MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 66568 bp
Accession: NZ_CP032905 Location: 530306..596873 Organism: Helicobacter pylori strain 26-A-EK1 Replicon: chromosome
Accession: NZ_CP032905 Location: 530306..596873 Organism: Helicobacter pylori strain 26-A-EK1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4J22_RS02705 () | 526012..527067 | - | 1056 | WP_139547021.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| D4J22_RS02710 () | 527104..529131 | - | 2028 | WP_139547022.1 | RNA degradosome polyphosphate kinase | - |
| D4J22_RS02725 () | 530246..530950 | + | 705 | Protein_514 | integrase | - |
| D4J22_RS02730 () | 531219..531740 | + | 522 | Protein_515 | hypothetical protein | VF |
| D4J22_RS02735 () | 532015..532296 | - | 282 | WP_000921933.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| D4J22_RS02740 () | 532289..532603 | - | 315 | WP_042636159.1 | hypothetical protein | Antitoxin Detail |
| D4J22_RS02745 () | 532943..534856 | + | 1914 | WP_139547023.1 | relaxase/mobilization nuclease domain-containing protein | - |
| D4J22_RS02750 () | 534876..536054 | - | 1179 | WP_139547024.1 | hypothetical protein | - |
| D4J22_RS02755 () | 536098..536382 | - | 285 | WP_000394655.1 | hypothetical protein ; Integrase | Integrase |
| D4J22_RS02760 () | 536465..537121 | - | 657 | WP_139547025.1 | ParA family protein | - |
| D4J22_RS02765 () | 537387..537644 | - | 258 | WP_139547026.1 | DNA methyltransferase | - |
| D4J22_RS02775 () | 537707..538153 | - | 447 | WP_201736855.1 | IS200-IS605 family transposase IS605 | Transposase |
| D4J22_RS02780 () | 538205..539500 | + | 1296 | WP_139546969.1 | IS200-IS605 family transposase IS605 | Transposase |
| D4J22_RS02785 () | 539507..540238 | + | 732 | Protein_525 | type IA DNA topoisomerase | - |
| D4J22_RS02790 () | 540293..540763 | + | 471 | WP_000965788.1 | hypothetical protein | - |
| D4J22_RS02795 () | 540733..541536 | + | 804 | WP_033590538.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| D4J22_RS02800 () | 541610..542275 | - | 666 | WP_139547027.1 | hypothetical protein | - |
| D4J22_RS02805 () | 542253..542630 | - | 378 | WP_139547643.1 | hypothetical protein | - |
| D4J22_RS02810 () | 542677..543345 | - | 669 | WP_139547028.1 | AAA family ATPase | - |
| D4J22_RS08280 () | 543983..544147 | + | 165 | WP_164864898.1 | hypothetical protein | - |
| D4J22_RS02820 () | 544148..545202 | + | 1055 | Protein_532 | DUF1738 domain-containing protein | - |
| D4J22_RS02825 () | 545202..547271 | + | 2070 | WP_139547029.1 | hypothetical protein | - |
| D4J22_RS02830 () | 547281..548714 | + | 1434 | WP_139547030.1 | hypothetical protein | - |
| D4J22_RS02835 () | 548711..549972 | + | 1262 | Protein_535 | P-type conjugative transfer protein TrbL | - |
| D4J22_RS02840 () | 549969..551246 | + | 1278 | WP_139547031.1 | hypothetical protein | - |
| D4J22_RS02845 () | 551251..552266 | - | 1016 | Protein_537 | hypothetical protein | - |
| D4J22_RS02850 () | 552466..552717 | + | 252 | WP_000006537.1 | hypothetical protein | - |
| D4J22_RS02855 () | 552689..553492 | + | 804 | WP_128057383.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| D4J22_RS02860 () | 553809..554661 | - | 853 | Protein_540 | Tyrosine recombinase XerH ; Integrase | Integrase |
| D4J22_RS02865 () | 554684..554878 | - | 195 | WP_033590528.1 | hypothetical protein | - |
| D4J22_RS02870 () | 556033..558066 | - | 2034 | WP_139547032.1 | relaxase/mobilization nuclease domain-containing protein | - |
| D4J22_RS02880 () | 558166..558612 | - | 447 | WP_201736855.1 | IS200-IS605 family transposase IS605 | Transposase |
| D4J22_RS02885 () | 558664..559959 | + | 1296 | WP_139546969.1 | IS200-IS605 family transposase IS605 | Transposase |
| D4J22_RS08285 () | 560944..562049 | + | 1106 | Protein_545 | DUF1887 family protein | - |
| D4J22_RS02895 () | 562089..562238 | + | 150 | WP_139547034.1 | type II restriction endonuclease | - |
