MGE detailed information
MGE type: Prophage MGE length: 57482 bp
Accession: NZ_CP033977 Location: 1564264..1621745 Organism: Staphylococcus aureus strain P2D15C1 Replicon: chromosome
Accession: NZ_CP033977 Location: 1564264..1621745 Organism: Staphylococcus aureus strain P2D15C1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFD78_RS07565 () | 1559587..1559835 | + | 249 | WP_001151997.1 | ferredoxin | - |
| EFD78_RS07570 () | 1559941..1560486 | - | 546 | WP_001186912.1 | ECF transporter S component | - |
| EFD78_RS07575 () | 1560888..1561844 | - | 957 | WP_000913227.1 | DUF1672 domain-containing protein | - |
| EFD78_RS14470 () | 1561898..1562303 | - | 406 | Protein_1441 | hypothetical protein | - |
| EFD78_RS07585 () | 1562315..1563211 | - | 897 | WP_000476354.1 | DUF1672 domain-containing protein | - |
| EFD78_RS07590 () | 1563269..1564174 | - | 906 | WP_000476865.1 | DUF1672 domain-containing protein | - |
| EFD78_RS07595 () | 1564264..1564479 | - | 216 | WP_000209712.1 | hypothetical protein | - |
| EFD78_RS07600 () | 1565202..1566656 | - | 1455 | WP_000909205.1 | N-acetylmuramoyl-L-alanine amidase | - |
| EFD78_RS07605 () | 1566667..1566969 | - | 303 | WP_000339141.1 | phage holin | - |
| EFD78_RS07610 () | 1567105..1567404 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| EFD78_RS07615 () | 1567450..1567614 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| EFD78_RS07620 () | 1567607..1567996 | - | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| EFD78_RS07625 () | 1567996..1569462 | - | 1467 | WP_000067132.1 | BppU family phage baseplate upper protein | - |
| EFD78_RS07630 () | 1569462..1571372 | - | 1911 | WP_000429551.1 | minor structural protein | - |
| EFD78_RS07635 () | 1571388..1571678 | - | 291 | WP_000179864.1 | hypothetical protein | - |
| EFD78_RS07640 () | 1571678..1573261 | - | 1584 | WP_000384474.1 | prophage endopeptidase tail family protein | - |
| EFD78_RS07645 () | 1573270..1574094 | - | 825 | WP_001190533.1 | phage tail family protein | - |
| EFD78_RS07650 () | 1574094..1580294 | - | 6201 | WP_001003458.1 | phage tail tape measure protein | - |
| EFD78_RS07655 () | 1580308..1580466 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| EFD78_RS07660 () | 1580508..1580858 | - | 351 | WP_000589165.1 | hypothetical protein | - |
| EFD78_RS07665 () | 1580916..1581371 | - | 456 | WP_000169128.1 | Ig domain-containing protein | - |
| EFD78_RS07670 () | 1581463..1582104 | - | 642 | WP_000807536.1 | tail protein | - |
| EFD78_RS07675 () | 1582139..1582534 | - | 396 | WP_001023802.1 | DUF3168 domain-containing protein | - |
| EFD78_RS07680 () | 1582535..1582936 | - | 402 | WP_000110020.1 | hypothetical protein | - |
| EFD78_RS07685 () | 1582933..1583265 | - | 333 | WP_000395501.1 | hypothetical protein | - |
| EFD78_RS07690 () | 1583277..1583555 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| EFD78_RS07695 () | 1583624..1584787 | - | 1164 | WP_001142739.1 | phage major capsid protein | - |
| EFD78_RS07700 () | 1584799..1585572 | - | 774 | WP_000061872.1 | Clp protease ClpP | - |
| EFD78_RS07705 () | 1585556..1586794 | - | 1239 | WP_001100660.1 | phage portal protein | - |
| EFD78_RS07710 () | 1586799..1588490 | - | 1692 | WP_000152858.1 | terminase large subunit | - |
| EFD78_RS07715 () | 1588480..1588785 | - | 306 | WP_000778935.1 | P27 family phage terminase small subunit | - |
| EFD78_RS07720 () | 1588910..1589230 | - | 321 | WP_000166884.1 | HNH endonuclease | - |
| EFD78_RS07725 () | 1589387..1589824 | - | 438 | WP_000513704.1 | transcriptional regulator | - |
| EFD78_RS07730 () | 1589837..1591204 | - | 1368 | WP_078069123.1 | DEAD/DEAH box helicase | - |
| EFD78_RS07735 () | 1591185..1591475 | - | 291 | WP_000665205.1 | VRR-NUC domain-containing protein | - |
| EFD78_RS07740 () | 1591609..1591713 | + | 105 | WP_015978074.1 | hypothetical protein | - |
| EFD78_RS07745 () | 1591816..1594263 | - | 2448 | WP_000884869.1 | virulence-associated E family protein | - |
| EFD78_RS07750 () | 1594316..1594516 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| EFD78_RS07755 () | 1594584..1594736 | - | 153 | WP_000595269.1 | transcriptional activator RinB | - |
| EFD78_RS07760 () | 1594733..1595122 | - | 390 | WP_001596346.1 | hypothetical protein | - |
| EFD78_RS07765 () | 1595112..1595348 | - | 237 | WP_000608283.1 | hypothetical protein | - |
| EFD78_RS07770 () | 1595341..1595544 | - | 204 | WP_000141259.1 | hypothetical protein | - |
| EFD78_RS07775 () | 1595541..1595747 | - | 207 | WP_000195832.1 | DUF1381 domain-containing protein | - |
| EFD78_RS07780 () | 1595784..1596320 | - | 537 | WP_156668017.1 | dUTPase | - |
