MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 117719 bp
Accession: NZ_CP032471 Location: 1517875..1635593 Organism: Helicobacter pylori strain 479-C2-EK2 Replicon: chromosome
Accession: NZ_CP032471 Location: 1517875..1635593 Organism: Helicobacter pylori strain 479-C2-EK2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4L66_RS07340 () | 1513553..1515559 | + | 2007 | WP_139535574.1 | Hop family adhesin HopZ | - |
| D4L66_RS07370 () | 1516748..1517578 | - | 831 | WP_139518933.1 | pantoate--beta-alanine ligase | - |
| D4L66_RS07375 () | 1517579..1518262 | - | 684 | WP_139535575.1 | orotidine-5'-phosphate decarboxylase | - |
| D4L66_RS07380 () | 1518377..1519042 | + | 666 | WP_139518935.1 | carbonic anhydrase | - |
| D4L66_RS07385 () | 1519029..1519859 | + | 831 | WP_139518936.1 | 2-dehydro-3-deoxyphosphooctonate aldolase | VF |
| D4L66_RS07390 () | 1519869..1520339 | + | 471 | WP_001219991.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| D4L66_RS07395 () | 1520341..1520757 | + | 417 | WP_000235740.1 | transcription antitermination factor NusB | - |
| D4L66_RS07400 () | 1521064..1521825 | + | 762 | WP_000323682.1 | DUF3944 domain-containing protein | - |
| D4L66_RS07405 () | 1522587..1523551 | + | 965 | Protein_1394 | DUF3944 domain-containing protein | - |
| D4L66_RS07410 () | 1523574..1524362 | - | 789 | WP_064436148.1 | Flagellar basal-body rod protein FlgG | VF |
| D4L66_RS07415 () | 1524534..1525556 | - | 1023 | WP_139535576.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| D4L66_RS07420 () | 1525621..1526544 | - | 924 | WP_139518938.1 | 4-hydroxythreonine-4-phosphate dehydrogenase | VF |
| D4L66_RS07425 () | 1526546..1527334 | - | 789 | WP_139518939.1 | Pyridoxine 5'-phosphate synthase | VF |
| D4L66_RS07430 () | 1527471..1528481 | + | 1011 | WP_139535577.1 | glycosyltransferase family 4 protein | - |
| D4L66_RS07435 () | 1528478..1529074 | + | 597 | WP_180339200.1 | lipid A 4'-phosphatase | - |
| D4L66_RS07440 () | 1529084..1529512 | + | 429 | WP_139518942.1 | hypothetical protein | - |
| D4L66_RS07445 () | 1529561..1530679 | + | 1119 | WP_139518943.1 | glycosyltransferase family 8 protein | - |
| D4L66_RS07450 () | 1530711..1531358 | - | 648 | WP_000625450.1 | ABC transporter permease | - |
| D4L66_RS07455 () | 1531360..1532343 | - | 984 | WP_139518944.1 | Methionine import ATP-binding protein MetN | VF |
| D4L66_RS07460 () | 1532365..1532637 | - | 273 | WP_001044060.1 | Flagellar biosynthetic protein FlhB | VF |
| D4L66_RS07465 () | 1532638..1533258 | - | 621 | WP_139518945.1 | riboflavin synthase | - |
| D4L66_RS07470 () | 1533333..1534097 | + | 765 | WP_120898788.1 | TatD family hydrolase | - |
| D4L66_RS07475 () | 1534186..1535304 | + | 1119 | WP_139535578.1 | lytic transglycosylase domain-containing protein | - |
| D4L66_RS07480 () | 1535304..1536248 | + | 945 | WP_139535579.1 | septal ring lytic transglycosylase RlpA family protein | - |
| D4L66_RS07485 () | 1536245..1536739 | + | 495 | WP_139535580.1 | HAD family hydrolase | - |
| D4L66_RS07490 () | 1536714..1537307 | + | 594 | WP_139535581.1 | hypothetical protein | - |