| D4J22_RS08290 () | 562389..562599 | - | 211 | Protein_547 | hypothetical protein | - |
| D4J22_RS08295 () | 562691..562831 | - | 141 | WP_195742493.1 | hypothetical protein | - |
| D4J22_RS02905 () | 562884..563708 | - | 825 | WP_139547035.1 | mechanosensitive ion channel family protein | - |
| D4J22_RS02910 () | 563869..563989 | - | 121 | Protein_550 | modification methylase | - |
| D4J22_RS08225 () | 563979..564149 | - | 171 | WP_161594163.1 | hypothetical protein | - |
| D4J22_RS02915 () | 564563..565168 | - | 606 | Protein_552 | hypothetical protein | - |
| D4J22_RS02920 () | 565661..565933 | - | 273 | WP_139523370.1 | exonuclease VII large subunit | - |
| D4J22_RS02925 () | 565947..566246 | - | 300 | Protein_554 | Regulator of sigma-E protease RseP | VF |
| D4J22_RS02935 () | 567389..568546 | - | 1158 | WP_139547036.1 | cell division protein FtsZ | - |
| D4J22_RS02940 () | 568677..570170 | - | 1494 | WP_201736878.1 | cell division protein FtsA | - |
| D4J22_RS02945 () | 570170..571633 | - | 1464 | WP_139522659.1 | peptidylprolyl isomerase | - |
| D4J22_RS02950 () | 571763..573082 | + | 1320 | WP_139547038.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| D4J22_RS02955 () | 573192..573473 | - | 282 | WP_139547039.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| D4J22_RS02960 () | 573488..574963 | - | 1476 | WP_139547040.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| D4J22_RS02965 () | 574976..576052 | - | 1077 | WP_139547041.1 | hypothetical protein | - |
| D4J22_RS02970 () | 576165..578270 | + | 2106 | WP_139547042.1 | glycine--tRNA ligase subunit beta | - |
| D4J22_RS02975 () | 578260..579558 | + | 1299 | WP_201736879.1 | TolC family protein | - |
| D4J22_RS02980 () | 579555..580634 | + | 1080 | WP_120833465.1 | sodium:proton antiporter | - |
| D4J22_RS02985 () | 580634..583693 | + | 3060 | WP_201736893.1 | efflux RND transporter permease subunit | - |
| D4J22_RS02990 () | 583704..583985 | + | 282 | WP_000880304.1 | DUF3240 family protein | - |
| D4J22_RS02995 () | 584054..584341 | + | 288 | WP_139547044.1 | virulence factor | - |
| D4J22_RS03000 () | 584545..586194 | + | 1650 | WP_139547045.1 | dynamin-like GTPase family protein | - |
| D4J22_RS03005 () | 586196..588024 | + | 1829 | Protein_569 | dynamin-like GTPase family protein | - |
| D4J22_RS03020 () | 588030..588515 | + | 486 | WP_139547645.1 | hypothetical protein | - |
| D4J22_RS03025 () | 588512..590444 | + | 1933 | Protein_571 | dynamin-like GTPase family protein | - |
| D4J22_RS03030 () | 590758..591696 | + | 939 | WP_000401696.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| D4J22_RS03035 () | 591710..592621 | + | 912 | WP_139547047.1 | glycine--tRNA ligase subunit alpha | - |
| D4J22_RS03040 () | 592608..593339 | + | 732 | WP_139547048.1 | GTP cyclohydrolase I | - |
| D4J22_RS03045 () | 593349..594128 | + | 780 | WP_139547049.1 | zinc ribbon domain-containing protein | - |
| D4J22_RS03050 () | 594129..595310 | + | 1182 | WP_139547050.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| D4J22_RS03055 () | 595322..596050 | + | 729 | WP_139547051.1 | RluA family pseudouridine synthase | - |
| D4J22_RS03060 () | 596060..596914 | + | 855 | WP_139547052.1 | prolipoprotein diacylglyceryl transferase | - |
| D4J22_RS03065 () | 596911..597543 | + | 633 | WP_033621559.1 | NAD(P)H-dependent oxidoreductase | - |
| D4J22_RS03070 () | 597608..598174 | + | 567 | WP_139547053.1 | hypothetical protein | - |
| D4J22_RS03075 () | 598176..598832 | - | 657 | WP_139547054.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| D4J22_RS03080 () | 598843..599457 | - | 615 | WP_201736880.1 | recombination protein RecO | - |
| D4J22_RS03085 () | 599538..600407 | + | 870 | WP_000505041.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| D4J22_RS03090 () | 600421..600873 | + | 453 | WP_139547056.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|