MGE detailed information
MGE type: Conjugative plasmid MGE length: 132551 bp
Accession: NZ_CP032414 Location: 1..132551 Organism: Shewanella algae strain VGH117 Replicon: plasmid unnamed
Accession: NZ_CP032414 Location: 1..132551 Organism: Shewanella algae strain VGH117 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3X10_RS00005 (D3X10_00005) | 1..1200 | + | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
| D3X10_RS00010 (D3X10_00010) | 1167..1355 | - | 189 | Protein_1 | IS91 family transposase | - |
| D3X10_RS00015 (D3X10_00015) | 1467..1772 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| D3X10_RS00020 (D3X10_00020) | 1800..3014 | - | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| D3X10_RS00025 (D3X10_00025) | 3231..4115 | - | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| D3X10_RS00030 (D3X10_00030) | 4146..5639 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| D3X10_RS00035 (D3X10_00035) | 5850..6074 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| D3X10_RS00040 (D3X10_00040) | 6071..6808 | - | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| D3X10_RS00045 | 7294..7434 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| D3X10_RS00050 (D3X10_00050) | 7440..8144 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| D3X10_RS00055 (D3X10_00055) | 8451..8630 | + | 180 | Protein_10 | helix-turn-helix domain-containing protein | - |
| D3X10_RS00060 (D3X10_00060) | 8695..9399 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| D3X10_RS00065 (D3X10_00065) | 9614..10111 | - | 498 | WP_000062185.1 | hypothetical protein | - |
| D3X10_RS00070 (D3X10_00070) | 10114..10602 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| D3X10_RS00075 (D3X10_00075) | 10699..11034 | + | 336 | WP_000683476.1 | hypothetical protein | - |
| D3X10_RS00080 (D3X10_00080) | 11049..11519 | - | 471 | WP_001281821.1 | hypothetical protein | - |
| D3X10_RS00085 (D3X10_00085) | 11512..11883 | - | 372 | WP_000516916.1 | hypothetical protein | - |
| D3X10_RS00090 (D3X10_00090) | 11894..12088 | - | 195 | WP_000343597.1 | hypothetical protein | - |
| D3X10_RS00095 (D3X10_00100) | 12429..12977 | - | 549 | WP_001061574.1 | transcriptional regulator | - |
| D3X10_RS00100 (D3X10_00105) | 13140..13490 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D3X10_RS00105 (D3X10_00110) | 13495..13797 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| D3X10_RS00110 (D3X10_00115) | 13824..14117 | - | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| D3X10_RS00115 (D3X10_00120) | 14205..14477 | - | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| D3X10_RS00120 (D3X10_00125) | 14535..15062 | - | 528 | WP_001236377.1 | thermonuclease family protein | - |
| D3X10_RS00125 (D3X10_00135) | 15293..16150 | - | 858 | WP_001167032.1 | hypothetical protein | - |
| D3X10_RS00130 (D3X10_00140) | 16137..16367 | - | 231 | WP_000972663.1 | hypothetical protein | - |
| D3X10_RS00135 (D3X10_00145) | 16367..16885 | - | 519 | WP_000210756.1 | nitrite reductase | - |
| D3X10_RS00140 (D3X10_00150) | 16882..17328 | - | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| D3X10_RS00145 (D3X10_00155) | 17328..17687 | - | 360 | WP_000422768.1 | hypothetical protein | - |
| D3X10_RS00150 (D3X10_00160) | 17744..18172 | - | 429 | WP_000591074.1 | hypothetical protein | - |