| D4L66_RS07495 () | 1537307..1537864 | + | 558 | WP_139518949.1 | lipopolysaccharide transport periplasmic protein LptA | - |
| D4L66_RS07500 () | 1537861..1538487 | + | 627 | WP_139518950.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| D4L66_RS07505 () | 1538500..1538943 | + | 444 | WP_000949829.1 | hypothetical protein | - |
| D4L66_RS07510 () | 1538924..1540690 | + | 1767 | WP_139518951.1 | penicillin-binding protein 2 | - |
| D4L66_RS07515 () | 1541182..1541997 | - | 816 | WP_000990975.1 | D-methionine-binding lipoprotein MetQ | VF |
| D4L66_RS07520 () | 1542144..1542740 | - | 597 | WP_000961672.1 | peroxiredoxin | - |
| D4L66_RS07525 () | 1542979..1543980 | + | 1002 | WP_139518952.1 | ABC transporter substrate-binding protein | - |
| D4L66_RS07530 () | 1544004..1545170 | - | 1167 | WP_139518953.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| D4L66_RS07540 () | 1545302..1545796 | + | 495 | WP_180339201.1 | Flagellar basal body rod protein FlgB | VF |
| D4L66_RS07545 () | 1545809..1546294 | + | 486 | WP_000480077.1 | Flagellar basal-body rod protein FlgC | VF |
| D4L66_RS07550 () | 1546422..1546751 | + | 330 | WP_001147916.1 | Flagellar hook-basal body complex protein FliE | VF |
| D4L66_RS08040 () | 1546775..1546900 | + | 126 | WP_139518954.1 | transcriptional regulator | - |
| D4L66_RS07560 () | 1546907..1548754 | + | 1848 | WP_139518955.1 | penicillin-binding protein 2 | - |
| D4L66_RS07565 () | 1548884..1549931 | + | 1048 | Protein_1425 | ATP/GTP-binding protein | - |
| D4L66_RS07570 () | 1549931..1550613 | + | 683 | Protein_1426 | hypothetical protein | - |
| D4L66_RS07575 () | 1550789..1551646 | - | 858 | WP_079363141.1 | cytochrome c1 | - |
| D4L66_RS07580 () | 1551643..1552881 | - | 1239 | WP_139518956.1 | cytochrome bc complex cytochrome b subunit | - |
| D4L66_RS07585 () | 1552892..1553395 | - | 504 | WP_000763640.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| D4L66_RS07590 () | 1553519..1556518 | - | 3000 | WP_139518957.1 | transcription-repair coupling factor | - |
| D4L66_RS07595 () | 1556522..1556932 | - | 411 | WP_000963936.1 | polymer-forming cytoskeletal protein | - |
| D4L66_RS07600 () | 1556851..1557789 | - | 939 | WP_139535582.1 | Murein DD-endopeptidase MepM | VF |
| D4L66_RS07605 () | 1557798..1558724 | - | 927 | WP_139518959.1 | M23 family metallopeptidase | - |
| D4L66_RS07610 () | 1558724..1559908 | - | 1185 | WP_139518960.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| D4L66_RS07615 () | 1559898..1560410 | - | 513 | WP_139518961.1 | hypothetical protein | - |
| D4L66_RS07620 () | 1560407..1562827 | - | 2421 | WP_139523775.1 | leucine--tRNA ligase | - |
| D4L66_RS07625 () | 1562837..1563175 | - | 339 | WP_000383774.1 | hypothetical protein | - |
| D4L66_RS07630 () | 1563185..1564156 | - | 972 | WP_139518963.1 | protein translocase subunit SecF | - |
| D4L66_RS07635 () | 1564165..1565742 | - | 1578 | WP_139518964.1 | protein translocase subunit SecD | - |
| D4L66_RS07640 () | 1565739..1566122 | - | 384 | WP_000529767.1 | preprotein translocase subunit YajC | - |
