MGE detailed information
MGE type: Conjugative plasmid MGE length: 94537 bp
Accession: NZ_CP032524 Location: 1..94537 Organism: Shigella sonnei strain AR_0030 Replicon: plasmid unnamed1
Accession: NZ_CP032524 Location: 1..94537 Organism: Shigella sonnei strain AR_0030 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM357_RS26025 (283) | 283..792 | - | 510 | WP_000045395.1 | hypothetical protein | - |
| AM357_RS26030 (848) | 848..1450 | - | 603 | WP_000517687.1 | ProQ/FINO family protein | - |
| AM357_RS26040 (1803) | 1803..2378 | + | 576 | Protein_2 | protein YagA | - |
| AM357_RS26045 (2549) | 2549..3748 | - | 1200 | WP_000947184.1 | IS91 family transposase ISSbo1 | Transposase |
| AM357_RS26050 (3758) | 3758..3946 | - | 189 | WP_000957853.1 | hypothetical protein | - |
| AM357_RS27115 (4068) | 4068..4331 | + | 264 | Protein_5 | hypothetical protein | - |
| AM357_RS26065 (5590) | 5590..6105 | + | 516 | Protein_7 | protein YagA | - |
| AM357_RS26070 (6470) | 6470..7330 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| AM357_RS26075 (7513) | 7513..8070 | - | 558 | WP_119179397.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| AM357_RS26080 (8234) | 8234..11239 | + | 3006 | WP_134812219.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| AM357_RS27015 (11648) | 11648..11950 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| AM357_RS26095 (11947) | 11947..12573 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| AM357_RS26100 (12761) | 12761..14032 | - | 1272 | WP_045718936.1 | Y-family DNA polymerase | - |
| AM357_RS26105 (14032) | 14032..14469 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| AM357_RS26110 (14466) | 14466..14714 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| AM357_RS26120 (15108) | 15108..16034 | + | 927 | WP_001134370.1 | DUF1281 domain-containing protein | - |
| AM357_RS26125 (16031) | 16031..16342 | + | 312 | WP_001310011.1 | hypothetical protein | - |
| AM357_RS26130 (16419) | 16419..17102 | + | 684 | WP_000086153.1 | DNA methylase | - |
| AM357_RS26135 (17103) | 17103..17324 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| AM357_RS26140 (17338) | 17338..17772 | + | 435 | WP_119182767.1 | DUF1380 family protein | - |
| AM357_RS26145 (17817) | 17817..18587 | + | 771 | WP_134812220.1 | hypothetical protein | - |
| AM357_RS26160 (19003) | 19003..19428 | + | 426 | WP_001198900.1 | antirestriction protein | - |
| AM357_RS26165 (19475) | 19475..19897 | + | 423 | WP_119182757.1 | DUF1380 family protein | - |
| AM357_RS26170 (19894) | 19894..20085 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| AM357_RS26180 (20238) | 20238..20471 | + | 234 | WP_139288298.1 | hypothetical protein | - |
| AM357_RS26190 (20855) | 20855..21382 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| AM357_RS26195 (21440) | 21440..21673 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| AM357_RS26200 (21732) | 21732..23690 | + | 1959 | WP_119182750.1 | ParB/RepB/Spo0J family partition protein | - |
| AM357_RS26205 (23745) | 23745..24179 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| AM357_RS26210 (24176) | 24176..24895 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| AM357_RS26215 (24892) | 24892..25488 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| AM357_RS26225 (25950) | 25950..26450 | + | 501 | WP_000117630.1 | antirestriction protein ArdA | - |
| AM357_RS26235 (27182) | 27182..27616 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| AM357_RS26240 (27710) | 27710..27976 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| AM357_RS26245 (28153) | 28153..28542 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| AM357_RS26250 (28539) | 28539..29441 | + | 903 | WP_000038347.1 | Recombination-promoting nuclease RpnA | VF |
| AM357_RS26255 (29503) | 29503..29709 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| AM357_RS26260 (29740) | 29740..29991 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| AM357_RS26275 (30571) | 30571..31419 | + | 849 | WP_001077053.1 | DUF4942 domain-containing protein | - |
| AM357_RS26280 (31506) | 31506..31841 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| AM357_RS26285 (32075) | 32075..32407 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| AM357_RS26290 (32418) | 32418..35117 | + | 2700 | WP_024260454.1 | Protein TraI | Relaxase |
| AM357_RS26295 (35154) | 35154..37445 | - | 2292 | WP_001289278.1 | F-type conjugative transfer protein TrbC | - |
| AM357_RS26300 (37438) | 37438..38508 | - | 1071 | WP_000151588.1 | IncI1-type conjugal transfer protein TrbB | - |
| AM357_RS26305 (38527) | 38527..39735 | - | 1209 | WP_000121263.1 | hypothetical protein | VF |
| AM357_RS26310 (40042) | 40042..40821 | - | 780 | WP_275450201.1 | protein FinQ | - |
| - (41336) | 41336..41398 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (41336) | 41336..41398 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (41336) | 41336..41398 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (41336) | 41336..41398 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| AM357_RS26315 (41448) | 41448..41600 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| AM357_RS26320 (41672) | 41672..41923 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| AM357_RS27695 (42424) | 42424..42519 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| AM357_RS27020 (42584) | 42584..42760 | - | 177 | WP_001054898.1 | hypothetical protein | - |
