MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 132944 bp
Accession: NZ_CP033648 Location: 1..132944 Organism: Burkholderia glumae strain YH43 Replicon: plasmid p1_YH43
Accession: NZ_CP033648 Location: 1..132944 Organism: Burkholderia glumae strain YH43 Replicon: plasmid p1_YH43
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFO25_RS32540 | 101..772 | + | 672 | WP_012734035.1 | AAA family ATPase | - |
| EFO25_RS32545 | 772..1737 | + | 966 | WP_012734036.1 | ParB/RepB/Spo0J family partition protein | - |
| EFO25_RS32550 | 2492..3349 | + | 858 | WP_012734037.1 | plasmid replication initiator TrfA | - |
| EFO25_RS32555 | 3613..4869 | + | 1257 | Protein_3 | IS21 family transposase ISAlisp1 | Transposase |
| EFO25_RS32560 | 4937..5803 | - | 867 | WP_012732871.1 | IS21 family transposase ISBcen28 | Transposase |
| EFO25_RS32565 | 5800..7056 | - | 1257 | WP_012734039.1 | IS21 family transposase ISBcen28 | Transposase |
| EFO25_RS32570 | 7181..7435 | + | 255 | Protein_6 | IS21 family transposase ISCsp4 | Transposase |
| EFO25_RS32575 | 7428..8183 | + | 756 | WP_012734041.1 | IS21 family transposase ISPa65 | Transposase |
| EFO25_RS32580 | 8214..9800 | - | 1587 | WP_012732733.1 | IS66 family transposase ISBmu30 | Transposase |
| EFO25_RS32585 | 9900..10253 | - | 354 | WP_012732734.1 | IS66 family transposase ISBmu30 | Transposase |
| EFO25_RS32590 | 10253..10708 | - | 456 | WP_012732735.1 | IS66 family transposase ISRtr5 | Transposase |
| EFO25_RS32595 | 11165..11467 | - | 303 | WP_257739416.1 | hypothetical protein | - |
| EFO25_RS32600 | 11540..11968 | - | 429 | WP_012734042.1 | type II toxin-antitoxin system VapC family toxin | - |
| EFO25_RS32605 | 11968..12225 | - | 258 | WP_012734043.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| EFO25_RS32610 | 12318..14588 | - | 2271 | WP_257739417.1 | IS91 family transposase ISAzo26 | Transposase |
| EFO25_RS32615 | 14659..15480 | - | 822 | WP_043308413.1 | hypothetical protein | - |
| EFO25_RS32620 | 15674..16207 | - | 534 | WP_148271068.1 | hypothetical protein | - |
| EFO25_RS32625 | 16530..17339 | - | 810 | Protein_17 | IS110 family transposase IS884 | Transposase |
| EFO25_RS32630 | 17527..18174 | - | 648 | Protein_18 | IS6 family transposase ISDge13 | Transposase |
| EFO25_RS32640 | 19830..23264 | + | 3435 | WP_012734047.1 | S-layer family protein | - |
| EFO25_RS32645 | 23764..25875 | + | 2112 | WP_043308443.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| EFO25_RS32650 | 25880..27298 | + | 1419 | WP_012734049.1 | hypothetical protein | VF |
| EFO25_RS32655 | 27288..28739 | + | 1452 | WP_012734050.1 | hypothetical protein | VF |
| EFO25_RS32660 | 28917..29132 | + | 216 | WP_237711043.1 | IS66 family transposase ISRm2 | Transposase |
| EFO25_RS32665 | 29122..30240 | - | 1119 | Protein_25 | IS66 family transposase ISAeh1 | Transposase |
| EFO25_RS32670 | 30267..31823 | - | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| EFO25_RS32675 | 31855..32205 | - | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| EFO25_RS32680 | 32181..32657 | - | 477 | WP_012734051.1 | IS66 family transposase ISRtr5 | Transposase |
| EFO25_RS32685 | 33159..33659 | + | 501 | WP_232252310.1 | hypothetical protein | VF |
| EFO25_RS32690 | 33787..34513 | - | 727 | Protein_30 | IS6 family transposase | - |
| EFO25_RS32695 | 34529..34927 | - | 399 | WP_012734052.1 | nuclear transport factor 2 family protein | - |
| EFO25_RS32700 | 35009..35950 | + | 942 | WP_012734053.1 | HTH-type transcriptional regulator ArgP | VF |