| D4L66_RS07645 () | 1566170..1567486 | - | 1317 | WP_139518965.1 | sodium/proton antiporter NhaA | - |
| D4L66_RS07650 () | 1567510..1570347 | - | 2838 | WP_139518966.1 | RecB-like helicase | - |
| D4L66_RS07655 () | 1570596..1571390 | + | 795 | WP_000258276.1 | 30S ribosomal protein S2 | - |
| D4L66_RS07660 () | 1571390..1572457 | + | 1068 | WP_139523777.1 | elongation factor Ts | - |
| D4L66_RS07665 () | 1572607..1573338 | - | 732 | WP_139518968.1 | type II restriction endonuclease | - |
| D4L66_RS07670 () | 1573331..1574227 | - | 897 | WP_139518969.1 | SAM-dependent methyltransferase | - |
| D4L66_RS07675 () | 1574240..1574443 | - | 204 | WP_162982575.1 | hypothetical protein | - |
| D4L66_RS07680 () | 1574443..1575315 | - | 873 | WP_139518970.1 | class 1 fructose-bisphosphatase | - |
| D4L66_RS07685 () | 1575386..1576039 | + | 654 | WP_139518971.1 | Ribulose-phosphate 3-epimerase | VF |
| D4L66_RS07690 () | 1576017..1576880 | + | 864 | WP_139518972.1 | 3'-5' exonuclease | - |
| D4L66_RS07695 () | 1577126..1577482 | - | 357 | WP_000963134.1 | hypothetical protein | - |
| D4L66_RS07700 () | 1577612..1577908 | - | 297 | WP_078260935.1 | hypothetical protein | - |
| D4L66_RS07705 () | 1577927..1579234 | - | 1308 | WP_139518973.1 | putative protein YloA | VF |
| D4L66_RS07710 () | 1579231..1580805 | - | 1575 | WP_139518974.1 | DNA repair protein RecN | - |
| D4L66_RS07715 () | 1580820..1581674 | - | 855 | WP_139518975.1 | NAD(+)/NADH kinase | - |
| D4L66_RS07720 () | 1581860..1582588 | + | 729 | WP_139518976.1 | hypothetical protein | VF |
| D4L66_RS07725 () | 1582599..1584350 | - | 1752 | WP_139518977.1 | DUF262 domain-containing HNH endonuclease family protein | - |
| D4L66_RS07730 () | 1584471..1585613 | - | 1143 | WP_139535583.1 | alanine dehydrogenase | - |
| D4L66_RS07735 () | 1585817..1586785 | + | 969 | WP_139523778.1 | arginase | - |
| D4L66_RS07740 () | 1587135..1589660 | + | 2526 | WP_180339202.1 | TonB-dependent receptor family protein | - |
| D4L66_RS07745 () | 1589750..1590457 | - | 708 | WP_139518981.1 | M48 family metallopeptidase | - |
| D4L66_RS07750 () | 1590457..1592217 | - | 1761 | WP_139518982.1 | type I restriction endonuclease subunit R | - |
| D4L66_RS07760 () | 1592403..1592654 | + | 252 | WP_139518983.1 | hypothetical protein | - |
| D4L66_RS07765 () | 1592705..1593106 | + | 402 | WP_000420189.1 | hypothetical protein | - |
| D4L66_RS07770 () | 1593119..1595179 | + | 2061 | WP_139518984.1 | type IA DNA topoisomerase | - |
| D4L66_RS07775 () | 1595234..1595704 | + | 471 | WP_000965788.1 | hypothetical protein | - |
| D4L66_RS07780 () | 1595674..1596472 | + | 799 | Protein_1467 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| D4L66_RS07785 () | 1596546..1597067 | - | 522 | WP_139518985.1 | hypothetical protein | - |
| D4L66_RS07790 () | 1597196..1597573 | - | 378 | WP_120963166.1 | hypothetical protein | - |
| D4L66_RS07795 () | 1597620..1598288 | - | 669 | WP_000150803.1 | ParA family protein | - |
| D4L66_RS08045 () | 1598925..1599089 | + | 165 | WP_000189763.1 | hypothetical protein | - |
