MGE detailed information
MGE type: Prophage MGE length: 55668 bp
Accession: NZ_CP034060 Location: 2712335..2768002 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Accession: NZ_CP034060 Location: 2712335..2768002 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX88_RS15215 () | 2708883..2709854 | + | 972 | WP_000150544.1 | PTS mannose transporter subunit IIAB | - |
| EGX88_RS15220 () | 2709917..2710717 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| EGX88_RS15225 () | 2710730..2711581 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| EGX88_RS15230 () | 2711636..2712112 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| EGX88_RS15235 () | 2712141..2712838 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| EGX88_RS15240 () | 2713301..2713867 | + | 567 | WP_005062712.1 | manganese efflux pump MntP | - |
| EGX88_RS15245 () | 2713864..2714673 | - | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| EGX88_RS15250 () | 2714839..2715048 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| EGX88_RS15255 () | 2715061..2715204 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| EGX88_RS15260 () | 2715783..2716070 | - | 288 | WP_001006860.1 | YebO family protein | - |
| EGX88_RS15265 () | 2716145..2716288 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| EGX88_RS15270 () | 2716447..2716686 | + | 240 | WP_001211010.1 | YobH family protein | - |
| EGX88_RS15275 () | 2716829..2717620 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| EGX88_RS15280 () | 2717797..2719170 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| EGX88_RS15285 () | 2719216..2720097 | - | 882 | WP_000984517.1 | protease HtpX | - |
| EGX88_RS15290 () | 2720289..2722337 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| EGX88_RS15295 () | 2722357..2723055 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| EGX88_RS15300 () | 2723152..2723649 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| EGX88_RS15305 () | 2723779..2725062 | + | 1284 | WP_001207281.1 | membrane integrity lipid transport subunit YebS | - |
| EGX88_RS15310 () | 2725031..2727651 | + | 2621 | Protein_2639 | hypothetical protein | VF |
| EGX88_RS15315 () | 2727731..2729170 | + | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EGX88_RS15320 () | 2729288..2729524 | + | 237 | WP_001295499.1 | YebV family protein | - |
| EGX88_RS15325 () | 2729629..2729820 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EGX88_RS15330 () | 2729845..2730033 | - | 189 | Protein_2643 | serine/threonine-protein phosphatase | - |
| EGX88_RS15340 () | 2731298..2731744 | - | 447 | Protein_2645 | metallophosphoesterase | - |
| EGX88_RS15350 () | 2732486..2734201 | + | 1716 | WP_128637710.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| EGX88_RS15360 () | 2734381..2735004 | - | 624 | Protein_2647 | DUF4376 domain-containing protein | - |
| EGX88_RS25725 () | 2734955..2735122 | - | 168 | Protein_2648 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS25730 () | 2735124..2735504 | - | 381 | Protein_2649 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS15370 () | 2736014..2736250 | - | 237 | WP_001275006.1 | hypothetical protein | - |
| EGX88_RS15375 () | 2736727..2737615 | + | 889 | Protein_2651 | Rha family transcriptional regulator | - |
| EGX88_RS15380 () | 2737657..2738885 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| EGX88_RS15385 () | 2738962..2739183 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| EGX88_RS15390 () | 2739183..2739353 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| EGX88_RS15395 () | 2739428..2739703 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| EGX88_RS15400 () | 2739803..2741218 | + | 1416 | Protein_2656 | exodeoxyribonuclease VIII | - |
| EGX88_RS15410 () | 2742530..2742838 | + | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| EGX88_RS15415 () | 2742819..2743987 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| EGX88_RS15420 () | 2744097..2744336 | + | 240 | WP_000932577.1 | hypothetical protein | - |
| EGX88_RS15425 () | 2744411..2745620 | + | 1210 | Protein_2661 | IS3 family transposase IS629 | Transposase |
| EGX88_RS15430 () | 2745668..2745835 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| EGX88_RS15435 () | 2745837..2746007 | + | 171 | Protein_2663 | DUF3596 domain-containing protein | - |
| EGX88_RS15445 () | 2746775..2747416 | + | 642 | Protein_2665 | Putative defective protein IntQ ; Integrase | Integrase |
| EGX88_RS15450 () | 2747889..2748803 | + | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| EGX88_RS15455 () | 2748803..2749630 | + | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| EGX88_RS15460 () | 2749627..2750484 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| EGX88_RS15465 () | 2750481..2751338 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| EGX88_RS15470 () | 2751539..2752162 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| EGX88_RS15475 () | 2752113..2753302 | - | 1190 | Protein_2671 | prophage tail fiber N-terminal domain-containing protein | - |
| EGX88_RS15480 () | 2753326..2753870 | - | 545 | Protein_2672 | tail fiber assembly protein | - |
| EGX88_RS15490 () | 2753894..2754262 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| EGX88_RS15500 () | 2755508..2755681 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| EGX88_RS15505 () | 2755834..2756388 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| EGX88_RS15510 () | 2756385..2756675 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| EGX88_RS15515 () | 2756675..2757274 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| EGX88_RS15520 () | 2757408..2758105 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| EGX88_RS15530 () | 2758611..2758766 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2758778..2758836 | + | 59 | - | - | Antitoxin Detail |
| EGX88_RS15535 () | 2759221..2759586 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| EGX88_RS15540 () | 2759586..2760251 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| EGX88_RS15545 () | 2760248..2760613 | - | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| EGX88_RS15550 () | 2760615..2760833 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| EGX88_RS15555 () | 2760926..2761282 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| EGX88_RS15560 () | 2761340..2761762 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| EGX88_RS15565 () | 2761777..2762520 | - | 744 | WP_000788999.1 | ATP-binding protein | - |
| EGX88_RS26200 () | 2762666..2762835 | - | 170 | Protein_2688 | hypothetical protein | - |
| EGX88_RS15575 () | 2763359..2764536 | + | 1178 | WP_171768840.1 | IS3 family transposase IS2 | Transposase |
| EGX88_RS15580 () | 2764593..2765761 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| EGX88_RS15585 () | 2765853..2766263 | - | 411 | Protein_2691 | YdaU family protein | - |
| EGX88_RS15590 () | 2766367..2767523 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| EGX88_RS15595 () | 2767568..2768002 | - | 435 | Protein_2693 | HTH-type transcriptional regulator PgrR | VF |
| EGX88_RS15600 () | 2768140..2769060 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| EGX88_RS15610 () | 2769060..2769995 | + | 936 | Protein_2695 | alpha/beta hydrolase | - |
| EGX88_RS15615 () | 2770013..2770651 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| EGX88_RS15620 () | 2770942..2771671 | + | 730 | Protein_2697 | murein tripeptide amidase MpaA | - |
| EGX88_RS15625 () | 2771646..2772605 | - | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|