MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 80843 bp
Accession: NZ_CP032236 Location: 1..80843 Organism: Yersinia ruckeri strain NHV_3758 Replicon: plasmid pYR4
Accession: NZ_CP032236 Location: 1..80843 Organism: Yersinia ruckeri strain NHV_3758 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLC90_RS17225 () | 284..1393 | - | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| CLC90_RS17230 () | 1428..1703 | - | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| CLC90_RS17235 () | 1932..3083 | - | 1152 | WP_126940151.1 | Alcohol dehydrogenase 2 | VF |
| CLC90_RS17240 () | 3201..3358 | - | 158 | Protein_4 | IS5 family transposase ISSba21 | Transposase |
| CLC90_RS17245 () | 3364..3445 | - | 82 | Protein_5 | regulator protein FrmR | - |
| CLC90_RS17250 () | 3881..5278 | - | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| CLC90_RS17255 () | 5315..5887 | - | 573 | WP_126940153.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| CLC90_RS17260 () | 6019..6609 | - | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| CLC90_RS17265 () | 7015..8280 | + | 1266 | WP_193553635.1 | hypothetical protein | - |
| CLC90_RS17270 () | 8569..8934 | + | 366 | Protein_10 | Tn3 family transposase | - |
| CLC90_RS17275 () | 9965..10915 | - | 951 | WP_126940197.1 | Replication protein | - |
| CLC90_RS17280 () | 11812..12522 | + | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| CLC90_RS17735 () | 12579..12740 | - | 162 | WP_004720783.1 | hypothetical protein | - |
| CLC90_RS17285 () | 13037..13408 | - | 372 | WP_126940157.1 | helix-turn-helix domain-containing protein | - |
| CLC90_RS17290 () | 13703..14212 | + | 510 | WP_004720786.1 | transcription termination factor NusG | - |
| CLC90_RS17295 () | 14440..15141 | + | 702 | WP_004720789.1 | DUF2913 family protein | - |
| CLC90_RS17300 () | 15204..15404 | + | 201 | WP_004720790.1 | hypothetical protein | - |
| CLC90_RS17305 () | 15482..16525 | + | 1044 | WP_162486785.1 | hypothetical protein | VF |
| CLC90_RS17310 () | 16525..16950 | + | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| CLC90_RS17315 () | 16971..18592 | + | 1622 | Protein_20 | Outer membrane lipoprotein BfpB | VF |
| CLC90_RS17320 () | 18772..19320 | + | 549 | WP_162486786.1 | hypothetical protein | - |
| CLC90_RS17325 () | 19324..19968 | + | 645 | WP_115369972.1 | type 4b pilus protein PilO2 | - |
| CLC90_RS17330 () | 19914..20636 | + | 723 | WP_115369970.1 | type 4b pilus protein PilO2 | - |
| CLC90_RS17335 () | 20623..21210 | + | 588 | WP_049688157.1 | hypothetical protein | VF |
| CLC90_RS17340 () | 21214..22706 | + | 1493 | Protein_25 | Type II secretion system protein E | VF |
| CLC90_RS17345 () | 22721..23845 | + | 1125 | WP_126940198.1 | hypothetical protein | VF |
| CLC90_RS17350 () | 23883..24476 | + | 594 | WP_038251880.1 | hypothetical protein | VF |
| CLC90_RS17355 () | 24538..25023 | + | 486 | WP_004720806.1 | hypothetical protein | VF |
| CLC90_RS17740 () | 25023..25220 | + | 198 | WP_162486787.1 | hypothetical protein | - |
| CLC90_RS17360 () | 25265..25672 | + | 408 | WP_004720807.1 | hypothetical protein | VF |
| CLC90_RS17365 () | 25669..27042 | + | 1374 | WP_099511713.1 | hypothetical protein | VF |
| CLC90_RS17370 () | 27568..28023 | + | 456 | WP_004720812.1 | hypothetical protein | VF |
| CLC90_RS17375 () | 28020..28808 | + | 789 | WP_038251876.1 | hypothetical protein | VF |
| CLC90_RS17380 () | 28808..29962 | + | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| CLC90_RS17385 () | 29959..30219 | + | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| CLC90_RS17390 () | 30235..33588 | + | 3354 | WP_126940163.1 | hypothetical protein | - |
| CLC90_RS17395 () | 33596..33922 | + | 327 | Protein_37 | hypothetical protein | - |
| CLC90_RS17400 () | 34068..34790 | + | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| CLC90_RS17405 () | 34809..35804 | + | 996 | WP_162486788.1 | hypothetical protein | VF |
| CLC90_RS17410 () | 35807..37060 | + | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| CLC90_RS17415 () | 37120..37827 | + | 708 | WP_126940165.1 | hypothetical protein | - |
