein | - |
| EGX88_RS19325 (3475207) | 3475207..3475830 | - | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| EGX88_RS26315 (3475781) | 3475781..3476617 | - | 837 | Protein_3417 | phage tail protein | - |
| EGX88_RS26320 (3476593) | 3476593..3477195 | - | 603 | WP_236743631.1 | prophage tail fiber N-terminal domain-containing protein | - |
| EGX88_RS19335 (3477259) | 3477259..3477858 | - | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| EGX88_RS19340 (3477926) | 3477926..3481406 | - | 3481 | Protein_3420 | host specificity protein J | - |
| EGX88_RS19345 (3481467) | 3481467..3482042 | - | 576 | WP_005105520.1 | tail assembly protein | - |
| EGX88_RS19350 (3482006) | 3482006..3482749 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| EGX88_RS19355 (3482754) | 3482754..3483452 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| EGX88_RS19360 (3483452) | 3483452..3483781 | - | 330 | WP_000447264.1 | phage tail protein | - |
| EGX88_RS25765 (3483781) | 3483781..3486517 | - | 2737 | Protein_3425 | phage tail tape measure protein | - |
| EGX88_RS19385 (3486489) | 3486489..3486818 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| EGX88_RS19390 (3486827) | 3486827..3487213 | - | 387 | Protein_3427 | phage minor tail protein G | - |
| EGX88_RS19395 (3487271) | 3487271..3488011 | - | 741 | WP_000211126.1 | phage tail tube protein | - |
| EGX88_RS19400 (3488022) | 3488022..3488423 | - | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| EGX88_RS19405 (3488420) | 3488420..3489004 | - | 585 | WP_000677140.1 | phage tail protein | - |
| EGX88_RS19410 (3488991) | 3488991..3489368 | - | 378 | WP_000348593.1 | head-tail joining protein | - |
| EGX88_RS19415 (3489380) | 3489380..3489766 | - | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| EGX88_RS19420 (3489818) | 3489818..3490846 | - | 1029 | WP_134797144.1 | major capsid protein | - |
| EGX88_RS19425 (3490904) | 3490904..3491251 | - | 348 | WP_000256830.1 | head decoration protein | - |
| EGX88_RS19430 (3491288) | 3491288..3492793 | - | 1506 | WP_001254016.1 | S49 family peptidase | - |
| EGX88_RS19435 (3492783) | 3492783..3494376 | - | 1594 | Protein_3436 | phage portal protein | - |
| EGX88_RS19440 (3494373) | 3494373..3494576 | - | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| EGX88_RS19445 (3494560) | 3494560..3496488 | - | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| EGX88_RS19450 (3496460) | 3496460..3496768 | - | 309 | Protein_3439 | terminase small subunit | - |
| EGX88_RS19455 (3496811) | 3496811..3497850 | - | 1040 | Protein_3440 | IS3 family transposase IS600 | Transposase |
| EGX88_RS19460 (3497906) | 3497906..3499115 | + | 1210 | Protein_3441 | IS3 family transposase IS629 | Transposase |
| EGX88_RS19465 (3499167) | 3499167..3500173 | + | 1007 | Protein_3442 | IS3 family transposase ISSfl10 | Transposase |
| EGX88_RS19470 (3500217) | 3500217..3500396 | - | 180 | Protein_3443 | Rha family transcriptional regulator | - |
| EGX88_RS25770 (3500599) | 3500599..3501066 | - | 468 | WP_000092287.1 | lysis protein | - |
| EGX88_RS19480 (3501063) | 3501063..3501596 | - | 534 | WP_001274722.1 | lysozyme | - |
| EGX88_RS19485 (3501662) | 3501662..3502291 | - | 630 | WP_005094817.1 | hypothetical protein | - |
| EGX88_RS19490 (3502295) | 3502295..3502510 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| EGX88_RS19515 (3503313) | 3503313..3503693 | - | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| EGX88_RS19520 (3503686) | 3503686..3503886 | - | 201 | WP_000111769.1 | protein ninH | - |
| EGX88_RS19525 (3503981) | 3503981..3504238 | - | 258 | WP_001064799.1 | hypothetical protein | - |
| EGX88_RS19530 (3504235) | 3504235..3505626 | - | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| EGX88_RS19535 (3505623) | 3505623..3506501 | - | 879 | WP_000988183.1 | ATP-binding protein | - |
| EGX88_RS19540 (3506512) | 3506512..3507420 | - | 909 | WP_001247840.1 | hypothetical protein | - |
| EGX88_RS19545 (3507407) | 3507407..3507640 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| EGX88_RS26325 (3507637) | 3507637..3508089 | - | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| EGX88_RS26330 (3508147) | 3508147..3508605 | - | 459 | WP_000961311.1 | ash family protein | - |
