MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 69788 bp
Accession: NZ_CP033040 Location: 1820621..1890408 Organism: Thiomicrorhabdus indica strain 13-15A Replicon: chromosome
Accession: NZ_CP033040 Location: 1820621..1890408 Organism: Thiomicrorhabdus indica strain 13-15A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9T12_RS07915 () | 1816895..1817845 | + | 951 | WP_130537663.1 | diguanylate cyclase | - |
| D9T12_RS07920 () | 1817991..1818446 | - | 456 | WP_130537664.1 | DUF4345 domain-containing protein | - |
| D9T12_RS07925 () | 1818487..1819317 | - | 831 | WP_130537665.1 | NAD(P)H-binding protein | - |
| D9T12_RS07930 () | 1819395..1820417 | + | 1023 | WP_206199083.1 | cupin domain-containing protein | - |
| D9T12_RS07935 () | 1820729..1821550 | + | 822 | WP_130537666.1 | ParA family protein | - |
| D9T12_RS07940 () | 1821550..1823178 | + | 1629 | WP_130537667.1 | ParB N-terminal domain-containing protein | - |
| D9T12_RS07945 () | 1823171..1823758 | + | 588 | WP_130537668.1 | DUF2857 family protein | - |
| D9T12_RS07950 () | 1823761..1824642 | + | 882 | WP_165395065.1 | replication initiator protein A | - |
| D9T12_RS07955 () | 1825535..1825777 | + | 243 | WP_130537670.1 | hypothetical protein | - |
| D9T12_RS07960 () | 1825793..1826101 | + | 309 | WP_130537671.1 | hypothetical protein | - |
| D9T12_RS07965 () | 1826201..1826443 | + | 243 | WP_130537672.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| D9T12_RS07970 () | 1826436..1826837 | + | 402 | WP_130537673.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| D9T12_RS07975 () | 1826944..1827555 | + | 612 | WP_130537674.1 | hypothetical protein | - |
| D9T12_RS07980 () | 1827911..1828096 | + | 186 | WP_130537675.1 | hypothetical protein | - |
| D9T12_RS07985 () | 1828270..1828917 | - | 648 | WP_130537676.1 | hypothetical protein | - |
| D9T12_RS07990 () | 1828910..1830004 | - | 1095 | WP_206199084.1 | AAA family ATPase | - |
| D9T12_RS07995 () | 1830034..1830582 | - | 549 | WP_130537678.1 | Tn3 family transposase ISPsy42 | Transposase |
| D9T12_RS08000 () | 1830839..1831117 | - | 279 | WP_130537679.1 | hypothetical protein | - |
| D9T12_RS08005 () | 1831107..1831802 | - | 696 | WP_130537680.1 | hypothetical protein | - |
| D9T12_RS08010 () | 1832048..1832587 | - | 540 | WP_130537681.1 | hypothetical protein | - |
| D9T12_RS08015 () | 1832873..1833088 | + | 216 | WP_130537682.1 | hypothetical protein | - |
| D9T12_RS08020 () | 1833251..1833445 | - | 195 | WP_130537683.1 | hypothetical protein | - |
| D9T12_RS08025 () | 1833752..1833976 | - | 225 | WP_130537684.1 | hypothetical protein | - |
| D9T12_RS08030 () | 1834021..1834380 | - | 360 | WP_130537685.1 | hypothetical protein | - |
| D9T12_RS08035 () | 1834840..1835400 | - | 561 | WP_165395066.1 | hypothetical protein | - |
| D9T12_RS08040 () | 1835808..1836221 | - | 414 | WP_130537687.1 | hypothetical protein | - |
| D9T12_RS12420 () | 1836327..1836482 | - | 156 | WP_165395067.1 | hypothetical protein | - |
| D9T12_RS12425 () | 1836842..1836991 | + | 150 | WP_165395068.1 | hypothetical protein | - |
| D9T12_RS08045 () | 1837070..1837549 | - | 480 | WP_130537688.1 | RES family NAD+ phosphorylase | - |
| D9T12_RS08050 () | 1837546..1837968 | - | 423 | WP_165395069.1 | DUF2384 domain-containing protein | - |
