MGE detailed information
MGE type: Prophage MGE length: 80591 bp
Accession: NZ_CP033510 Location: 3095116..3175706 Organism: Shigella flexneri strain 2016AM-0877 Replicon: chromosome
Accession: NZ_CP033510 Location: 3095116..3175706 Organism: Shigella flexneri strain 2016AM-0877 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EEL47_RS15530 (3094274) | 3094274..3095077 | + | 804 | WP_000997046.1 | 2,5-didehydrogluconate reductase DkgB | - |
| EEL47_RS15535 (3095116) | 3095116..3096462 | - | 1347 | WP_005086990.1 | IS4 family transposase IS4 | Transposase |
| EEL47_RS15540 (3096512) | 3096512..3097426 | - | 915 | WP_000648578.1 | HTH-type transcriptional regulator DmlR | VF |
| EEL47_RS15545 (3097667) | 3097667..3098467 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| EEL47_RS15550 (3098545) | 3098545..3099315 | + | 771 | WP_000211683.1 | class I SAM-dependent methyltransferase | - |
| EEL47_RS15555 (3099363) | 3099363..3100709 | - | 1347 | WP_000644679.1 | Membrane-bound lytic murein transglycosylase D | VF |
| EEL47_RS15560 (3100781) | 3100781..3101536 | - | 756 | WP_001052754.1 | hydroxyacylglutathione hydrolase | - |
| EEL47_RS15565 (3101570) | 3101570..3102292 | + | 723 | WP_005060310.1 | class I SAM-dependent methyltransferase | - |
| EEL47_RS15570 (3102289) | 3102289..3102756 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| EEL47_RS15575 (3102821) | 3102821..3103552 | + | 732 | WP_001366128.1 | DNA polymerase III subunit epsilon | - |
| EEL47_RS15585 (3103892) | 3103892..3104938 | - | 1047 | WP_000402248.1 | hypothetical protein | VF |
| EEL47_RS15590 (3104952) | 3104952..3105511 | - | 560 | Protein_2966 | hypothetical protein | VF |
| EEL47_RS15595 (3105508) | 3105508..3107391 | - | 1884 | WP_000371478.1 | type VI secretion system baseplate subunit TssF | - |
| EEL47_RS15600 (3107407) | 3107407..3107901 | - | 495 | WP_001276640.1 | hypothetical protein | VF |
| EEL47_RS15605 (3107898) | 3107898..3108728 | - | 831 | Protein_2969 | hypothetical protein | VF |
| EEL47_RS26335 (3108715) | 3108715..3109278 | - | 564 | WP_232046051.1 | type VI secretion system-associated protein TagK | - |
| EEL47_RS26340 (3109330) | 3109330..3109629 | - | 300 | WP_000804009.1 | FHA domain-containing protein | - |
| EEL47_RS15615 (3109682) | 3109682..3110955 | + | 1274 | WP_094081497.1 | IS3 family transposase IS2 | Transposase |
| EEL47_RS15620 (3111012) | 3111012..3111299 | - | 288 | WP_000343116.1 | hypothetical protein | - |
| EEL47_RS15625 (3111377) | 3111377..3112545 | + | 1169 | WP_094081496.1 | IS3 family transposase ISLad1 | Transposase |
| EEL47_RS15630 (3112551) | 3112551..3113594 | + | 1044 | Protein_2975 | terminase large subunit | - |
| EEL47_RS15635 (3113595) | 3113595..3115760 | + | 2166 | WP_000752837.1 | portal protein | - |
| EEL47_RS15640 (3115774) | 3115774..3116685 | + | 912 | WP_000373012.1 | scaffold protein | - |
| EEL47_RS15645 (3116685) | 3116685..3117980 | + | 1296 | WP_001196950.1 | P22 phage major capsid protein family protein | - |
| EEL47_RS15650 (3118025) | 3118025..3118255 | + | 231 | WP_005053303.1 | hypothetical protein | - |
| EEL47_RS15655 (3118233) | 3118233..3118733 | + | 501 | WP_001054834.1 | packaged DNA stabilization gp4 family protein | - |
| EEL47_RS15660 (3118733) | 3118733..3120151 | + | 1419 | WP_001122382.1 | packaged DNA stabilization protein gp10 | - |
| EEL47_RS15665 (3120151) | 3120151..3120999 | + | 849 | WP_000785540.1 | tail needle knob protein | - |
| EEL47_RS15670 (3120999) | 3120999..3121454 | + | 456 | WP_000627639.1 | DUF2824 family protein | - |