| EFD78_RS07785 () | 1596313..1596483 | - | 171 | WP_000714407.1 | hypothetical protein | - |
| EFD78_RS07790 () | 1596470..1596724 | - | 255 | WP_001065040.1 | DUF1024 family protein | - |
| EFD78_RS07795 () | 1596739..1596981 | - | 243 | WP_000132194.1 | hypothetical protein | - |
| EFD78_RS07800 () | 1596996..1597196 | - | 201 | WP_000235324.1 | hypothetical protein | - |
| EFD78_RS07805 () | 1597199..1597456 | - | 258 | WP_000022728.1 | DUF3310 domain-containing protein | - |
| EFD78_RS07810 () | 1597456..1597857 | - | 402 | WP_000113974.1 | PVL family protein | - |
| EFD78_RS07815 () | 1597857..1598042 | - | 186 | WP_001164629.1 | DUF3113 family protein | - |
| EFD78_RS07820 () | 1598055..1600007 | - | 1953 | WP_156668018.1 | DNA polymerase | - |
| EFD78_RS07825 () | 1600076..1600633 | - | 558 | WP_000645042.1 | DUF2815 family protein | - |
| EFD78_RS07830 () | 1600660..1601826 | - | 1167 | WP_156675475.1 | DUF2800 domain-containing protein | - |
| EFD78_RS07835 () | 1601823..1602185 | - | 363 | WP_000985972.1 | hypothetical protein | - |
| EFD78_RS07840 () | 1602200..1602523 | - | 324 | WP_000174998.1 | hypothetical protein | - |
| EFD78_RS07845 () | 1602602..1602763 | - | 162 | WP_001285954.1 | DUF1270 domain-containing protein | - |
| EFD78_RS07850 () | 1602776..1603039 | - | 264 | WP_001124160.1 | IS3 family transposase ISVa4 | Transposase |
| EFD78_RS07855 () | 1603064..1603279 | - | 216 | WP_001097552.1 | hypothetical protein | - |
| EFD78_RS07860 () | 1603334..1603699 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| EFD78_RS07865 () | 1603668..1603913 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| EFD78_RS07870 () | 1603980..1604360 | + | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| EFD78_RS07875 () | 1604347..1604544 | - | 198 | WP_001148860.1 | hypothetical protein | - |
| EFD78_RS07880 () | 1604614..1604826 | + | 213 | WP_000362644.1 | hypothetical protein | - |
| EFD78_RS14475 () | 1604867..1605016 | - | 150 | WP_000771849.1 | hypothetical protein | - |
| EFD78_RS07885 () | 1605031..1605474 | - | 444 | WP_000435357.1 | hypothetical protein | - |
| EFD78_RS07890 () | 1605522..1605734 | - | 213 | WP_000213811.1 | helix-turn-helix transcriptional regulator | - |
| EFD78_RS07895 () | 1605886..1606617 | + | 732 | WP_000511090.1 | XRE family transcriptional regulator | - |
| EFD78_RS07900 () | 1606687..1606869 | + | 183 | WP_000705240.1 | hypothetical protein | - |
| EFD78_RS07905 () | 1606905..1607051 | + | 147 | WP_001795334.1 | hypothetical protein | - |
| EFD78_RS07910 () | 1607048..1607662 | - | 615 | WP_000191466.1 | hypothetical protein | - |
| EFD78_RS07915 () | 1607788..1608993 | + | 1206 | WP_000264750.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| EFD78_RS07920 () | 1609036..1611063 | - | 2028 | WP_001795335.1 | hypothetical protein | - |
| EFD78_RS07925 () | 1611056..1611982 | - | 927 | WP_001557355.1 | DUF1672 domain-containing protein | - |
| EFD78_RS07930 () | 1612226..1613977 | - | 1752 | WP_000987774.1 | two-component system sensor histidine kinase SrrB | - |
| EFD78_RS07935 () | 1613958..1614683 | - | 726 | WP_000064078.1 | Transcriptional regulatory protein SrrA | VF |
| EFD78_RS07940 () | 1614816..1615553 | - | 738 | WP_000159577.1 | rRNA pseudouridine synthase | - |
| EFD78_RS07945 () | 1615546..1616088 | - | 543 | WP_000368656.1 | SMC-Scp complex subunit ScpB | - |
| EFD78_RS07950 () | 1616081..1616812 | - | 732 | WP_000273371.1 | segregation/condensation protein A | - |
| EFD78_RS07955 () | 1616904..1617410 | + | 507 | WP_001183429.1 | DUF309 domain-containing protein | - |
| EFD78_RS07960 () | 1617488..1618375 | - | 888 | WP_000447733.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| EFD78_RS07965 () | 1618424..1618873 | - | 450 | WP_000392691.1 | transcriptional repressor | - |
| EFD78_RS07970 () | 1618978..1619520 | - | 543 | WP_000365240.1 | NUDIX hydrolase | - |
| EFD78_RS07975 () | 1619602..1620510 | + | 909 | WP_001171335.1 | aldo/keto reductase | - |
| EFD78_RS07980 () | 1620726..1620974 | - | 249 | WP_000995800.1 | hypothetical protein | - |
| EFD78_RS07985 () | 1620990..1621745 | - | 756 | WP_000678232.1 | SDR family oxidoreductase | - |
| EFD78_RS07990 () | 1621887..1622702 | + | 816 | WP_000779749.1 | pyrroline-5-carboxylate reductase | - |
| EFD78_RS07995 () | 1622805..1623725 | - | 921 | WP_000454063.1 | ribonuclease Z | - |
| EFD78_RS08000 () | 1624038..1625522 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
| EFD78_RS08005 () | 1625752..1626618 | + | 867 | WP_000382585.1 | AraC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|