MGE detailed information
MGE type: Conjugative plasmid MGE length: 73281 bp
Accession: NZ_CP032458 Location: 1..73281 Organism: Pseudomonas savastanoi strain CAS03 Replicon: plasmid unnamed2
Accession: NZ_CP032458 Location: 1..73281 Organism: Pseudomonas savastanoi strain CAS03 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5S10_RS28175 () | 324..963 | - | 640 | Protein_1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| D5S10_RS28180 () | 1326..3378 | - | 2053 | Protein_2 | DotA/TraY family protein | - |
| D5S10_RS28185 () | 3462..4684 | + | 1223 | WP_192485871.1 | IS3 family transposase IS51 | Transposase |
| D5S10_RS28190 () | 5628..6131 | + | 504 | WP_057403957.1 | type VI secretion system tube protein Hcp | - |
| D5S10_RS28195 () | 6574..6999 | + | 426 | WP_192485872.1 | DUF1493 family protein | - |
| D5S10_RS28200 () | 7493..8671 | - | 1179 | WP_192485873.1 | hypothetical protein | - |
| D5S10_RS28210 () | 10741..11400 | - | 660 | WP_122322412.1 | avirulence protein AvrXv3 | - |
| D5S10_RS28215 () | 11544..11924 | + | 381 | Protein_9 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| D5S10_RS28220 () | 11957..12199 | - | 243 | Protein_10 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| D5S10_RS28225 () | 12677..13621 | + | 945 | WP_019332192.1 | hypothetical protein | - |
| D5S10_RS28230 () | 13808..14101 | + | 294 | WP_192485874.1 | hypothetical protein | - |
| D5S10_RS28235 () | 14479..15009 | - | 531 | WP_005752338.1 | hypothetical protein | - |
| D5S10_RS28240 () | 15609..16430 | - | 822 | WP_005760351.1 | C58 family peptidase | - |
| D5S10_RS28245 () | 16600..17034 | - | 435 | WP_192485890.1 | hypothetical protein | - |
| D5S10_RS28250 () | 17204..17860 | + | 657 | WP_038819590.1 | AAA family ATPase | - |
| D5S10_RS28255 () | 17946..18197 | + | 252 | WP_053486304.1 | ribbon-helix-helix protein, CopG family | - |
| D5S10_RS28260 () | 18640..19938 | - | 1299 | WP_192485875.1 | Y-family DNA polymerase | - |
| D5S10_RS28265 () | 19916..20341 | - | 426 | WP_053486219.1 | S24 family peptidase | - |
| D5S10_RS28270 () | 20480..21793 | - | 1314 | WP_192485876.1 | replication initiation protein | - |
| D5S10_RS28275 () | 22191..22418 | - | 228 | WP_192485877.1 | hypothetical protein | - |
| D5S10_RS28280 () | 22435..23337 | - | 903 | WP_192485878.1 | hypothetical protein | - |
| D5S10_RS28285 () | 23691..24119 | - | 429 | WP_096059926.1 | winged helix-turn-helix domain-containing protein | - |
| D5S10_RS28290 () | 24259..24396 | - | 138 | WP_005746136.1 | hypothetical protein | - |
| D5S10_RS28295 () | 24474..24731 | - | 258 | WP_004666672.1 | Major pilu subunit operon regulatory protein PapB | VF |
| D5S10_RS28300 () | 24851..28624 | - | 3774 | WP_192485879.1 | hypothetical protein | Relaxase |
| D5S10_RS28305 () | 28614..29339 | - | 726 | WP_192485880.1 | relaxosome protein | - |
| D5S10_RS28310 () | 29716..30105 | + | 390 | WP_192485881.1 | hypothetical protein | - |
| D5S10_RS28315 () | 30138..30776 | - | 639 | WP_192485882.1 | hypothetical protein | - |
| D5S10_RS28320 () | 30785..31639 | - | 855 | WP_050543860.1 | conjugal transfer protein, TraL family | - |
| D5S10_RS28325 () | 31826..32089 | - | 264 | WP_192485883.1 | hypothetical protein | - |
| D5S10_RS28330 () | 32130..32723 | - | 594 | WP_192485884.1 | single-stranded DNA-binding protein | - |
| D5S10_RS28335 () | 32751..33035 | - | 285 | WP_192485885.1 | hypothetical protein | - |
| D5S10_RS28340 () | 33062..35227 | - | 2166 | WP_192485886.1 | type IA DNA topoisomerase | - |
| D5S10_RS28345 () | 35255..35617 | - | 363 | WP_192485887.1 | killer protein | - |
| D5S10_RS28350 () | 35656..37338 | - | 1683 | WP_192485888.1 | type IV secretory system conjugative DNA transfer family protein | - |
| D5S10_RS28355 () | 37338..37571 | - | 234 | WP_122235775.1 | hypothetical protein | - |
| D5S10_RS28360 () | 37687..37965 | - | 279 | WP_054999478.1 | hypothetical protein | - |
| D5S10_RS28365 () | 37954..38952 | - | 999 | Protein_39 | hypothetical protein | - |
| D5S10_RS28370 () | 38988..39188 | - | 201 | WP_031598826.1 | hypothetical protein | VF |
| D5S10_RS28375 () | 39188..39421 | - | 234 | WP_057421666.1 | hypothetical protein | - |