| EFO25_RS32705 | 35953..36165 | + | 213 | WP_017424862.1 | hypothetical protein | - |
| EFO25_RS32710 | 36932..38170 | - | 1239 | WP_045678675.1 | FAD-dependent monooxygenase | - |
| EFO25_RS32715 | 38898..39749 | - | 852 | WP_012734056.1 | HTH-type transcriptional activator RhaS | VF |
| EFO25_RS32720 | 39976..40395 | + | 420 | WP_012734057.1 | hypothetical protein | - |
| EFO25_RS32725 | 40703..41907 | + | 1205 | WP_085962364.1 | IS3 family transposase ISBugl1 | Transposase |
| EFO25_RS32730 | 42009..43246 | + | 1238 | WP_085962446.1 | IS3 family transposase IS1417 | Transposase |
| EFO25_RS32735 | 43278..43565 | + | 288 | Protein_39 | IS21 family transposase ISBmu3 | Transposase |
| EFO25_RS32740 | 43645..44691 | - | 1047 | WP_012734061.1 | IS481 family transposase IS1419 | Transposase |
| EFO25_RS32745 | 45404..45598 | - | 195 | WP_124837731.1 | hypothetical protein | - |
| EFO25_RS32750 | 45668..45970 | - | 303 | WP_127913981.1 | hypothetical protein | - |
| EFO25_RS32755 | 46034..46276 | - | 243 | WP_012734062.1 | hypothetical protein | - |
| EFO25_RS32760 | 46289..46552 | - | 264 | WP_017433216.1 | hypothetical protein | - |
| EFO25_RS32765 | 46564..46884 | - | 321 | WP_012734063.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| EFO25_RS32770 | 46878..47126 | - | 249 | WP_012734064.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| EFO25_RS32775 | 47238..47909 | - | 672 | WP_012734065.1 | site-specific integrase | - |
| EFO25_RS32780 | 48034..48306 | - | 273 | WP_234038082.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| EFO25_RS32785 | 48364..49917 | - | 1554 | WP_102952664.1 | IS91 family transposase ISAzo26 | Transposase |
| EFO25_RS32790 | 50914..51597 | + | 684 | WP_012734068.1 | Adenylyl-sulfate kinase | VF |
| EFO25_RS32795 | 51670..52485 | + | 816 | WP_035976812.1 | sulfotransferase | - |
| EFO25_RS32800 | 52601..52867 | - | 267 | Protein_52 | IS1182 family transposase ISThsp18 | Transposase |
| EFO25_RS32805 | 53017..54312 | + | 1296 | WP_012734070.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| EFO25_RS32810 | 54671..55690 | - | 1020 | WP_012734071.1 | IS110 family transposase IS884 | Transposase |
| EFO25_RS32815 | 55893..56710 | + | 818 | WP_085962447.1 | IS5-like element ISBugl2 family transposase | - |
| EFO25_RS32820 | 57010..57606 | + | 597 | WP_017432949.1 | HD-GYP domain-containing protein | - |
| EFO25_RS32825 | 57902..59000 | + | 1099 | Protein_57 | tyrosine-type recombinase/integrase | - |
| EFO25_RS32830 | 59124..60707 | - | 1584 | WP_012732724.1 | hypothetical protein | VF |
| EFO25_RS32835 | 61190..61534 | + | 345 | WP_017432531.1 | hypothetical protein | - |
| EFO25_RS32840 | 61574..63271 | + | 1698 | WP_012732723.1 | hypothetical protein | VF |
| EFO25_RS32845 | 63448..65172 | + | 1725 | WP_012734074.1 | hypothetical protein | VF |
| EFO25_RS32850 | 65391..65879 | + | 489 | WP_080569430.1 | hypothetical protein | - |
| EFO25_RS32855 | 66206..66587 | - | 382 | Protein_63 | transposase | - |
| EFO25_RS32860 | 66718..67535 | + | 818 | WP_085962346.1 | IS5-like element ISBugl2 family transposase | - |
| EFO25_RS32865 | 68407..68682 | + | 276 | Protein_65 | hypothetical protein | VF |
| EFO25_RS32870 | 69181..69912 | + | 732 | WP_232252309.1 | hypothetical protein | VF |
| EFO25_RS32875 | 70012..70711 | + | 700 | Protein_67 | IS3 family transposase | - |
| EFO25_RS32880 | 70801..71277 | + | 477 | WP_039203908.1 | IS66 family transposase ISRtr5 | Transposase |