| D9T12_RS08055 () | 1838310..1838564 | + | 255 | WP_130537690.1 | hypothetical protein | - |
| D9T12_RS08060 () | 1838620..1840311 | - | 1692 | WP_130537691.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| D9T12_RS08065 () | 1840311..1841681 | - | 1371 | WP_130537692.1 | hypothetical protein | - |
| D9T12_RS08070 () | 1841681..1842136 | - | 456 | WP_165395070.1 | DUF1525 domain-containing protein | - |
| D9T12_RS08075 () | 1842126..1845017 | - | 2892 | WP_130537694.1 | conjugative transfer ATPase | - |
| D9T12_RS08080 () | 1845018..1845383 | - | 366 | WP_130537695.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| D9T12_RS08085 () | 1845343..1846782 | - | 1440 | WP_130537696.1 | TIGR03752 family integrating conjugative element protein | - |
| D9T12_RS08090 () | 1846782..1847630 | - | 849 | WP_130537697.1 | DUF3438 family protein | - |
| D9T12_RS08095 () | 1847637..1848356 | - | 720 | WP_130537698.1 | DUF2895 family protein | - |
| D9T12_RS08100 () | 1848356..1848682 | - | 327 | WP_130537699.1 | DUF3487 family protein | - |
| D9T12_RS08105 () | 1848682..1849083 | - | 402 | WP_130537700.1 | hypothetical protein | - |
| D9T12_RS08110 () | 1849124..1849360 | - | 237 | WP_130537701.1 | hypothetical protein | - |
| D9T12_RS08115 () | 1849372..1849740 | - | 369 | WP_206199085.1 | RAQPRD family integrative conjugative element protein | - |
| D9T12_RS08120 () | 1849928..1850587 | - | 660 | WP_130537702.1 | DUF4400 domain-containing protein | - |
| D9T12_RS08125 () | 1850587..1852677 | - | 2091 | WP_130537703.1 | type IV conjugative transfer system coupling protein TraD | - |
| D9T12_RS08130 () | 1852677..1853123 | - | 447 | WP_165395071.1 | DUF2859 domain-containing protein | - |
| D9T12_RS08135 () | 1853089..1853544 | - | 456 | WP_130537705.1 | hypothetical protein | VF |
| D9T12_RS08140 () | 1853580..1854332 | - | 753 | WP_130537706.1 | hypothetical protein | - |
| D9T12_RS08145 () | 1854349..1855452 | - | 1104 | WP_165395072.1 | TraU family protein | - |
| D9T12_RS08150 () | 1855499..1856824 | - | 1326 | WP_130537708.1 | hypothetical protein | - |
| D9T12_RS08155 () | 1856848..1857633 | - | 786 | WP_130537709.1 | EAL domain-containing protein | - |
| D9T12_RS08160 () | 1857645..1858601 | - | 957 | WP_130537710.1 | hypothetical protein | - |
| D9T12_RS08165 () | 1858773..1859609 | - | 837 | WP_130537711.1 | hypothetical protein | - |
| D9T12_RS08170 () | 1859621..1860952 | - | 1332 | WP_130537712.1 | DUF1566 domain-containing protein | - |
| D9T12_RS08175 () | 1861066..1861440 | - | 375 | WP_130537713.1 | four helix bundle protein | - |
| D9T12_RS08180 () | 1861503..1862345 | - | 843 | WP_130537714.1 | DUF1566 domain-containing protein | - |
| D9T12_RS08185 () | 1862353..1863051 | - | 699 | WP_130537715.1 | type II secretion system GspH family protein | - |
| D9T12_RS08190 () | 1863026..1863475 | - | 450 | WP_130537716.1 | hypothetical protein | - |
| D9T12_RS08195 () | 1863510..1864469 | - | 960 | WP_130537717.1 | Flp pilus assembly complex ATPase component TadA | - |
| D9T12_RS08200 () | 1864487..1865116 | - | 630 | WP_130537718.1 | type II secretion system protein | - |
| D9T12_RS08205 () | 1865137..1866168 | - | 1032 | WP_130537719.1 | type II secretion system F family protein | - |
