MGE detailed information
MGE type: Prophage MGE length: 74682 bp
Accession: NZ_CP034060 Location: 2070175..2144856 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Accession: NZ_CP034060 Location: 2070175..2144856 Organism: Shigella flexneri strain FDAARGOS_535 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX88_RS11605 () | 2065929..2066999 | - | 1071 | WP_000108918.1 | histidinol-phosphate transaminase | - |
| EGX88_RS11610 () | 2066996..2068300 | - | 1305 | WP_000009597.1 | histidinol dehydrogenase | - |
| EGX88_RS11615 () | 2068306..2069205 | - | 900 | WP_000131772.1 | ATP phosphoribosyltransferase | - |
| EGX88_RS11630 () | 2069675..2069947 | + | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| EGX88_RS11635 () | 2069981..2070678 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| EGX88_RS11640 () | 2070700..2070954 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| EGX88_RS11645 () | 2071037..2071861 | + | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| EGX88_RS11650 () | 2071907..2072890 | + | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| EGX88_RS11655 () | 2073051..2073113 | + | 63 | WP_097433929.1 | membrane protein YoeI | - |
| EGX88_RS11660 () | 2073103..2074461 | + | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| EGX88_RS11665 () | 2074640..2075698 | + | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| EGX88_RS11670 () | 2075712..2075939 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| EGX88_RS11675 () | 2075982..2077406 | - | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| EGX88_RS11680 () | 2077588..2078424 | + | 837 | Protein_1955 | Prophage integrase IntA ; Integrase | Integrase |
| EGX88_RS11685 () | 2078506..2079180 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11690 () | 2079177..2079527 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11695 () | 2079524..2080429 | + | 906 | Protein_1958 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11700 () | 2080519..2081747 | + | 1229 | WP_171763412.1 | IS3 family transposase IS2 | Transposase |
| EGX88_RS11705 () | 2081760..2082047 | + | 288 | Protein_1960 | transposase | - |
| EGX88_RS11710 () | 2082112..2083268 | + | 1157 | WP_128599137.1 | IS3 family transposase IS600 | Transposase |
| EGX88_RS11720 () | 2083331..2084524 | - | 1194 | Protein_1962 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11725 () | 2084521..2084700 | - | 180 | Protein_1963 | IS66 family insertion sequence element accessory protein TnpB | - |
| EGX88_RS11730 () | 2084756..2085965 | + | 1210 | Protein_1964 | IS3 family transposase IS629 | Transposase |
| EGX88_RS11735 () | 2086010..2086180 | - | 171 | Protein_1965 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11740 () | 2086177..2086851 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11745 () | 2086936..2087220 | + | 285 | Protein_1967 | hypothetical protein | - |
| EGX88_RS11750 () | 2087392..2087721 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| EGX88_RS11755 () | 2087822..2087956 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| EGX88_RS11760 () | 2088058..2088204 | + | 147 | Protein_1970 | transposase domain-containing protein | - |
| EGX88_RS11765 () | 2088582..2089740 | - | 1159 | Protein_1971 | IS3 family transposase IS629 | Transposase |
| EGX88_RS11780 () | 2091286..2092442 | + | 1157 | WP_134797121.1 | IS3 family transposase IS600 | Transposase |
| EGX88_RS11790 () | 2092454..2092963 | + | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| EGX88_RS11795 () | 2092960..2093703 | + | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| EGX88_RS11800 () | 2093715..2094794 | + | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| EGX88_RS11805 () | 2094856..2095791 | + | 936 | WP_000986346.1 | L,D-transpeptidase | - |
| EGX88_RS11815 () | 2096250..2097167 | + | 918 | WP_001011443.1 | nitrogen assimilation transcriptional regulator NAC | - |
| EGX88_RS11820 () | 2097269..2098219 | + | 951 | WP_001010987.1 | HTH-type transcriptional regulator Cbl | - |
| EGX88_RS11830 () | 2098337..2099964 | + | 1628 | Protein_1980 | toxic metabolite efflux MATE transporter YeeO | - |
| EGX88_RS11840 () | 2100596..2101312 | - | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| EGX88_RS11845 () | 2101655..2103109 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| EGX88_RS11850 () | 2103211..2103417 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| EGX88_RS11855 () | 2103418..2104617 | - | 1200 | Protein_1984 | IS3 family transposase IS600 | Transposase |
| EGX88_RS11860 () | 2104682..2105188 | - | 507 | Protein_1985 | MFS transporter | - |
| EGX88_RS11865 () | 2105244..2106412 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| EGX88_RS11870 () | 2106519..2107781 | - | 1263 | Protein_1987 | Prophage integrase IntA ; Integrase | Integrase |
| EGX88_RS11880 () | 2108119..2108916 | - | 798 | WP_024260703.1 | DgsA anti-repressor MtfA | - |