| EFO25_RS32885 | 71253..71603 | + | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| EFO25_RS32890 | 71635..73191 | + | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| EFO25_RS32895 | 73218..73550 | + | 333 | Protein_71 | IS3 family transposase IS1416 | Transposase |
| EFO25_RS32900 | 73582..76116 | - | 2535 | WP_158335140.1 | Sensor histidine kinase RcsC | VF |
| EFO25_RS32905 | 76266..77045 | - | 780 | WP_012734079.1 | Sensor histidine kinase RcsC | VF |
| EFO25_RS32910 | 77265..78002 | - | 738 | WP_017423070.1 | Regulator of RpoS | VF |
| EFO25_RS32915 | 78217..79020 | + | 804 | Protein_75 | IS5 family transposase | - |
| EFO25_RS32925 | 80562..82049 | + | 1488 | WP_124837819.1 | hypothetical protein | - |
| EFO25_RS32930 | 82145..83992 | + | 1848 | WP_012734082.1 | clostripain-related cysteine peptidase | - |
| EFO25_RS32935 | 84171..84976 | + | 806 | WP_085962449.1 | IS5 family transposase IS1421 | Transposase |
| EFO25_RS32940 | 84951..85130 | - | 180 | Protein_80 | hypothetical protein | - |
| EFO25_RS32945 | 85252..85783 | + | 532 | Protein_81 | IS3 family transposase ISBvi3 | Transposase |
| EFO25_RS32950 | 85846..85986 | + | 141 | WP_080569432.1 | integrase | - |
| EFO25_RS32955 | 86245..86535 | - | 291 | WP_230674603.1 | DDE-type integrase/transposase/recombinase | - |
| EFO25_RS32960 | 86728..87015 | - | 288 | WP_017924497.1 | hypothetical protein | - |
| EFO25_RS32965 | 87213..87713 | - | 501 | WP_012734085.1 | hypothetical protein | VF |
| EFO25_RS32970 | 88073..89620 | - | 1548 | WP_012734086.1 | hypothetical protein | VF |
| EFO25_RS32975 | 89926..90547 | - | 622 | Protein_87 | DDE-type integrase/transposase/recombinase | - |
| EFO25_RS32980 | 90683..91342 | - | 660 | WP_012734087.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| EFO25_RS32985 | 91445..92227 | + | 783 | WP_012734088.1 | helix-turn-helix transcriptional regulator | - |
| EFO25_RS32995 | 94045..94299 | + | 255 | WP_012734091.1 | antitoxin | - |
| EFO25_RS33000 | 94290..94700 | + | 411 | WP_012734092.1 | type II toxin-antitoxin system VapC family toxin | - |
| EFO25_RS33005 | 94763..95080 | + | 318 | WP_043308427.1 | hypothetical protein | - |
| EFO25_RS33010 | 95115..95495 | + | 381 | WP_012734093.1 | hypothetical protein | - |
| EFO25_RS33015 | 95492..97333 | + | 1842 | WP_012734094.1 | site-specific integrase | - |
| EFO25_RS33020 | 97460..97771 | + | 312 | WP_127913983.1 | hypothetical protein | - |
| EFO25_RS33025 | 98408..98617 | + | 210 | WP_042968082.1 | hypothetical protein | - |
| EFO25_RS33030 | 99498..99803 | + | 306 | WP_012734095.1 | helix-turn-helix transcriptional regulator | - |
| EFO25_RS33035 | 100039..100755 | + | 717 | WP_167539778.1 | reverse transcriptase family protein | - |
| EFO25_RS33040 | 101019..101798 | + | 780 | WP_043308431.1 | hypothetical protein | - |
| EFO25_RS33045 | 101929..102297 | + | 369 | WP_045678674.1 | hypothetical protein | - |
| EFO25_RS33050 | 102340..102543 | + | 204 | Protein_102 | IS66 family transposase ISRm2 | Transposase |
| EFO25_RS33055 | 102630..103106 | + | 477 | WP_012734051.1 | IS66 family transposase ISRtr5 | Transposase |
| EFO25_RS33060 | 103082..103432 | + | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| EFO25_RS33065 | 103464..105020 | + | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| EFO25_RS33070 | 105551..105778 | - | 228 | WP_020379863.1 | tyrosine-type recombinase/integrase | - |