| D9T12_RS08210 () | 1866165..1867736 | - | 1572 | WP_130537720.1 | Flp pilus assembly complex ATPase component TadA | - |
| D9T12_RS08215 () | 1867733..1869082 | - | 1350 | WP_130537721.1 | type 4b pilus protein PilO2 | - |
| D9T12_RS08220 () | 1869087..1869533 | - | 447 | WP_130537722.1 | hypothetical protein | - |
| D9T12_RS08225 () | 1869536..1871098 | - | 1563 | WP_165395073.1 | hypothetical protein | - |
| D9T12_RS08230 () | 1871103..1872278 | - | 1176 | WP_130537724.1 | hypothetical protein | VF |
| D9T12_RS12430 () | 1872574..1872720 | - | 147 | WP_165395074.1 | hypothetical protein | - |
| D9T12_RS08235 () | 1873000..1873989 | - | 990 | WP_130537725.1 | DUF1738 domain-containing protein | - |
| D9T12_RS12435 () | 1874241..1874387 | - | 147 | WP_165395075.1 | hypothetical protein | - |
| D9T12_RS08240 () | 1874490..1874729 | - | 240 | WP_130537726.1 | hypothetical protein | - |
| D9T12_RS08245 () | 1874827..1875291 | - | 465 | WP_130537727.1 | hypothetical protein | - |
| D9T12_RS08250 () | 1875374..1875802 | - | 429 | WP_130537728.1 | hypothetical protein | - |
| D9T12_RS08255 () | 1875883..1876068 | - | 186 | WP_130537729.1 | hypothetical protein | - |
| D9T12_RS08260 () | 1876864..1877403 | - | 540 | WP_130537730.1 | DUF3577 domain-containing protein | - |
| D9T12_RS08265 () | 1877600..1879723 | - | 2124 | WP_130537731.1 | type I DNA topoisomerase | - |
| D9T12_RS08270 () | 1879720..1879902 | - | 183 | WP_130537732.1 | hypothetical protein | - |
| D9T12_RS08275 () | 1879907..1880422 | - | 516 | WP_130537733.1 | single-stranded DNA-binding protein | - |
| D9T12_RS08280 () | 1880441..1880671 | - | 231 | WP_130537734.1 | helix-turn-helix transcriptional regulator | - |
| D9T12_RS08285 () | 1880879..1881373 | - | 495 | WP_130537735.1 | hypothetical protein | - |
| D9T12_RS08290 () | 1881756..1882082 | - | 327 | WP_130537736.1 | hypothetical protein | - |
| D9T12_RS08295 () | 1882079..1882588 | - | 510 | WP_130537737.1 | hypothetical protein | - |
| D9T12_RS08300 () | 1882578..1882808 | - | 231 | WP_130537738.1 | hypothetical protein | - |
| D9T12_RS08305 () | 1882944..1883930 | - | 987 | WP_130537739.1 | DNA-binding protein | - |
| D9T12_RS08310 () | 1884441..1885436 | - | 996 | WP_130537740.1 | hypothetical protein | - |
| D9T12_RS08315 () | 1885429..1886166 | - | 738 | WP_165395076.1 | TIGR03761 family integrating conjugative element protein | - |
| D9T12_RS08320 () | 1886347..1886685 | + | 339 | WP_130537742.1 | hypothetical protein | - |
| D9T12_RS08325 () | 1886675..1887073 | + | 399 | WP_130537743.1 | hypothetical protein | - |
| D9T12_RS08330 () | 1887058..1889202 | + | 2145 | WP_130537744.1 | TraI domain-containing protein | - |
| D9T12_RS08335 () | 1889199..1890047 | + | 849 | WP_130537745.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| D9T12_RS08345 () | 1890703..1891992 | - | 1290 | WP_130537746.1 | serine--tRNA ligase | - |
| D9T12_RS08350 () | 1892072..1892467 | - | 396 | WP_130537747.1 | fluoride efflux transporter CrcB | - |
| D9T12_RS08355 () | 1892600..1893967 | - | 1368 | WP_130537748.1 | replication-associated recombination protein A | - |
| D9T12_RS08360 () | 1894007..1894699 | - | 693 | WP_130537749.1 | outer membrane lipoprotein carrier protein LolA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|