| AM357_RS27025 (42757) | 42757..42900 | - | 144 | WP_001032823.1 | hypothetical protein | - |
| AM357_RS26330 (42943) | 42943..43152 | - | 210 | WP_001140543.1 | hemolysin expression modulator Hha | - |
| AM357_RS26335 (43250) | 43250..43864 | - | 615 | WP_000578648.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| AM357_RS26340 (43940) | 43940..46108 | - | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| AM357_RS26345 (46205) | 46205..46789 | - | 585 | WP_001037983.1 | IncI1-type conjugal transfer protein TraX | - |
| AM357_RS26350 (46818) | 46818..48020 | - | 1203 | WP_042004725.1 | IncI1-type conjugal transfer protein TraW | - |
| AM357_RS26355 (47987) | 47987..48601 | - | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| AM357_RS26360 (48601) | 48601..51645 | - | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| AM357_RS26365 (51735) | 51735..52535 | - | 801 | WP_001164783.1 | IncI1-type conjugal transfer protein TraT | - |
| AM357_RS26370 (52519) | 52519..52707 | - | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| AM357_RS26375 (52771) | 52771..53175 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| AM357_RS26380 (53226) | 53226..53753 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| AM357_RS26385 (53753) | 53753..54457 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| AM357_RS26390 (54457) | 54457..55746 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| AM357_RS26395 (55749) | 55749..56732 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| AM357_RS26400 (56743) | 56743..57435 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| AM357_RS26405 (57432) | 57432..57779 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| AM357_RS26410 (57797) | 57797..61561 | - | 3765 | WP_134812221.1 | DUF5710 domain-containing protein | - |
| AM357_RS26415 (61651) | 61651..62202 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| AM357_RS26420 (62217) | 62217..62507 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| AM357_RS26425 (62504) | 62504..63211 | - | 708 | Protein_71 | putative protein YggR | VF |
| AM357_RS26430 (63276) | 63276..64432 | + | 1157 | WP_087879964.1 | IS3 family transposase IS600 | Transposase |
| AM357_RS26435 (64476) | 64476..64919 | - | 444 | Protein_73 | plasmid transfer ATPase TraJ | - |
| AM357_RS26440 (64916) | 64916..65734 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| AM357_RS26445 (65731) | 65731..66189 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| AM357_RS26450 (66584) | 66584..67168 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| AM357_RS26455 (67228) | 67228..68430 | - | 1203 | WP_134812223.1 | conjugal transfer protein TraF | - |
| AM357_RS26460 (68516) | 68516..69340 | - | 825 | WP_134812224.1 | conjugal transfer protein TraE | - |
| AM357_RS26465 (69491) | 69491..70318 | - | 828 | Protein_79 | site-specific integrase | - |
| AM357_RS26470 (70385) | 70385..71334 | + | 950 | Protein_80 | IS3 family transposase ISSd1 | Transposase |
| AM357_RS26480 (72599) | 72599..72808 | + | 210 | Protein_82 | IS3 family transposase | - |
| AM357_RS26485 (72847) | 72847..73179 | - | 333 | Protein_83 | integrase | - |
| AM357_RS27030 (73178) | 73178..73585 | + | 408 | WP_003552681.1 | hypothetical protein | - |
| AM357_RS26505 (74079) | 74079..75407 | - | 1329 | WP_097477914.1 | hypothetical protein | VF |
| AM357_RS26510 (75407) | 75407..76063 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| AM357_RS26515 (76048) | 76048..76311 | - | 264 | Protein_87 | lytic transglycosylase domain-containing protein | - |
| AM357_RS26520 (76403) | 76403..77631 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| AM357_RS26525 (77642) | 77642..77944 | - | 303 | Protein_89 | hypothetical protein | VF |
| AM357_RS26530 (77954) | 77954..78568 | - | 615 | WP_000908227.1 | hypothetical protein | VF |
| AM357_RS26535 (78585) | 78585..79670 | - | 1086 | WP_119182756.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| AM357_RS26540 (79683) | 79683..81236 | - | 1554 | WP_001545756.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| AM357_RS26545 (81247) | 81247..81699 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| AM357_RS26550 (81686) | 81686..81862 | - | 177 | Protein_94 | type 4b pilus protein PilO2 | - |
| AM357_RS26555 (81927) | 81927..83083 | + | 1157 | WP_085948186.1 | IS3 family transposase ISSd1 | Transposase |
| AM357_RS26560 (83127) | 83127..84248 | - | 1122 | Protein_96 | type 4b pilus protein PilO2 | - |
| AM357_RS26565 (84241) | 84241..85923 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| AM357_RS26570 (85937) | 85937..86374 | - | 438 | WP_001545758.1 | hypothetical protein | VF |
| AM357_RS26575 (86374) | 86374..87441 | - | 1068 | WP_001545759.1 | hypothetical protein | VF |
| AM357_RS26585 (88413) | 88413..88679 | - | 267 | WP_001545761.1 | hypothetical protein | - |
| AM357_RS26595 (88940) | 88940..89194 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| AM357_RS26605 (89366) | 89366..90049 | - | 684 | WP_023196143.1 | conjugal transfer protein TraC | - |
| AM357_RS26615 (90303) | 90303..90836 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| AM357_RS26625 (91278) | 91278..91565 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| AM357_RS27580 (91603) | 91603..91761 | - | 159 | Protein_105 | ash family protein | - |
| AM357_RS26645 (92719) | 92719..93750 | + | 1032 | WP_000907866.1 | plasmid replication initiator RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|