| EFO25_RS33075 | 106171..107286 | - | 1116 | WP_012734097.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| EFO25_RS33080 | 107399..108148 | - | 750 | Protein_108 | IS481 family transposase IS1419 | Transposase |
| EFO25_RS33085 | 108235..108690 | + | 456 | WP_012732735.1 | IS66 family transposase ISRtr5 | Transposase |
| EFO25_RS33090 | 108808..109854 | + | 1047 | WP_012734099.1 | IS481 family transposase IS1419 | Transposase |
| EFO25_RS33095 | 109912..110265 | + | 354 | WP_012732734.1 | IS66 family transposase ISBmu30 | Transposase |
| EFO25_RS33100 | 110365..111951 | + | 1587 | WP_012732733.1 | IS66 family transposase ISBmu30 | Transposase |
| EFO25_RS33105 | 112010..112312 | - | 303 | Protein_113 | IS481 family transposase IS1419 | Transposase |
| EFO25_RS33110 | 113214..113837 | + | 624 | WP_045678665.1 | FMN reductase | - |
| EFO25_RS33115 | 113867..114982 | + | 1116 | WP_012734101.1 | dimethyl sulfone monooxygenase SfnG | - |
| EFO25_RS33120 | 115138..115506 | - | 369 | Protein_116 | IS6 family transposase | - |
| EFO25_RS33125 | 115804..116829 | - | 1026 | WP_236702755.1 | thioredoxin | - |
| EFO25_RS33130 | 116799..117041 | - | 243 | WP_236702757.1 | thioredoxin domain-containing protein | - |
| EFO25_RS33135 | 117123..118895 | - | 1773 | WP_012734102.1 | ABC transporter ATP-binding protein/permease | - |
| EFO25_RS33140 | 118892..119314 | - | 423 | WP_012734103.1 | biopolymer transporter ExbD | - |
| EFO25_RS33145 | 119329..120063 | - | 735 | WP_012733849.1 | MotA/TolQ/ExbB proton channel family protein | - |
| EFO25_RS33150 | 120087..120833 | - | 747 | WP_232252306.1 | hypothetical protein | VF |
| EFO25_RS33155 | 120865..123240 | - | 2376 | WP_232252305.1 | TonB-dependent receptor | - |
| EFO25_RS33160 | 123554..124018 | - | 465 | WP_012734106.1 | Lrp/AsnC family transcriptional regulator | - |
| EFO25_RS33165 | 124241..124462 | - | 222 | WP_017433768.1 | hypothetical protein | - |
| EFO25_RS33170 | 124612..124806 | - | 195 | WP_124837685.1 | hypothetical protein | - |
| EFO25_RS33175 | 124865..125215 | - | 351 | WP_012734107.1 | type II toxin-antitoxin system ChpB family toxin | Toxin Detail |
| EFO25_RS33180 | 125209..125460 | - | 252 | WP_012734108.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| EFO25_RS33185 | 125723..126130 | - | 408 | WP_230674618.1 | hypothetical protein | - |
| EFO25_RS33190 | 126233..128068 | - | 1836 | WP_012732711.1 | site-specific integrase | - |
| EFO25_RS33195 | 128071..128412 | - | 342 | WP_012732710.1 | hypothetical protein | - |
| EFO25_RS33200 | 128469..128714 | - | 246 | WP_127913916.1 | hypothetical protein | - |
| EFO25_RS33205 | 128711..128953 | - | 243 | WP_124837682.1 | hypothetical protein | - |
| EFO25_RS33210 | 128967..129251 | - | 285 | WP_017432347.1 | hypothetical protein | - |
| EFO25_RS33215 | 129639..129956 | - | 318 | WP_148271069.1 | hypothetical protein | - |
| EFO25_RS33220 | 130140..130421 | - | 282 | WP_043308454.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EFO25_RS33225 | 130425..130880 | - | 456 | WP_012734111.1 | hypothetical protein | - |
| EFO25_RS33230 | 131088..131330 | - | 243 | WP_043308436.1 | hypothetical protein | - |
| EFO25_RS33235 | 131490..131792 | - | 303 | WP_012734112.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EFO25_RS33240 | 131782..132027 | - | 246 | WP_012734113.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| EFO25_RS33245 | 132181..132375 | - | 195 | WP_043308437.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|