| CLC90_RS17420 () | 37827..38354 | + | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| CLC90_RS17425 () | 38379..38762 | + | 384 | WP_004720828.1 | hypothetical protein | - |
| CLC90_RS17430 () | 38823..39779 | + | 957 | WP_004720829.1 | hypothetical protein | - |
| CLC90_RS17435 () | 39802..42879 | + | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| CLC90_RS17440 () | 42893..44086 | + | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| CLC90_RS17445 () | 44086..44691 | + | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| CLC90_RS17450 () | 44758..46899 | + | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| CLC90_RS17455 () | 47005..47223 | + | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| CLC90_RS17460 () | 47245..47925 | + | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| CLC90_RS17465 () | 48021..49304 | + | 1284 | WP_004720838.1 | hypothetical protein | - |
| CLC90_RS17470 () | 49309..50373 | + | 1065 | WP_126940169.1 | DsbC family protein | - |
| CLC90_RS17475 () | 50384..52684 | + | 2301 | WP_126940170.1 | hypothetical protein | VF |
| CLC90_RS17480 () | 52771..53307 | + | 537 | WP_126940171.1 | Phospholipase D | VF |
| CLC90_RS17485 () | 53408..56110 | - | 2703 | WP_126940172.1 | DNA repair protein | - |
| CLC90_RS17490 () | 56490..57539 | - | 1050 | WP_126940173.1 | Abi family protein | - |
| CLC90_RS17495 () | 57836..59761 | - | 1926 | WP_004720847.1 | Protein TraI | Relaxase |
| CLC90_RS17500 () | 59763..60107 | - | 345 | WP_004720848.1 | hypothetical protein | - |
| CLC90_RS17505 () | 60376..60699 | + | 324 | WP_004720850.1 | hypothetical protein | - |
| CLC90_RS17510 () | 61238..62051 | - | 814 | Protein_60 | DUF945 domain-containing protein | - |
| CLC90_RS17515 () | 62539..62835 | - | 297 | WP_004720859.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CLC90_RS17520 () | 62881..63204 | - | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CLC90_RS17525 () | 63356..63589 | + | 234 | WP_038251853.1 | hypothetical protein | - |
| CLC90_RS17530 () | 63597..64094 | - | 498 | WP_126940174.1 | hypothetical protein | - |
| CLC90_RS17535 () | 64091..64450 | - | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| CLC90_RS17540 () | 65209..65919 | - | 711 | WP_126940176.1 | type I restriction-modification system subunit M | - |
| CLC90_RS17545 () | 66065..66211 | - | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| CLC90_RS17550 () | 66297..66653 | - | 357 | WP_126940178.1 | hypothetical protein | - |
| CLC90_RS17555 () | 67407..67607 | - | 201 | WP_126940179.1 | hypothetical protein | - |
| CLC90_RS17560 () | 67650..68156 | - | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| CLC90_RS17570 () | 68548..69327 | - | 780 | WP_126940182.1 | hypothetical protein | - |
| CLC90_RS17575 () | 69609..70079 | - | 471 | WP_126940183.1 | hypothetical protein | - |
| CLC90_RS17585 () | 70418..70819 | - | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| CLC90_RS17590 () | 70821..71795 | - | 975 | WP_126940201.1 | plasmid segregation protein parM | - |
| CLC90_RS17595 () | 72099..72752 | + | 654 | WP_126940185.1 | AAA family ATPase | - |
| CLC90_RS17600 () | 72786..73067 | + | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| CLC90_RS17605 () | 73268..74224 | - | 957 | WP_126940187.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| CLC90_RS17610 () | 74748..75671 | + | 924 | WP_126940188.1 | DUF2971 domain-containing protein | - |
| CLC90_RS17615 () | 75988..76683 | + | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
| CLC90_RS17620 () | 76777..77424 | - | 648 | WP_126940190.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| CLC90_RS17625 () | 77668..77895 | + | 228 | WP_126940191.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| CLC90_RS17630 () | 77943..78638 | + | 696 | WP_126940192.1 | IS6 family transposase ISEas1 | Transposase |
| CLC90_RS17635 () | 78712..79290 | - | 579 | WP_126940193.1 | hypothetical protein | - |
| CLC90_RS17640 () | 79515..79751 | + | 237 | Protein_84 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| CLC90_RS17645 () | 79779..80615 | - | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|