| EEL47_RS15675 (3121457) | 3121457..3122149 | + | 693 | WP_000964877.1 | DNA transfer protein | - |
| EEL47_RS15680 (3122159) | 3122159..3123490 | + | 1332 | WP_000246949.1 | phage DNA ejection protein | - |
| EEL47_RS15685 (3123491) | 3123491..3125221 | + | 1731 | WP_005053293.1 | lytic transglycosylase domain-containing protein | - |
| EEL47_RS15690 (3125347) | 3125347..3126556 | + | 1210 | Protein_2987 | IS3 family transposase IS629 | Transposase |
| EEL47_RS15695 (3126607) | 3126607..3126927 | - | 321 | WP_005053289.1 | phosphate starvation-inducible protein PsiF | - |
| EEL47_RS15700 (3127046) | 3127046..3128461 | - | 1416 | WP_005053287.1 | alkaline phosphatase | - |
| EEL47_RS15705 (3128562) | 3128562..3128822 | - | 261 | WP_000792969.1 | anti-adapter protein IraP | - |
| EEL47_RS25735 (3129004) | 3129004..3129207 | - | 204 | WP_023517632.1 | hypothetical protein | - |
| EEL47_RS15710 (3129285) | 3129285..3130379 | + | 1095 | WP_000413677.1 | D-alanine--D-alanine ligase | - |
| EEL47_RS15715 (3130403) | 3130403..3130615 | - | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| EEL47_RS15720 (3130875) | 3130875..3131183 | + | 309 | WP_000763148.1 | YaiY family protein | - |
| EEL47_RS15725 (3131242) | 3131242..3132336 | - | 1095 | WP_000092054.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| EEL47_RS15730 (3132349) | 3132349..3133569 | - | 1221 | WP_001342332.1 | peptide antibiotic transporter SbmA | - |
| EEL47_RS15735 (3133921) | 3133921..3135078 | + | 1158 | WP_000830735.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| EEL47_RS15740 (3135079) | 3135079..3135582 | - | 504 | WP_000953938.1 | helix-turn-helix domain-containing protein | - |
| EEL47_RS15745 (3135670) | 3135670..3136197 | - | 528 | Protein_2999 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| EEL47_RS15750 (3136217) | 3136217..3137262 | - | 1046 | Protein_3000 | IS3 family transposase ISEhe3 | Transposase |
| EEL47_RS15760 (3138524) | 3138524..3138631 | - | 108 | Protein_3002 | IS3 family transposase ISEhe3 | Transposase |
| EEL47_RS15765 (3138695) | 3138695..3139228 | - | 534 | Protein_3003 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| EEL47_RS15775 (3140588) | 3140588..3141285 | + | 698 | WP_226489616.1 | IS1 family transposase IS1X2 | Transposase |
| EEL47_RS15780 (3141333) | 3141333..3141701 | - | 369 | Protein_3006 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| EEL47_RS15785 (3142225) | 3142225..3143199 | + | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| EEL47_RS15790 (3143305) | 3143305..3144156 | - | 852 | WP_000004031.1 | taurine dioxygenase | - |
| EEL47_RS15795 (3144153) | 3144153..3144980 | - | 828 | WP_000114607.1 | taurine ABC transporter permease TauC | - |
| EEL47_RS15800 (3144977) | 3144977..3145744 | - | 768 | WP_000939367.1 | Taurine import ATP-binding protein TauB | VF |
| EEL47_RS15805 (3145757) | 3145757..3146683 | - | 927 | WP_045177322.1 | taurine ABC transporter substrate-binding protein | - |
| EEL47_RS15810 (3146950) | 3146950..3147195 | - | 246 | Protein_3012 | hypothetical protein | - |
| EEL47_RS15820 (3148053) | 3148053..3148721 | + | 669 | WP_000003122.1 | protein YkgH | - |
| EEL47_RS15825 (3148964) | 3148964..3149659 | - | 696 | WP_000370403.1 | lactate utilization protein C | - |
| EEL47_RS15830 (3149652) | 3149652..3151079 | - | 1428 | WP_000023933.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| EEL47_RS15835 (3151090) | 3151090..3151809 | - | 720 | WP_001102097.1 | (Fe-S)-binding protein | - |
| EEL47_RS15840 (3152228) | 3152228..3152925 | + | 698 | WP_232046045.1 | IS1 family transposase IS1X2 | Transposase |