| D3X10_RS00155 (D3X10_00165) | 18206..19066 | - | 861 | WP_000139698.1 | DsbA family protein | - |
| D3X10_RS00160 (D3X10_00170) | 19082..20041 | - | 960 | WP_000829616.1 | S49 family peptidase | - |
| D3X10_RS00165 (D3X10_00175) | 20041..20895 | - | 855 | WP_000539392.1 | hypothetical protein | - |
| D3X10_RS00170 (D3X10_00180) | 20900..21193 | - | 294 | WP_001370730.1 | hypothetical protein | - |
| D3X10_RS00175 (D3X10_00185) | 21204..21677 | - | 474 | WP_000057877.1 | hypothetical protein | - |
| D3X10_RS00180 (D3X10_00190) | 21774..22295 | - | 522 | WP_000805800.1 | hypothetical protein | - |
| D3X10_RS00185 (D3X10_00195) | 22298..22819 | - | 522 | WP_000393785.1 | hypothetical protein | - |
| D3X10_RS00190 (D3X10_00200) | 22824..23432 | - | 609 | WP_000849071.1 | hypothetical protein | - |
| D3X10_RS00195 (D3X10_00205) | 23701..24816 | + | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| D3X10_RS00200 (D3X10_00210) | 24834..25268 | + | 435 | WP_000883925.1 | hypothetical protein | - |
| D3X10_RS00205 (D3X10_00225) | 26304..27404 | - | 1101 | WP_000350011.1 | RepB family plasmid replication initiator protein | - |
| D3X10_RS00210 (D3X10_00230) | 27389..27676 | - | 288 | WP_000127321.1 | hypothetical protein | - |
| D3X10_RS00215 (D3X10_00235) | 27681..28220 | - | 540 | WP_001447712.1 | conjugative transfer protein MobI(A/C) | - |
| D3X10_RS00220 (D3X10_00240) | 28719..29702 | + | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| D3X10_RS00225 (D3X10_00245) | 29719..30012 | + | 294 | WP_000919078.1 | hypothetical protein | - |
| D3X10_RS00230 (D3X10_00250) | 30014..30433 | + | 420 | WP_000651490.1 | H-NS family nucleoid-associated regulatory protein | - |
| D3X10_RS00235 (D3X10_00255) | 30493..31044 | - | 552 | WP_001020646.1 | FlhC family transcriptional regulator | - |
| D3X10_RS00240 (D3X10_00260) | 31041..31649 | - | 609 | WP_000891157.1 | hypothetical protein | - |
| D3X10_RS00245 (D3X10_00265) | 31660..32193 | - | 534 | WP_032064504.1 | transglycosylase SLT domain-containing protein | - |
| D3X10_RS00250 (D3X10_00270) | 32193..32465 | - | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| D3X10_RS00255 (D3X10_00275) | 33181..33543 | + | 363 | WP_000683483.1 | hypothetical protein | - |
| D3X10_RS00260 (D3X10_00280) | 33581..37195 | - | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| D3X10_RS00265 (D3X10_00285) | 37208..38641 | - | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| D3X10_RS00270 (D3X10_00290) | 38643..39683 | - | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| D3X10_RS00275 (D3X10_00295) | 39794..41305 | - | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| D3X10_RS00280 (D3X10_00305) | 41592..42632 | - | 1041 | WP_000101568.1 | DNA-binding protein | - |
| D3X10_RS00285 (D3X10_00310) | 42785..43660 | - | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| D3X10_RS00290 (D3X10_00315) | 43987..44478 | - | 492 | WP_000139717.1 | hypothetical protein | - |
| D3X10_RS00295 (D3X10_00320) | 44475..45344 | - | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
| D3X10_RS00300 (D3X10_00325) | 45349..46359 | - | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| D3X10_RS00305 (D3X10_00330) | 46362..46898 | - | 537 | WP_000949433.1 | hypothetical protein | - |
| D3X10_RS00310 (D3X10_00340) | 47197..47478 | - | 282 | WP_000575657.1 | hypothetical protein | - |
