MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73407 bp
Accession: NZ_CP032908 Location: 1061454..1134860 Organism: Helicobacter pylori strain 23-A-EK1 Replicon: chromosome
Accession: NZ_CP032908 Location: 1061454..1134860 Organism: Helicobacter pylori strain 23-A-EK1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4I31_RS05085 () | 1056852..1057442 | - | 591 | WP_139534908.1 | dephospho-CoA kinase | - |
| D4I31_RS05090 () | 1057444..1058232 | - | 789 | WP_139534909.1 | polyamine aminopropyltransferase | - |
| D4I31_RS05095 () | 1058321..1059208 | - | 888 | WP_139534910.1 | hypothetical protein | - |
| D4I31_RS05100 () | 1059285..1060673 | + | 1389 | WP_139534911.1 | ribosome biogenesis GTPase Der | - |
| D4I31_RS05105 () | 1060814..1061098 | + | 285 | WP_001029077.1 | HU family DNA-binding protein | - |
| D4I31_RS05115 () | 1061783..1062388 | + | 606 | WP_001236594.1 | hypothetical protein | VF |
| D4I31_RS05120 () | 1062407..1063024 | + | 618 | WP_139534912.1 | hypothetical protein | - |
| D4I31_RS05125 () | 1063021..1064784 | + | 1764 | WP_139534913.1 | OmpP1/FadL family transporter | - |
| D4I31_RS05130 () | 1064806..1065789 | + | 984 | WP_162967321.1 | UDP-N-acetylglucosamine 4,6-dehydratase (inverting) | VF |
| D4I31_RS05135 () | 1065786..1067063 | + | 1278 | WP_139534914.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| D4I31_RS05140 () | 1067063..1067800 | + | 738 | WP_139534915.1 | hypothetical protein | - |
| D4I31_RS05145 () | 1067832..1068494 | - | 663 | WP_139534916.1 | thiamine phosphate synthase | - |
| D4I31_RS05150 () | 1068487..1069296 | - | 810 | WP_139534917.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| D4I31_RS05155 () | 1069293..1070072 | - | 780 | WP_201738183.1 | hydroxyethylthiazole kinase | - |
| D4I31_RS05160 () | 1070160..1073159 | - | 3000 | WP_139534919.1 | type I restriction endonuclease subunit R | - |
| D4I31_RS05165 () | 1073168..1074442 | - | 1275 | WP_139534920.1 | restriction endonuclease subunit S | - |
| D4I31_RS05170 () | 1074453..1076027 | - | 1575 | WP_139534921.1 | type I restriction-modification system subunit M | - |
| D4I31_RS05180 () | 1076206..1076892 | + | 687 | WP_139534922.1 | Phosphatidylglycerophosphatase B | VF |
| D4I31_RS05185 () | 1076915..1077871 | - | 957 | WP_139534923.1 | COG2958 family protein | - |
| D4I31_RS05190 () | 1077868..1079469 | - | 1602 | WP_139534924.1 | ATP-binding cassette domain-containing protein | - |
| D4I31_RS05195 () | 1079669..1080646 | + | 978 | WP_201738120.1 | GMP reductase | - |
| D4I31_RS05200 () | 1080803..1081381 | - | 579 | WP_022576515.1 | Phosphoheptose isomerase 1 | VF |
| D4I31_RS05205 () | 1081374..1082759 | - | 1386 | WP_139534926.1 | Bifunctional protein HldE | VF |
| D4I31_RS05210 () | 1082756..1083748 | - | 993 | WP_139534927.1 | ADP-L-glycero-D-manno-heptose-6-epimerase | VF |
| D4I31_RS05215 () | 1083757..1084278 | - | 522 | WP_139534928.1 | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | VF |
| D4I31_RS05220 () | 1084268..1085020 | - | 753 | WP_139534929.1 | sulfite exporter TauE/SafE family protein | - |
| D4I31_RS05225 () | 1085011..1085682 | - | 672 | WP_139534930.1 | type III pantothenate kinase | - |
| D4I31_RS05230 () | 1085687..1087303 | - | 1617 | WP_139534931.1 | plasminogen-binding protein PgbB | - |
| D4I31_RS05235 () | 1087308..1087964 | - | 657 | WP_078262805.1 | hypothetical protein | - |
| D4I31_RS05240 () | 1087961..1088398 | - | 438 | WP_139534932.1 | dUTP diphosphatase | - |
| D4I31_RS05245 () | 1088388..1088882 | - | 495 | WP_001031343.1 | transcription elongation factor GreA | - |
| D4I31_RS05250 () | 1088923..1090005 | - | 1083 | WP_139534933.1 | Lipid-A-disaccharide synthase | VF |
| D4I31_RS05255 () | 1090005..1090466 | - | 462 | WP_139534934.1 | hypothetical protein | - |
| D4I31_RS05260 () | 1090473..1090826 | - | 354 | WP_000545280.1 | hydrogenase/urease nickel incorporation protein HypA | - |
| D4I31_RS05265 () | 1090885..1093041 | - | 2157 | WP_000946398.1 | Flagellar hook protein FlgE | VF |
| D4I31_RS05270 () | 1093245..1094062 | - | 818 | Protein_1005 | CDP-diacylglycerol diphosphatase | - |
| D4I31_RS05275 () | 1094329..1094658 | + | 330 | WP_120808692.1 | alkylphosphonate utilization protein | - |
