MGE detailed information
MGE type: Prophage MGE length: 79931 bp
Accession: NZ_CP032631 Location: 5284945..5364875 Organism: Pseudomonas syringae pv. actinidiae str. Shaanxi_M228 Replicon: chromosome
Accession: NZ_CP032631 Location: 5284945..5364875 Organism: Pseudomonas syringae pv. actinidiae str. Shaanxi_M228 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CN228_RS25615 () | 5280210..5280644 | - | 435 | WP_003377473.1 | type II toxin-antitoxin system RatA family toxin | - |
| CN228_RS25620 () | 5280652..5282055 | - | 1404 | WP_007243715.1 | sodium-dependent transporter | - |
| CN228_RS25625 () | 5282169..5282651 | + | 483 | WP_003377471.1 | SsrA-binding protein SmpB | - |
| CN228_RS25630 () | 5282944..5283228 | + | 285 | WP_003377470.1 | hypothetical protein | - |
| CN228_RS25640 () | 5283943..5284419 | + | 477 | WP_017699800.1 | hypothetical protein | - |
| CN228_RS33445 () | 5284564..5284670 | + | 107 | Protein_4668 | transposase domain-containing protein | - |
| CN228_RS25650 () | 5284777..5284905 | - | 129 | Protein_4669 | LysE family translocator | - |
| CN228_RS25660 () | 5286833..5287336 | + | 504 | WP_017685081.1 | hypothetical protein | VF |
| CN228_RS25670 () | 5287757..5288206 | + | 450 | WP_017704941.1 | DUF1493 family protein | - |
| CN228_RS33175 () | 5288354..5288677 | - | 324 | WP_078983197.1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| CN228_RS25690 () | 5288694..5290226 | - | 1533 | WP_051120749.1 | IS66 family transposase ISPsy34 | Transposase |
| CN228_RS25695 () | 5290244..5290453 | - | 210 | WP_078983159.1 | IS66 family transposase ISPsy34 | Transposase |
| CN228_RS25700 () | 5290481..5291749 | - | 1269 | WP_017683608.1 | hypothetical protein | VF |
| CN228_RS25705 () | 5292156..5292461 | - | 306 | WP_074291269.1 | IS66 family transposase ISPsy34 | Transposase |
| CN228_RS25710 () | 5292537..5293586 | + | 1050 | WP_017683594.1 | hypothetical protein | VF |
| CN228_RS25715 () | 5293583..5294488 | + | 906 | WP_017683593.1 | dTDP-4-dehydrorhamnose reductase | - |
| CN228_RS25720 () | 5294497..5295378 | + | 882 | WP_005615131.1 | hypothetical protein | VF |
| CN228_RS25725 () | 5295644..5297551 | + | 1908 | WP_017703946.1 | hypothetical protein | - |
| CN228_RS25730 () | 5297627..5299549 | - | 1923 | WP_017683591.1 | hypothetical protein | - |
| CN228_RS25735 () | 5299578..5300879 | - | 1302 | WP_003382207.1 | hypothetical protein | VF |
| CN228_RS25740 () | 5300910..5301944 | - | 1035 | WP_005615114.1 | flippase-like domain-containing protein | - |
| CN228_RS25745 () | 5301925..5302692 | - | 768 | WP_003382214.1 | hypothetical protein | VF |
| CN228_RS25750 () | 5302702..5303664 | - | 963 | WP_003382215.1 | hypothetical protein | VF |
| CN228_RS25755 () | 5303691..5304506 | - | 816 | WP_017683590.1 | NAD-dependent epimerase/dehydratase family protein | - |
| CN228_RS25760 () | 5304503..5305585 | - | 1083 | WP_003382217.1 | hypothetical protein | VF |
| CN228_RS25765 () | 5305803..5308328 | - | 2526 | WP_017683589.1 | glycosyltransferase family 4 protein | - |
| CN228_RS25770 () | 5308328..5309875 | - | 1548 | WP_017683588.1 | class I SAM-dependent methyltransferase | - |
| CN228_RS25775 () | 5309872..5311089 | - | 1218 | WP_005736595.1 | hypothetical protein | VF |
| CN228_RS25780 () | 5311086..5311880 | - | 795 | WP_005615100.1 | ABC transporter permease | - |
| CN228_RS25785 () | 5312413..5313444 | + | 1032 | WP_003382222.1 | hypothetical protein | VF |
| CN228_RS25790 () | 5313444..5314340 | + | 897 | WP_017683587.1 | GDP-mannose 4,6-dehydratase | - |
| CN228_RS25795 () | 5314455..5315567 | + | 1113 | WP_003382224.1 | hypothetical protein | VF |
| CN228_RS25800 () | 5315633..5317690 | - | 2058 | WP_020365677.1 | hypothetical protein | VF |
| CN228_RS25805 () | 5318033..5319154 | + | 1122 | WP_017683585.1 | J domain-containing protein | - |
| CN228_RS25815 () | 5319514..5320755 | + | 1242 | WP_017705239.1 | hypothetical protein ; Integrase | Integrase |
| CN228_RS25820 () | 5321069..5321824 | - | 756 | WP_017683955.1 | IS21 family transposase ISPsy40 | Transposase |
| CN228_RS25825 () | 5321845..5323359 | - | 1515 | WP_017704020.1 | IS21 family transposase ISPsy40 | Transposase |