| D3X10_RS00315 (D3X10_00345) | 47740..48342 | + | 603 | WP_000278322.1 | hypothetical protein | - |
| D3X10_RS00320 (D3X10_00350) | 48358..48810 | - | 453 | WP_000791469.1 | hypothetical protein | - |
| D3X10_RS00325 (D3X10_00355) | 48977..49276 | - | 300 | WP_011872911.1 | hypothetical protein | - |
| D3X10_RS00330 (D3X10_00360) | 49571..49843 | - | 273 | WP_000787563.1 | MafI family immunity protein | - |
| D3X10_RS00335 (D3X10_00365) | 49840..53994 | - | 4155 | WP_014342219.1 | Putative deoxyribonuclease RhsC | VF |
| D3X10_RS00340 (D3X10_00370) | 54235..54960 | - | 726 | WP_000988732.1 | hypothetical protein | - |
| D3X10_RS00345 (D3X10_00375) | 55074..55448 | - | 375 | WP_000868821.1 | hypothetical protein | - |
| D3X10_RS00350 | 55569..55685 | - | 117 | WP_000338626.1 | hypothetical protein | - |
| D3X10_RS00355 (D3X10_00380) | 55695..55934 | - | 240 | WP_000714162.1 | permease | - |
| D3X10_RS00360 (D3X10_00385) | 56007..56285 | - | 279 | WP_000268337.1 | hypothetical protein | - |
| D3X10_RS00365 (D3X10_00390) | 56272..57999 | - | 1728 | WP_000122923.1 | toprim domain-containing protein | - |
| D3X10_RS00370 (D3X10_00395) | 58177..58563 | - | 387 | WP_001077335.1 | hypothetical protein | - |
| D3X10_RS00375 (D3X10_00400) | 59021..59872 | - | 852 | WP_000595210.1 | hypothetical protein | - |
| D3X10_RS00380 (D3X10_00405) | 59947..60504 | - | 558 | WP_000064431.1 | pyruvate dehydrogenase | - |
| D3X10_RS00385 (D3X10_00410) | 60578..60796 | - | 219 | WP_000260293.1 | hypothetical protein | - |
| D3X10_RS00390 (D3X10_00415) | 60810..61079 | - | 270 | WP_000184110.1 | hypothetical protein | - |
| D3X10_RS00395 (D3X10_00420) | 61072..61677 | - | 606 | WP_000071870.1 | 5'-deoxynucleotidase | - |
| D3X10_RS00400 (D3X10_00425) | 61749..61952 | - | 204 | WP_000050848.1 | hypothetical protein | - |
| D3X10_RS00405 (D3X10_00430) | 62154..64607 | - | 2454 | WP_001187970.1 | phosphoadenosine phosphosulfate reductase | - |
| D3X10_RS00410 (D3X10_00435) | 64695..65081 | - | 387 | WP_000042274.1 | hypothetical protein | - |
| D3X10_RS00415 (D3X10_00440) | 65314..65868 | - | 555 | WP_001093868.1 | hypothetical protein | - |
| D3X10_RS00420 (D3X10_00445) | 65942..66373 | - | 432 | WP_000687894.1 | hypothetical protein | - |
| D3X10_RS00425 (D3X10_00450) | 66434..68059 | - | 1626 | WP_000201432.1 | DNA cytosine methyltransferase | - |
| D3X10_RS00430 (D3X10_00455) | 68137..68439 | - | 303 | WP_000410925.1 | hypothetical protein | - |
| D3X10_RS00435 (D3X10_00460) | 68517..68861 | - | 345 | WP_000209093.1 | hypothetical protein | - |
| D3X10_RS00440 (D3X10_00465) | 69053..69406 | - | 354 | WP_000994741.1 | hypothetical protein | - |
| D3X10_RS00445 (D3X10_00470) | 69475..69666 | - | 192 | WP_000651508.1 | hypothetical protein | - |
| D3X10_RS00450 (D3X10_00480) | 70004..70456 | - | 453 | WP_001176699.1 | hypothetical protein | - |
| D3X10_RS00455 (D3X10_00485) | 70446..70835 | - | 390 | WP_000026577.1 | hypothetical protein | - |
| D3X10_RS00460 (D3X10_00490) | 70897..71121 | - | 225 | WP_001102700.1 | class I ribonucleotide reductase maintenance protein YfaE | - |
| D3X10_RS00465 (D3X10_00495) | 71187..72071 | - | 885 | WP_000477209.1 | hypothetical protein | - |
| D3X10_RS00470 (D3X10_00500) | 72145..72645 | - | 501 | WP_000793769.1 | hypothetical protein | - |