| D4I31_RS05280 () | 1094711..1094926 | - | 216 | WP_001206520.1 | hypothetical protein | - |
| D4I31_RS05285 () | 1095011..1095886 | - | 876 | WP_078269351.1 | twin-arginine translocation signal domain-containing protein | - |
| D4I31_RS05290 () | 1096031..1097548 | - | 1518 | WP_139534936.1 | Catalase | VF |
| D4I31_RS05295 () | 1097863..1100238 | + | 2376 | WP_139534937.1 | TonB-dependent receptor | - |
| D4I31_RS05300 () | 1100239..1100712 | - | 474 | WP_001221173.1 | crossover junction endodeoxyribonuclease RuvC | - |
| D4I31_RS05305 () | 1100844..1101575 | + | 732 | WP_000646774.1 | NYN domain-containing protein | - |
| D4I31_RS05315 () | 1102033..1102221 | - | 189 | Protein_1013 | hypothetical protein | - |
| D4I31_RS05320 () | 1102327..1102646 | - | 320 | Protein_1014 | hypothetical protein | - |
| D4I31_RS05325 () | 1102790..1103398 | - | 609 | WP_139534938.1 | DUF3519 domain-containing protein | - |
| D4I31_RS05330 () | 1103439..1103867 | + | 429 | WP_139534939.1 | hypothetical protein | - |
| D4I31_RS05335 () | 1103867..1105408 | + | 1542 | WP_139534940.1 | hypothetical protein | VF |
| D4I31_RS05340 () | 1105405..1106640 | + | 1236 | WP_139534941.1 | Type IV secretion system protein virB10 | VF |
| D4I31_RS05345 () | 1106710..1107003 | + | 294 | WP_120964966.1 | hypothetical protein | - |
| D4I31_RS05350 () | 1106996..1107259 | + | 264 | WP_139534942.1 | hypothetical protein | - |
| D4I31_RS05355 () | 1107256..1107555 | + | 300 | WP_000660136.1 | hypothetical protein | - |
| D4I31_RS05360 () | 1107555..1108442 | + | 888 | WP_025366525.1 | Type IV secretion system protein VirB11 | VF |
| D4I31_RS05365 () | 1108492..1108947 | + | 456 | WP_139534943.1 | mobilization protein | - |
| D4I31_RS05370 () | 1108944..1109234 | + | 291 | WP_000159810.1 | hypothetical protein | - |
| D4I31_RS05375 () | 1109235..1109792 | + | 558 | WP_139534944.1 | hypothetical protein | - |
| D4I31_RS05380 () | 1109793..1111520 | + | 1728 | WP_201738121.1 | Conjugal transfer protein TraG | VF |
| D4I31_RS05385 () | 1111792..1112073 | - | 282 | WP_033756152.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| D4I31_RS05390 () | 1112066..1112380 | - | 315 | WP_139534945.1 | hypothetical protein | Antitoxin Detail |
| D4I31_RS05395 () | 1112719..1114629 | + | 1911 | WP_139534946.1 | relaxase/mobilization nuclease domain-containing protein | - |
| D4I31_RS05400 () | 1114654..1115832 | - | 1179 | WP_139534947.1 | hypothetical protein | - |
| D4I31_RS05405 () | 1115876..1116160 | - | 285 | WP_000394655.1 | hypothetical protein ; Integrase | Integrase |
| D4I31_RS05410 () | 1116242..1116898 | - | 657 | WP_139534948.1 | ParA family protein | - |
| D4I31_RS05415 () | 1117164..1124492 | - | 7329 | WP_139534949.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| D4I31_RS05420 () | 1124646..1125029 | + | 384 | WP_139534950.1 | hypothetical protein | - |
| D4I31_RS05425 () | 1125081..1125683 | + | 603 | WP_073506071.1 | hypothetical protein | - |
| D4I31_RS05430 () | 1125684..1127089 | + | 1406 | Protein_1036 | hypothetical protein | - |
| D4I31_RS05435 () | 1127132..1128472 | + | 1341 | Protein_1037 | competence protein | - |
| D4I31_RS05445 () | 1129081..1129647 | - | 567 | Protein_1038 | hypothetical protein | - |
| D4I31_RS05450 () | 1129760..1131145 | + | 1386 | WP_139534952.1 | hypothetical protein | - |
| D4I31_RS05455 () | 1131145..1132347 | + | 1203 | WP_001917282.1 | hypothetical protein | - |
| D4I31_RS05460 () | 1132410..1133486 | - | 1077 | Protein_1041 | Tyrosine recombinase XerH ; Integrase | Integrase |
| D4I31_RS05465 () | 1133720..1134082 | - | 363 | Protein_1042 | hypothetical protein | - |
| D4I31_RS05470 () | 1134124..1134675 | - | 552 | WP_139534953.1 | Holliday junction branch migration protein RuvA | - |
| D4I31_RS05475 () | 1134701..1136545 | - | 1845 | WP_139534954.1 | DUF342 domain-containing protein | - |
| D4I31_RS05480 () | 1136638..1138098 | + | 1461 | WP_139534955.1 | murein biosynthesis integral membrane protein MurJ | - |
| D4I31_RS05485 () | 1138099..1139496 | + | 1398 | WP_139534956.1 | cysteine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|