| D4L66_RS07805 () | 1599090..1599590 | + | 501 | WP_139518988.1 | DUF1738 domain-containing protein | - |
| D4L66_RS07810 () | 1599912..1600142 | + | 231 | WP_139519046.1 | hypothetical protein | - |
| D4L66_RS07815 () | 1600142..1602070 | + | 1929 | Protein_1474 | hypothetical protein | - |
| D4L66_RS07820 () | 1602080..1603513 | + | 1434 | WP_139518989.1 | hypothetical protein | - |
| D4L66_RS07825 () | 1603510..1604772 | + | 1263 | Protein_1476 | P-type conjugative transfer protein TrbL | - |
| D4L66_RS07830 () | 1604769..1606046 | + | 1278 | WP_139518990.1 | hypothetical protein | - |
| D4L66_RS07835 () | 1606051..1606680 | - | 630 | WP_139519047.1 | hypothetical protein | - |
| D4L66_RS07840 () | 1606786..1607069 | - | 284 | Protein_1479 | hypothetical protein | - |
| D4L66_RS07845 () | 1607290..1607769 | + | 480 | WP_139518991.1 | CAAX protease | - |
| D4L66_RS07855 () | 1608129..1608380 | + | 252 | WP_139518992.1 | hypothetical protein | - |
| D4L66_RS07860 () | 1608352..1609155 | + | 804 | WP_000009099.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| D4L66_RS07865 () | 1609289..1610365 | + | 1077 | WP_139518993.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| D4L66_RS07870 () | 1610428..1611630 | - | 1203 | WP_139518994.1 | hypothetical protein | - |
| D4L66_RS07875 () | 1611630..1613003 | - | 1374 | WP_139518995.1 | hypothetical protein | - |
| D4L66_RS07880 () | 1613007..1615220 | - | 2214 | WP_139518996.1 | competence protein | - |
| D4L66_RS07885 () | 1615263..1616657 | - | 1395 | WP_139518997.1 | hypothetical protein | - |
| D4L66_RS07890 () | 1616658..1617695 | - | 1038 | WP_139518998.1 | hypothetical protein | - |
| D4L66_RS07895 () | 1617849..1626305 | + | 8457 | WP_139518999.1 | DEAD/DEAH box helicase family protein | - |
| D4L66_RS07900 () | 1626572..1627228 | + | 657 | WP_000587377.1 | ParA family protein | - |
| D4L66_RS07905 () | 1627309..1627593 | + | 285 | WP_079296630.1 | hypothetical protein | - |
| D4L66_RS07910 () | 1627637..1628821 | + | 1185 | WP_139519000.1 | hypothetical protein | - |
| D4L66_RS07915 () | 1628846..1630756 | - | 1911 | WP_139519001.1 | relaxase/mobilization nuclease domain-containing protein | - |
| D4L66_RS07920 () | 1631050..1631364 | + | 315 | WP_139519002.1 | hypothetical protein | Antitoxin Detail |
| D4L66_RS07925 () | 1631357..1631638 | + | 282 | WP_000921926.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| D4L66_RS07930 () | 1631913..1633640 | - | 1728 | WP_180339203.1 | Protein VirD4 | VF |
| D4L66_RS07935 () | 1633641..1634198 | - | 558 | WP_139519003.1 | hypothetical protein | - |
| D4L66_RS07940 () | 1634365..1634991 | - | 627 | WP_000451922.1 | FAD-dependent thymidylate synthase | - |
| D4L66_RS07945 () | 1635013..1636806 | - | 1794 | WP_139519004.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| D4L66_RS07950 () | 1636807..1637046 | - | 240 | WP_000461845.1 | DUF2443 domain-containing protein | - |
| D4L66_RS07955 () | 1637089..1637631 | - | 543 | WP_139519049.1 | purine-nucleoside phosphorylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|