MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 90711 bp
Accession: NZ_CP032329 Location: 83165..173875 Organism: Xenorhabdus nematophila strain YL001 Replicon: chromosome
Accession: NZ_CP032329 Location: 83165..173875 Organism: Xenorhabdus nematophila strain YL001 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3790_RS00415 () | 78749..80506 | - | 1758 | WP_038220586.1 | type VI secretion system baseplate subunit TssF | - |
| D3790_RS00420 () | 80820..81218 | + | 399 | WP_038220587.1 | TIGR03757 family integrating conjugative element protein | - |
| D3790_RS00425 () | 81215..82181 | + | 967 | Protein_80 | TIGR03756 family integrating conjugative element protein | - |
| D3790_RS00430 () | 82194..83633 | + | 1440 | WP_038220588.1 | integrating conjugative element protein | - |
| D3790_RS00435 () | 83637..83981 | + | 345 | WP_038220589.1 | hypothetical protein | - |
| D3790_RS00440 () | 83978..85492 | + | 1515 | WP_038220590.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| D3790_RS00445 () | 85999..86364 | + | 366 | Protein_84 | 5-enolpyruvylshikimate-3-phosphate synthase | - |
| D3790_RS00450 () | 86557..86799 | + | 243 | Protein_85 | 5-enolpyruvylshikimate-3-phosphate synthase | - |
| D3790_RS00455 () | 86816..87292 | - | 477 | WP_113935509.1 | IS630 family transposase ISOt3 | Transposase |
| D3790_RS00460 () | 87324..87647 | - | 324 | WP_013185205.1 | IS630 family transposase ISTcSa | Transposase |
| D3790_RS00465 () | 87697..88461 | + | 765 | WP_119365201.1 | hypothetical protein | - |
| D3790_RS00470 () | 88522..89295 | + | 774 | WP_081480223.1 | phytanoyl-CoA dioxygenase family protein | - |
| D3790_RS00475 () | 89299..91044 | + | 1746 | WP_038220301.1 | thiamine pyrophosphate-binding protein | - |
| D3790_RS00480 () | 91058..92248 | + | 1191 | WP_041976370.1 | multidrug effflux MFS transporter | - |
| D3790_RS00485 () | 92300..93088 | + | 789 | WP_038220302.1 | SDR family oxidoreductase | - |
| D3790_RS00490 () | 94163..95077 | + | 915 | WP_041976373.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| D3790_RS00495 () | 95240..100270 | + | 5031 | WP_113935487.1 | ATP-dependent RecD-like DNA helicase | VF |
| D3790_RS00500 () | 100267..101790 | + | 1524 | WP_013185168.1 | hypothetical protein | - |
| D3790_RS00505 () | 102091..103131 | + | 1041 | WP_013141539.1 | IS481 family transposase ISVvu4 | Transposase |
| D3790_RS00510 () | 103190..103690 | - | 501 | Protein_97 | Tyrosine recombinase XerC ; Integrase | Integrase |
| D3790_RS00515 () | 104580..104861 | + | 282 | Protein_98 | transposase | - |
| D3790_RS00520 () | 104914..105291 | + | 378 | Protein_99 | IS630 family transposase | - |
| D3790_RS00525 () | 105856..106739 | + | 884 | Protein_100 | LysR family transcriptional regulator | - |
| D3790_RS00530 () | 106892..107746 | - | 855 | WP_081990853.1 | nucleoside transporter | - |
| D3790_RS00535 () | 107839..109352 | - | 1514 | Protein_102 | IS3 family transposase ISSde10 | Transposase |
| D3790_RS00545 () | 109938..110810 | + | 873 | WP_081480167.1 | IS630 family transposase ISPa47 | Transposase |
| D3790_RS00550 () | 111140..111565 | - | 426 | WP_012987825.1 | type II toxin-antitoxin system VapC family toxin | - |
| D3790_RS00555 () | 111565..111819 | - | 255 | WP_010846804.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| D3790_RS00560 () | 112044..112373 | + | 330 | WP_010846805.1 | type I toxin-antitoxin system SymE family toxin | - |