| EGX88_RS19555 (3508618) | 3508618..3508848 | + | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EGX88_RS19560 (3508838) | 3508838..3509146 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| EGX88_RS19565 (3509188) | 3509188..3509364 | - | 177 | WP_001252556.1 | NinE family protein | - |
| EGX88_RS19570 (3509361) | 3509361..3509771 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| EGX88_RS19575 (3509768) | 3509768..3510046 | - | 279 | WP_005061104.1 | hypothetical protein | - |
| EGX88_RS19580 (3510121) | 3510121..3510315 | - | 195 | Protein_3462 | hypothetical protein | - |
| EGX88_RS19585 (3510385) | 3510385..3511553 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| EGX88_RS19595 (3511683) | 3511683..3512812 | + | 1130 | WP_112361761.1 | IS3 family transposase ISSfl10 | Transposase |
| EGX88_RS19600 (3512859) | 3512859..3512945 | - | 87 | Protein_3465 | class II holin family protein | - |
| EGX88_RS19630 (3514125) | 3514125..3514565 | - | 441 | Protein_3466 | DUF1133 family protein | - |
| EGX88_RS19640 (3515915) | 3515915..3516580 | - | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| EGX88_RS19645 (3516749) | 3516749..3517105 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| EGX88_RS19650 (3517163) | 3517163..3517585 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| EGX88_RS19655 (3517600) | 3517600..3518346 | - | 747 | Protein_3471 | ATP-binding protein | - |
| EGX88_RS19660 (3518492) | 3518492..3519136 | - | 645 | WP_005061591.1 | hypothetical protein | - |
| EGX88_RS19665 (3519214) | 3519214..3519636 | - | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| EGX88_RS19670 (3519620) | 3519620..3519847 | - | 228 | WP_000912291.1 | Cro/CI family transcriptional regulator | - |
| EGX88_RS19675 (3519924) | 3519924..3520331 | + | 408 | WP_000787424.1 | helix-turn-helix domain-containing protein | - |
| EGX88_RS19680 (3520534) | 3520534..3520689 | + | 156 | WP_001091985.1 | DUF1391 family protein | - |
| EGX88_RS19685 (3520691) | 3520691..3520894 | + | 204 | WP_001005968.1 | hypothetical protein | - |
| EGX88_RS19700 (3522912) | 3522912..3523760 | + | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| EGX88_RS19705 (3523777) | 3523777..3524058 | + | 282 | WP_001069001.1 | YdaE family protein | - |
| EGX88_RS26335 (3524094) | 3524094..3524210 | + | 117 | Protein_3481 | hypothetical protein | - |
| EGX88_RS19710 (3524274) | 3524274..3525403 | + | 1130 | WP_130862224.1 | IS3 family transposase ISSfl10 | Transposase |
| EGX88_RS19715 (3525446) | 3525446..3525874 | - | 429 | Protein_3483 | exonuclease VIII | - |
| EGX88_RS19720 (3525952) | 3525952..3527120 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| EGX88_RS19725 (3527130) | 3527130..3527324 | - | 195 | Protein_3485 | hypothetical protein | - |
| EGX88_RS19730 (3527424) | 3527424..3527656 | - | 233 | Protein_3486 | hypothetical protein | - |
| EGX88_RS19740 (3528889) | 3528889..3529506 | + | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| EGX88_RS26340 (3529512) | 3529512..3529616 | + | 105 | Protein_3489 | tail fiber assembly protein | - |
| EGX88_RS25520 (3529686) | 3529686..3531511 | - | 1826 | Protein_3490 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| EGX88_RS19760 (3532002) | 3532002..3532091 | + | 90 | Protein_3491 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| EGX88_RS19765 (3532393) | 3532393..3533388 | + | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| EGX88_RS19770 (3533429) | 3533429..3534382 | - | 954 | Protein_3493 | LysR family transcriptional regulator | - |
| EGX88_RS19775 (3534566) | 3534566..3535618 | + | 1053 | WP_000723619.1 | 4-oxalomesaconate tautomerase | - |
| EGX88_RS19780 (3535694) | 3535694..3537127 | + | 1434 | WP_001036462.1 | anion permease | - |
| EGX88_RS19785 (3537310) | 3537310..3539490 | + | 2181 | WP_000593952.1 | hydratase | - |
| EGX88_RS19790 (3539631) | 3539631..3540914 | - | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| EGX88_RS19795 (3541049) | 3541049..3541990 | - | 942 | Protein_3498 | tyrosine-type recombinase/integrase | - |