| EGX88_RS11890 () | 2109127..2110167 | - | 1041 | WP_005096324.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| EGX88_RS11895 () | 2110167..2110307 | - | 141 | Protein_1990 | DUF4224 domain-containing protein | - |
| EGX88_RS11900 () | 2110334..2110750 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 2111332..2111390 | - | 59 | - | - | Antitoxin Detail |
| EGX88_RS11915 () | 2111402..2111557 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| EGX88_RS11925 () | 2111725..2112003 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| EGX88_RS11930 () | 2112005..2113063 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| EGX88_RS11935 () | 2113064..2113429 | + | 366 | WP_000140017.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EGX88_RS11940 () | 2113426..2114114 | + | 689 | Protein_1996 | bacteriophage antitermination protein Q | - |
| EGX88_RS11970 () | 2114910..2115125 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| EGX88_RS11975 () | 2115224..2115898 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11980 () | 2115895..2116245 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11985 () | 2116242..2117054 | + | 813 | Protein_2000 | IS66 family transposase ISSfl3 | Transposase |
| EGX88_RS11990 () | 2117208..2117531 | + | 324 | WP_000924704.1 | head-tail connector protein | - |
| EGX88_RS11995 () | 2117528..2117944 | + | 417 | WP_000702444.1 | phage head closure protein | - |
| EGX88_RS12000 () | 2117910..2118434 | + | 525 | WP_001076765.1 | hypothetical protein | - |
| EGX88_RS12005 () | 2118431..2118655 | + | 225 | Protein_2004 | hypothetical protein | - |
| EGX88_RS12010 () | 2118721..2119877 | + | 1157 | WP_094081532.1 | IS3 family transposase IS600 | Transposase |
| EGX88_RS12015 () | 2119902..2120261 | + | 360 | Protein_2006 | hypothetical protein | - |
| EGX88_RS12020 () | 2120271..2120432 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| EGX88_RS12025 () | 2120429..2121925 | + | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| EGX88_RS12030 () | 2121925..2122281 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| EGX88_RS12035 () | 2122281..2122616 | + | 336 | WP_001251340.1 | phage tail assembly protein | - |
| EGX88_RS12040 () | 2122701..2124650 | + | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| EGX88_RS12045 () | 2124718..2125200 | + | 483 | WP_000594909.1 | hypothetical protein | - |
| EGX88_RS12055 () | 2126048..2126905 | + | 858 | Protein_2014 | IS3 family transposase ISSd1 | Transposase |
| EGX88_RS12060 () | 2126946..2127425 | + | 480 | Protein_2015 | DUF4376 domain-containing protein | - |
| EGX88_RS12070 () | 2127605..2129248 | - | 1644 | WP_011110600.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| EGX88_RS12075 () | 2129564..2130223 | - | 660 | WP_029237390.1 | class I SAM-dependent methyltransferase | - |
| EGX88_RS12080 () | 2130288..2130557 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| EGX88_RS12090 () | 2131635..2132285 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| EGX88_RS12095 () | 2132543..2133178 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| EGX88_RS12100 () | 2133179..2134183 | - | 1005 | Protein_2021 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| EGX88_RS12105 () | 2134292..2134705 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| EGX88_RS12110 () | 2134838..2135509 | + | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| EGX88_RS12115 () | 2135509..2136456 | + | 948 | Protein_2024 | two-component system sensor histidine kinase HprS | - |
| EGX88_RS12125 () | 2137793..2137963 | - | 171 | Protein_2026 | porin | - |
| EGX88_RS12130 () | 2138066..2139294 | + | 1229 | WP_111778310.1 | IS3 family transposase IS2 | Transposase |
| EGX88_RS12135 () | 2139306..2140016 | - | 711 | Protein_2028 | porin | - |
| EGX88_RS12140 () | 2140133..2140243 | + | 111 | Protein_2029 | IS3 family transposase ISEhe3 | Transposase |
| EGX88_RS12145 () | 2140312..2141480 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| EGX88_RS12150 () | 2141437..2142533 | + | 1097 | WP_232046048.1 | IS3 family transposase ISEhe3 | Transposase |
| EGX88_RS12155 () | 2142534..2142791 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| EGX88_RS12160 () | 2142831..2143371 | + | 541 | Protein_2033 | phosphohydrolase | - |
| EGX88_RS12165 () | 2143438..2144856 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| EGX88_RS12170 () | 2144837..2145307 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| EGX88_RS12175 () | 2145296..2146216 | - | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| EGX88_RS12180 () | 2146389..2147306 | + | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| EGX88_RS12185 () | 2147385..2147567 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| EGX88_RS12190 () | 2147738..2149432 | + | 1695 | Protein_2039 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|