| D3790_RS00565 () | 112514..112852 | + | 339 | WP_010846806.1 | SymE family type I addiction module toxin | - |
| D3790_RS00570 () | 112955..113242 | + | 288 | WP_013184681.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D3790_RS00575 () | 113253..113537 | + | 285 | WP_010846808.1 | putative addiction module antidote protein | Antitoxin Detail |
| D3790_RS00580 () | 113620..114003 | - | 384 | WP_041976221.1 | hypothetical protein | - |
| D3790_RS00585 () | 114124..114333 | - | 210 | WP_013184683.1 | hypothetical protein | - |
| D3790_RS00590 () | 114456..115487 | - | 1032 | WP_038221118.1 | IS630 family transposase ISEc33 | Transposase |
| D3790_RS00595 () | 115569..115766 | + | 198 | WP_081990858.1 | replication initiation protein | - |
| D3790_RS00600 () | 115816..116430 | - | 615 | WP_010849037.1 | DUF4158 domain-containing protein | - |
| D3790_RS00605 () | 116626..117243 | + | 618 | WP_010849038.1 | Tn3 family transposase TnBth3 | Transposase |
| D3790_RS00610 () | 117319..117573 | + | 255 | WP_052145619.1 | replication initiation protein | - |
| D3790_RS00615 () | 117656..118540 | - | 885 | WP_052453850.1 | TauD/TfdA family dioxygenase | - |
| D3790_RS00620 () | 118711..119751 | + | 1041 | Protein_118 | IS630 family transposase ISPlu16 | Transposase |
| D3790_RS00625 () | 119760..120470 | + | 711 | Protein_119 | ISAs1 family transposase ISAeme1 | Transposase |
| D3790_RS00630 () | 121449..123884 | - | 2436 | WP_119365202.1 | toprim domain-containing protein | - |
| D3790_RS00635 () | 123994..124200 | - | 207 | WP_038220850.1 | AlpA family transcriptional regulator | - |
| D3790_RS00640 () | 124340..125104 | - | 765 | Protein_122 | Prophage integrase IntS ; Integrase | Integrase |
| D3790_RS00645 () | 125126..125956 | - | 831 | WP_119365203.1 | IS630 family transposase ISOt3 | Transposase |
| D3790_RS00655 () | 126381..127268 | + | 888 | WP_038220682.1 | Tyrosine-protein kinase YwqD | VF |
| D3790_RS00660 () | 127265..127654 | + | 390 | WP_038220681.1 | hypothetical protein | - |
| D3790_RS00665 () | 127638..129014 | + | 1377 | WP_041978425.1 | replicative DNA helicase | - |
| D3790_RS00670 () | 129018..130601 | + | 1584 | WP_038220684.1 | ParB family protein | - |
| D3790_RS00675 () | 130682..131263 | + | 582 | WP_038220680.1 | DUF2857 domain-containing protein | - |
| D3790_RS00680 () | 131284..131541 | + | 258 | WP_013185059.1 | hypothetical protein | - |
| D3790_RS00685 () | 131631..132854 | + | 1224 | WP_119365204.1 | helix-turn-helix domain-containing protein | - |
| D3790_RS00690 () | 133323..134048 | + | 726 | WP_038220812.1 | TIGR03761 family integrating conjugative element protein | - |
| D3790_RS00695 () | 134050..136044 | + | 1995 | WP_038220810.1 | DNA topoisomerase III | - |
| D3790_RS00700 () | 136088..136288 | - | 201 | WP_038220807.1 | hypothetical protein | - |
| D3790_RS00705 () | 136321..136785 | + | 465 | WP_038220805.1 | DUF3577 domain-containing protein | - |
| D3790_RS00710 () | 136864..137073 | + | 210 | WP_010846537.1 | hypothetical protein | - |
| D3790_RS00715 () | 137091..137603 | + | 513 | WP_038220803.1 | single-stranded DNA-binding protein | - |
| D3790_RS00720 () | 137724..140123 | - | 2400 | WP_199874574.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| D3790_RS00725 () | 140724..141002 | + | 279 | WP_187007112.1 | helix-turn-helix domain-containing protein | - |