| D5S10_RS28380 () | 39541..39807 | - | 267 | WP_007253348.1 | hypothetical protein | - |
| D5S10_RS28385 () | 39804..40094 | - | 291 | WP_192485852.1 | hypothetical protein | - |
| D5S10_RS28390 () | 40169..40534 | - | 366 | WP_192485853.1 | hypothetical protein | - |
| D5S10_RS28395 () | 40519..40905 | - | 387 | WP_096135805.1 | hypothetical protein | - |
| D5S10_RS28400 () | 40919..41974 | - | 1056 | WP_192485854.1 | Type IV secretion system protein VirB11 | VF |
| D5S10_RS28405 () | 41984..43333 | - | 1350 | WP_192485855.1 | Type IV secretion system protein virB10 | VF |
| D5S10_RS28410 () | 43320..44129 | - | 810 | WP_192485856.1 | P-type conjugative transfer protein VirB9 | - |
| D5S10_RS28415 () | 44119..44907 | - | 789 | WP_192485857.1 | Type IV secretion system protein virB8 | VF |
| D5S10_RS28420 () | 44945..45250 | - | 306 | WP_080395837.1 | conjugal transfer protein | - |
| D5S10_RS28425 () | 45319..46263 | - | 945 | WP_192485858.1 | type IV secretion system protein | - |
| D5S10_RS28430 () | 46290..46496 | - | 207 | WP_192485859.1 | hypothetical protein | - |
| D5S10_RS28435 () | 46511..47191 | - | 681 | WP_192485860.1 | P-type DNA transfer protein VirB5 | - |
| D5S10_RS28440 () | 47188..49740 | - | 2553 | WP_192485861.1 | conjugal transfer protein | - |
| D5S10_RS28445 () | 49676..50077 | - | 402 | Protein_55 | VirB3 family type IV secretion system protein | - |
| D5S10_RS28450 () | 50090..50425 | - | 336 | WP_192485889.1 | conjugal transfer protein | - |
| D5S10_RS28455 () | 50425..51132 | - | 708 | WP_192485862.1 | Type IV secretion system protein virB1 | VF |
| D5S10_RS28460 () | 51161..51376 | - | 216 | WP_004666691.1 | hypothetical protein | - |
| D5S10_RS28465 () | 51441..51968 | - | 528 | WP_192485863.1 | transcriptional regulator | - |
| D5S10_RS28470 () | 52232..52582 | + | 351 | WP_004666693.1 | helix-turn-helix transcriptional regulator | - |
| D5S10_RS28475 () | 52670..53140 | + | 471 | WP_192485864.1 | bacteriocin immunity protein | - |
| D5S10_RS28480 () | 53386..53766 | + | 381 | WP_074929343.1 | hypothetical protein | - |
| D5S10_RS28485 () | 54301..54555 | - | 255 | WP_003381801.1 | hypothetical protein | - |
| D5S10_RS28490 () | 54591..55223 | - | 633 | WP_003381804.1 | ParA family protein | - |
| D5S10_RS28495 () | 55546..56181 | + | 636 | WP_054995158.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| D5S10_RS28500 () | 56359..56547 | + | 189 | WP_002556028.1 | hypothetical protein | Antitoxin Detail |
| D5S10_RS28505 () | 56547..56828 | + | 282 | WP_002556029.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D5S10_RS28510 () | 56980..58527 | - | 1548 | WP_054076397.1 | glycoside hydrolase family 28 protein | - |
| D5S10_RS28515 () | 58611..58834 | - | 224 | Protein_69 | carbon storage regulator | - |
| D5S10_RS28520 () | 59403..59673 | + | 271 | Protein_70 | IS3 family transposase IS51 | Transposase |
| D5S10_RS28525 () | 59807..60787 | - | 981 | WP_054078085.1 | IS5 family transposase ISPsy2 | Transposase |
| D5S10_RS28530 () | 60861..61361 | + | 501 | WP_019740153.1 | Protein hcp1 | VF |
| D5S10_RS28535 () | 61385..61912 | + | 528 | WP_005747600.1 | DUF2778 domain-containing protein | - |
| D5S10_RS28545 () | 63927..64208 | + | 282 | WP_192485865.1 | hypothetical protein | - |
| D5S10_RS28550 () | 64189..65418 | + | 1230 | WP_192485866.1 | IS91 family transposase IS801 | Transposase |
| D5S10_RS28555 () | 65596..65841 | - | 246 | Protein_77 | HU family DNA-binding protein | - |
| D5S10_RS28560 () | 66092..67378 | - | 1287 | WP_192485867.1 | replication initiation protein | - |
| D5S10_RS28565 () | 67788..68216 | - | 429 | WP_011107000.1 | GntR family transcriptional regulator | - |
| D5S10_RS28570 () | 68295..70583 | - | 2289 | WP_192485868.1 | type IV secretory system conjugative DNA transfer family protein | - |
| D5S10_RS28575 () | 70570..71655 | - | 1086 | WP_192485869.1 | thioredoxin fold domain-containing protein | - |
| D5S10_RS28580 () | 71747..71947 | + | 201 | WP_004644067.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| D5S10_RS28585 () | 71944..72321 | + | 378 | WP_003344395.1 | PIN domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|