| EEL47_RS15845 (3153110) | 3153110..3153595 | + | 486 | WP_001201712.1 | hypothetical protein | - |
| EEL47_RS15850 (3153592) | 3153592..3153978 | + | 387 | WP_000667623.1 | hypothetical protein | - |
| EEL47_RS15855 (3154003) | 3154003..3156216 | + | 2214 | WP_069101199.1 | Actin cross-linking toxin VgrG1 | VF |
| EEL47_RS26345 (3156239) | 3156239..3156439 | + | 201 | WP_011110542.1 | DcrB-related protein | - |
| EEL47_RS26350 (3156472) | 3156472..3156684 | + | 213 | WP_072075142.1 | DcrB-related protein | - |
| EEL47_RS15865 (3156706) | 3156706..3157113 | + | 408 | WP_005053237.1 | PAAR domain-containing protein | - |
| EEL47_RS15870 (3157110) | 3157110..3159398 | + | 2289 | WP_000568701.1 | DUF6531 domain-containing protein | - |
| EEL47_RS15875 (3159395) | 3159395..3160384 | + | 990 | WP_005053234.1 | Putative deoxyribonuclease RhsC | VF |
| EEL47_RS15880 (3160484) | 3160484..3160687 | + | 204 | WP_128567422.1 | hypothetical protein | - |
| EEL47_RS15885 (3160705) | 3160705..3161025 | + | 321 | WP_000343515.1 | hypothetical protein | - |
| EEL47_RS15890 (3161091) | 3161091..3161323 | - | 233 | Protein_3029 | type I toxin-antitoxin system SymE family toxin | - |
| EEL47_RS15895 (3161433) | 3161433..3162203 | - | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| EEL47_RS15900 (3162384) | 3162384..3162830 | + | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| EEL47_RS15905 (3162873) | 3162873..3165317 | - | 2445 | WP_000973114.1 | Acyl-coenzyme A dehydrogenase | VF |
| EEL47_RS15910 (3165557) | 3165557..3166135 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| EEL47_RS15915 (3166341) | 3166341..3167108 | + | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| EEL47_RS15920 (3167079) | 3167079..3167819 | - | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| EEL47_RS15925 (3168203) | 3168203..3168724 | + | 522 | Protein_3036 | Murein DD-endopeptidase MepH | VF |
| EEL47_RS15930 (3168900) | 3168900..3169397 | + | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| EEL47_RS15935 (3169614) | 3169614..3171326 | - | 1713 | Protein_3038 | Flagellar biosynthesis protein FlhA | VF |
| EEL47_RS15940 (3171298) | 3171298..3172083 | + | 786 | WP_000207560.1 | Chemotaxis protein LafU | VF |
| EEL47_RS15945 (3172154) | 3172154..3173209 | + | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| EEL47_RS15950 (3173261) | 3173261..3173554 | + | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| EEL47_RS15955 (3173557) | 3173557..3173955 | + | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| EEL47_RS15960 (3173965) | 3173965..3174417 | + | 453 | WP_001059860.1 | GNAT family N-acetyltransferase | - |
| EEL47_RS15965 (3174663) | 3174663..3175706 | + | 1044 | WP_005053205.1 | RNA ligase RtcB family protein | - |
| EEL47_RS15970 (3175822) | 3175822..3176382 | + | 561 | Protein_3045 | peptide chain release factor H | - |
| EEL47_RS15975 (3176439) | 3176439..3177896 | - | 1458 | WP_001293030.1 | cytosol nonspecific dipeptidase | - |
| EEL47_RS15980 (3178158) | 3178158..3178616 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| - (3179212) | 3179212..3179292 | + | 81 | NuclAT_6 | - | - |
| - (3179212) | 3179212..3179292 | + | 81 | NuclAT_6 | - | - |
| - (3179212) | 3179212..3179292 | + | 81 | NuclAT_6 | - | - |
| - (3179212) | 3179212..3179292 | + | 81 | NuclAT_6 | - | - |
| EEL47_RS15985 (3178708) | 3178708..3179952 | + | 1245 | WP_000189558.1 | esterase FrsA | - |
| EEL47_RS15990 (3180010) | 3180010..3180411 | + | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|