| CN228_RS25835 () | 5323782..5324849 | + | 1068 | WP_032685463.1 | IS630 family transposase ISPsy32 | Transposase |
| CN228_RS25845 () | 5325291..5326064 | + | 774 | Protein_4702 | DUF4238 domain-containing protein | - |
| CN228_RS25850 () | 5326668..5328186 | + | 1519 | Protein_4703 | IS21 family transposase | - |
| CN228_RS25855 () | 5328207..5328962 | + | 756 | WP_017699032.1 | IS21 family transposase ISPsy41 | Transposase |
| CN228_RS25860 () | 5329507..5330469 | + | 963 | WP_017704921.1 | HNH endonuclease | - |
| CN228_RS25865 () | 5330926..5331156 | + | 231 | WP_017684736.1 | hypothetical protein | - |
| CN228_RS25870 () | 5331172..5331735 | + | 564 | WP_017684735.1 | hypothetical protein ; Integrase | Integrase |
| CN228_RS25880 () | 5332418..5332861 | + | 444 | WP_017684732.1 | transcriptional regulator | - |
| CN228_RS32995 () | 5333011..5333226 | + | 216 | WP_020360176.1 | hypothetical protein | - |
| CN228_RS25885 () | 5333445..5335874 | - | 2430 | Protein_4710 | TonB-dependent siderophore receptor | - |
| CN228_RS25890 () | 5335996..5336934 | - | 939 | WP_017684729.1 | FecR domain-containing protein | - |
| CN228_RS25895 () | 5336938..5337447 | - | 510 | WP_003382231.1 | hypothetical protein | VF |
| CN228_RS25900 () | 5337797..5339416 | - | 1620 | WP_017684728.1 | hypothetical protein | VF |
| CN228_RS25910 () | 5341381..5341515 | + | 135 | Protein_4715 | aldo/keto reductase | - |
| CN228_RS25915 () | 5341545..5342612 | - | 1068 | WP_074556939.1 | IS630 family transposase ISPsy32 | Transposase |
| CN228_RS25920 () | 5342691..5343542 | + | 852 | Protein_4717 | aldo/keto reductase | - |
| CN228_RS25925 () | 5343539..5344129 | + | 591 | WP_017685061.1 | flavodoxin | - |
| CN228_RS25930 () | 5344154..5345146 | + | 993 | WP_017685060.1 | aldo/keto reductase | - |
| CN228_RS25935 () | 5345206..5345673 | + | 468 | WP_020304130.1 | cupin domain-containing protein | - |
| CN228_RS25940 () | 5345942..5347119 | + | 1178 | WP_164706461.1 | IS3 family transposase ISPsy28 | Transposase |
| CN228_RS25945 () | 5347276..5348106 | + | 831 | WP_017684104.1 | hypothetical protein | - |
| CN228_RS25950 () | 5348132..5349487 | - | 1356 | WP_074556941.1 | hypothetical protein ; Integrase | Integrase |
| CN228_RS25960 () | 5349728..5350795 | + | 1068 | WP_074556923.1 | IS630 family transposase ISPsy32 | Transposase |
| CN228_RS25970 () | 5351469..5352479 | - | 1011 | WP_024533178.1 | hypothetical protein ; Integrase | Integrase |
| CN228_RS25975 () | 5352607..5353382 | + | 776 | Protein_4726 | carboxymuconolactone decarboxylase family protein | - |
| CN228_RS25980 () | 5353507..5354451 | + | 945 | WP_017683362.1 | alpha/beta fold hydrolase | - |
| CN228_RS25985 () | 5354501..5355556 | + | 1056 | WP_017704224.1 | alpha/beta hydrolase | - |
| CN228_RS25990 () | 5355638..5356531 | + | 894 | WP_003382245.1 | hypothetical protein | VF |
| CN228_RS25995 () | 5356774..5357037 | + | 264 | WP_017683360.1 | hypothetical protein | - |
| CN228_RS26000 () | 5357165..5359045 | - | 1881 | WP_003382247.1 | hypothetical protein | VF |
| CN228_RS26005 () | 5359404..5361326 | + | 1923 | WP_017683359.1 | hypothetical protein | VF |
| CN228_RS26010 () | 5361491..5361757 | + | 267 | WP_003382249.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| CN228_RS26015 () | 5361757..5362032 | + | 276 | WP_017683357.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CN228_RS26030 () | 5362604..5363872 | + | 1269 | WP_007244158.1 | OprD family porin | - |
| CN228_RS26035 () | 5364051..5364875 | + | 825 | WP_003380380.1 | NAD(P)-dependent oxidoreductase | - |
| CN228_RS26040 () | 5364935..5365819 | + | 885 | WP_003380378.1 | SMP-30/gluconolactonase/LRE family protein | - |
| CN228_RS26045 () | 5365876..5366907 | + | 1032 | WP_020312848.1 | TRAP transporter substrate-binding protein | - |
| CN228_RS26050 () | 5366971..5367498 | + | 528 | WP_003380373.1 | TRAP transporter small permease | - |
| CN228_RS26055 () | 5367499..5368779 | + | 1281 | WP_003380372.1 | TRAP transporter large permease | - |
| CN228_RS26060 () | 5368863..5369833 | + | 971 | Protein_4741 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|