| EGX88_RS19805 (3543225) | 3543225..3543353 | + | 129 | Protein_3500 | class II holin family protein | - |
| EGX88_RS19810 (3543353) | 3543353..3543646 | + | 294 | Protein_3501 | glycoside hydrolase family protein | - |
| EGX88_RS19815 (3543729) | 3543729..3544403 | + | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS19820 (3544400) | 3544400..3544750 | + | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS19825 (3544747) | 3544747..3545414 | + | 668 | Protein_3504 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS19835 (3545478) | 3545478..3546634 | + | 1157 | WP_134797145.1 | IS3 family transposase IS600 | Transposase |
| EGX88_RS19840 (3546676) | 3546676..3547083 | + | 408 | Protein_3506 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS19845 (3547154) | 3547154..3548322 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| EGX88_RS19850 (3548328) | 3548328..3548576 | + | 249 | Protein_3508 | lysis protein | - |
| EGX88_RS19855 (3548665) | 3548665..3549177 | - | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| EGX88_RS19860 (3549372) | 3549372..3550067 | + | 696 | WP_001108105.1 | hypothetical protein | - |
| EGX88_RS26345 (3551314) | 3551314..3551388 | + | 75 | Protein_3512 | hypothetical protein | - |
| EGX88_RS19870 (3551399) | 3551399..3552007 | + | 609 | Protein_3513 | PBSX family phage terminase large subunit | - |
| EGX88_RS19875 (3552098) | 3552098..3553325 | + | 1228 | WP_167550001.1 | IS3 family transposase IS2 | Transposase |
| EGX88_RS19880 (3553337) | 3553337..3554070 | + | 734 | Protein_3515 | PBSX family phage terminase large subunit | - |
| EGX88_RS19885 (3554070) | 3554070..3555536 | + | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| EGX88_RS19890 (3555427) | 3555427..3556170 | + | 744 | WP_000184977.1 | phage minor head protein | - |
| EGX88_RS19895 (3556174) | 3556174..3557394 | + | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| EGX88_RS19900 (3557398) | 3557398..3557887 | + | 490 | Protein_3519 | hypothetical protein | - |
| EGX88_RS19905 (3557899) | 3557899..3558840 | + | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| EGX88_RS25780 (3558837) | 3558837..3559112 | - | 276 | WP_011069283.1 | hypothetical protein | - |
| EGX88_RS19920 (3560345) | 3560345..3561976 | - | 1632 | Protein_3523 | Mu transposase C-terminal domain-containing protein | - |
| EGX88_RS19925 (3561951) | 3561951..3562187 | - | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| EGX88_RS19930 (3562359) | 3562359..3562868 | + | 510 | WP_000833599.1 | DNA-binding protein | - |
| EGX88_RS19935 (3563206) | 3563206..3563547 | + | 342 | Protein_3526 | response regulator | - |
| EGX88_RS19940 (3563588) | 3563588..3564973 | - | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| EGX88_RS19945 (3565561) | 3565561..3566121 | + | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| EGX88_RS19950 (3566296) | 3566296..3566505 | + | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| EGX88_RS19955 (3566559) | 3566559..3566942 | - | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| EGX88_RS19960 (3567035) | 3567035..3567823 | + | 789 | WP_005049482.1 | deaminated glutathione amidase | - |
| EGX88_RS19965 (3567952) | 3567952..3568155 | + | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| EGX88_RS19970 (3568256) | 3568256..3569221 | - | 966 | WP_000042632.1 | lipoyl synthase | - |
| EGX88_RS19975 (3569430) | 3569430..3570383 | - | 954 | WP_000378035.1 | YbeF family transcriptional regulator | - |
| EGX88_RS19980 (3570642) | 3570642..3571283 | - | 642 | WP_000284045.1 | lipoyl(octanoyl) transferase LipB | - |
| EGX88_RS19985 (3571384) | 3571384..3571647 | - | 264 | WP_000850550.1 | DUF493 family protein YbeD | - |
| EGX88_RS19990 (3571758) | 3571758..3572969 | - | 1212 | WP_001092085.1 | D-alanyl-D-alanine carboxypeptidase DacA | - |
| EGX88_RS19995 (3573108) | 3573108..3574196 | - | 1089 | WP_001231406.1 | endolytic peptidoglycan transglycosylase RlpA | - |
| EGX88_RS20000 (3574207) | 3574207..3575319 | - | 1113 | WP_000131719.1 | peptidoglycan glycosyltransferase MrdB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|