| D3X10_RS00475 (D3X10_00505) | 72736..73275 | - | 540 | WP_000018872.1 | hypothetical protein | - |
| D3X10_RS00480 (D3X10_00510) | 73540..73875 | - | 336 | WP_001071288.1 | hypothetical protein | - |
| D3X10_RS00485 (D3X10_00515) | 73937..75733 | - | 1797 | WP_021598075.1 | VWA domain-containing protein | - |
| D3X10_RS00490 (D3X10_00520) | 75818..77095 | - | 1278 | WP_000170086.1 | DUF3150 domain-containing protein | - |
| D3X10_RS00495 (D3X10_00530) | 77295..78305 | - | 1011 | WP_000706865.1 | YqaJ viral recombinase family protein | - |
| D3X10_RS00500 (D3X10_00535) | 78367..79356 | - | 990 | WP_001282585.1 | phage recombination protein Bet | - |
| D3X10_RS00505 (D3X10_00540) | 79451..79981 | - | 531 | WP_000987165.1 | single-stranded DNA-binding protein | - |
| D3X10_RS00510 (D3X10_00545) | 80042..80950 | - | 909 | WP_000739139.1 | hypothetical protein | - |
| D3X10_RS00515 (D3X10_00550) | 80961..81929 | - | 969 | WP_000085162.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| D3X10_RS00520 (D3X10_00555) | 82149..82334 | - | 186 | WP_001186917.1 | hypothetical protein | - |
| D3X10_RS00525 (D3X10_00560) | 82638..82958 | - | 321 | WP_000547566.1 | hypothetical protein | - |
| D3X10_RS00530 (D3X10_00565) | 83252..83893 | + | 642 | WP_000796664.1 | hypothetical protein | - |
| D3X10_RS00535 (D3X10_00570) | 84016..84876 | + | 861 | WP_000709517.1 | hypothetical protein | - |
| D3X10_RS00540 (D3X10_00575) | 84915..87713 | - | 2799 | WP_001256487.1 | conjugal transfer mating pair stabilization protein TraN | - |
| D3X10_RS00545 (D3X10_00580) | 87829..88833 | - | 1005 | WP_043940352.1 | TraU family protein | - |
| D3X10_RS00550 (D3X10_00585) | 88833..89504 | - | 672 | WP_001337754.1 | EAL domain-containing protein | - |
| D3X10_RS00555 (D3X10_00590) | 89501..90766 | - | 1266 | WP_000621288.1 | TrbC family F-type conjugative pilus assembly protein | - |
| D3X10_RS00560 (D3X10_00595) | 90729..91259 | - | 531 | WP_001010738.1 | S26 family signal peptidase | - |
| D3X10_RS00565 (D3X10_00600) | 91256..91573 | - | 318 | WP_000351984.1 | hypothetical protein | - |
| D3X10_RS00570 (D3X10_00605) | 91588..94035 | - | 2448 | WP_000637386.1 | type IV secretion system protein TraC | - |
| D3X10_RS00575 (D3X10_00610) | 94032..94739 | - | 708 | WP_001259347.1 | DsbC family protein | - |
| D3X10_RS00580 (D3X10_00615) | 94888..100419 | - | 5532 | WP_000606833.1 | Ig-like domain-containing protein | - |
| D3X10_RS00585 (D3X10_00620) | 100620..101012 | - | 393 | WP_000479535.1 | TraA family conjugative transfer protein | - |
| D3X10_RS00590 (D3X10_00625) | 101016..101594 | - | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| D3X10_RS00595 (D3X10_00630) | 101591..102903 | - | 1313 | Protein_118 | conjugal transfer protein TraB | - |
| D3X10_RS00600 (D3X10_00635) | 102903..103820 | - | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| D3X10_RS00605 (D3X10_00640) | 103804..104430 | - | 627 | WP_001049716.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| D3X10_RS00610 (D3X10_00645) | 104427..104707 | - | 281 | Protein_121 | type IV conjugative transfer system protein TraL | - |
| D3X10_RS00615 (D3X10_00650) | 104852..105217 | - | 366 | WP_001052531.1 | hypothetical protein | - |
| D3X10_RS00620 (D3X10_00655) | 105553..106215 | - | 663 | WP_001231463.1 | hypothetical protein | - |