| D3790_RS00730 () | 141108..141644 | + | 537 | WP_038220801.1 | hypothetical protein | VF |
| D3790_RS00735 () | 141641..142336 | + | 696 | WP_038220799.1 | TIGR03759 family integrating conjugative element protein | - |
| D3790_RS00740 () | 142318..142857 | + | 540 | WP_038220797.1 | integrating conjugative element protein | - |
| D3790_RS00745 () | 142854..144917 | + | 2064 | WP_038220795.1 | type IV conjugative transfer system coupling protein TraD | - |
| D3790_RS00750 () | 144927..145685 | + | 759 | WP_038220794.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| D3790_RS00755 () | 145686..145913 | + | 228 | WP_041979785.1 | hypothetical protein | - |
| D3790_RS00760 () | 145873..146727 | + | 855 | WP_162781341.1 | hypothetical protein | - |
| D3790_RS00765 () | 146845..147537 | - | 693 | WP_119365205.1 | hypothetical protein | - |
| D3790_RS00770 () | 147686..148015 | + | 330 | WP_038220947.1 | RAQPRD family integrative conjugative element protein | - |
| D3790_RS00775 () | 148012..148248 | + | 237 | WP_013185221.1 | TIGR03758 family integrating conjugative element protein | - |
| D3790_RS00780 () | 148284..148661 | + | 378 | WP_038220949.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| D3790_RS00785 () | 148672..149046 | + | 375 | WP_041976408.1 | TIGR03750 family conjugal transfer protein | - |
| D3790_RS00790 () | 149043..149700 | + | 658 | Protein_151 | TIGR03746 family integrating conjugative element protein | - |
| D3790_RS00795 () | 149697..150533 | + | 837 | WP_038221132.1 | TIGR03749 family integrating conjugative element protein | - |
| D3790_RS00800 () | 150523..151953 | + | 1431 | WP_041976411.1 | TIGR03752 family integrating conjugative element protein | - |
| D3790_RS00805 () | 151953..152309 | + | 357 | WP_038221017.1 | hypothetical protein | - |
| D3790_RS00810 () | 152297..152698 | + | 402 | WP_038221019.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| D3790_RS00815 () | 152698..155469 | + | 2772 | WP_119365206.1 | conjugative transfer ATPase | - |
| D3790_RS00820 () | 155555..155887 | - | 333 | WP_013185148.1 | DUF600 family protein | - |
| D3790_RS00825 () | 155887..160506 | - | 4620 | WP_052453837.1 | 16S rRNA endonuclease CdiA | VF |
| D3790_RS00830 () | 160555..162252 | - | 1698 | WP_119365207.1 | Hemolysin transporter protein ShlB | VF |
| D3790_RS00835 () | 162715..165978 | + | 3264 | WP_038220326.1 | Invasin | VF |
| D3790_RS00840 () | 166194..166986 | - | 793 | Protein_161 | hypothetical protein | - |
| D3790_RS00845 () | 167159..167707 | - | 549 | WP_013185153.1 | hypothetical protein | - |
| D3790_RS00850 () | 167713..172143 | - | 4431 | WP_041976360.1 | AHH domain-containing protein | - |
| D3790_RS00855 () | 172156..172575 | - | 420 | WP_038220820.1 | DUF1795 domain-containing protein | - |
| D3790_RS00860 () | 172674..174761 | - | 2088 | WP_041976363.1 | type VI secretion system tip protein VgrG | - |
| D3790_RS00870 () | 175187..176395 | + | 1209 | WP_119365208.1 | IS256 family transposase | - |
| D3790_RS00875 () | 176414..176653 | - | 240 | WP_038220708.1 | hypothetical protein | - |
| D3790_RS00880 () | 176742..176954 | - | 213 | WP_038220707.1 | AlpA family transcriptional regulator | - |
| D3790_RS00885 () | 177180..178394 | - | 1215 | WP_038220706.1 | tyrosine-type recombinase/integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|