| D3X10_RS00625 (D3X10_00660) | 106215..106592 | - | 378 | WP_000869261.1 | hypothetical protein | - |
| D3X10_RS00630 (D3X10_00665) | 106602..107048 | - | 447 | WP_000122506.1 | hypothetical protein | - |
| D3X10_RS00635 (D3X10_00670) | 107058..107687 | - | 630 | WP_000743450.1 | DUF4400 domain-containing protein | - |
| D3X10_RS00640 (D3X10_00675) | 107644..108228 | - | 585 | WP_000332866.1 | hypothetical protein | - |
| D3X10_RS00645 (D3X10_00680) | 108239..110104 | - | 1866 | WP_000178856.1 | conjugative transfer system coupling protein TraD | - |
| D3X10_RS00650 (D3X10_00685) | 110101..113079 | - | 2979 | WP_001337757.1 | hypothetical protein | Relaxase |
| D3X10_RS00655 (D3X10_00690) | 113246..113863 | + | 618 | WP_001249396.1 | hypothetical protein | - |
| D3X10_RS00660 (D3X10_00700) | 114078..116270 | + | 2193 | WP_000366822.1 | DNA topoisomerase 3 | - |
| D3X10_RS00665 (D3X10_00705) | 116285..116773 | + | 489 | WP_000468105.1 | hypothetical protein | - |
| D3X10_RS00670 (D3X10_00710) | 116865..117032 | - | 168 | Protein_133 | ASCH domain-containing protein | - |
| D3X10_RS00675 (D3X10_00715) | 117132..118163 | + | 1032 | WP_031590183.1 | IS630 family transposase ISSpu2 | Transposase |
| D3X10_RS00680 (D3X10_00720) | 118184..118318 | - | 135 | Protein_135 | ASCH domain-containing protein | - |
| D3X10_RS00685 (D3X10_00730) | 118530..119147 | - | 618 | WP_000464631.1 | hypothetical protein | - |
| D3X10_RS00690 (D3X10_00735) | 119241..119459 | - | 219 | WP_000362482.1 | hypothetical protein | - |
| D3X10_RS00695 (D3X10_00740) | 119665..120321 | - | 657 | WP_000268551.1 | hypothetical protein | - |
| D3X10_RS00700 (D3X10_00745) | 120321..121748 | - | 1428 | WP_000936896.1 | DNA cytosine methyltransferase | - |
| D3X10_RS00705 (D3X10_00750) | 121752..122252 | - | 501 | WP_000647189.1 | hypothetical protein | - |
| D3X10_RS00710 (D3X10_00755) | 122261..122572 | - | 312 | WP_002210541.1 | hypothetical protein | - |
| D3X10_RS00715 (D3X10_00760) | 122578..123084 | - | 507 | WP_000566600.1 | hypothetical protein | - |
| D3X10_RS00720 (D3X10_00765) | 123077..123751 | - | 675 | WP_000344151.1 | thymidylate kinase | - |
| D3X10_RS00725 (D3X10_00775) | 123999..124376 | - | 378 | WP_001125905.1 | hypothetical protein | - |
| D3X10_RS00730 | 124695..124838 | + | 144 | WP_000939033.1 | hypothetical protein | - |
| D3X10_RS00735 (D3X10_00785) | 124930..125565 | + | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| D3X10_RS00740 (D3X10_00790) | 125618..125890 | - | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| D3X10_RS00745 (D3X10_00795) | 125939..127120 | - | 1182 | WP_001207227.1 | KorB domain-containing protein | - |
| D3X10_RS00750 (D3X10_00800) | 127124..127909 | - | 786 | WP_001151304.1 | Sporulation initiation inhibitor protein Soj | VF |
| D3X10_RS00755 (D3X10_00805) | 128083..128394 | - | 312 | WP_000338945.1 | hypothetical protein | - |
| D3X10_RS00760 (D3X10_00815) | 128701..129516 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| D3X10_RS00765 (D3X10_00820) | 129577..130380 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| D3X10_RS00770 (D3X10_00825) | 130380..131216 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| D3X10_RS00775 (D3X10_00835) | 131522..131764 | + | 243 | WP_000844627.1 | transposase | - |
| D3X10_RS00780 (D3X10_00840) | 131796..132446 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|