MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73123 bp
Accession: NZ_CP031970 Location: 968386..1041508 Organism: Streptococcus suis strain SFJ44 Replicon: chromosome
Accession: NZ_CP031970 Location: 968386..1041508 Organism: Streptococcus suis strain SFJ44 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2A30_RS04955 (D2A30_05075) | 964015..966210 | - | 2196 | WP_239604805.1 | ABC transporter substrate-binding protein/permease | - |
| D2A30_RS04960 (D2A30_05080) | 966414..968399 | + | 1986 | WP_239604806.1 | excinuclease ABC subunit UvrB | - |
| D2A30_RS04965 (D2A30_05090) | 968634..969209 | - | 576 | WP_174846540.1 | LysR substrate-binding domain-containing protein | - |
| D2A30_RS04970 (D2A30_05095) | 969219..969470 | - | 252 | WP_174846539.1 | HTH-type transcriptional regulator CatM | VF |
| D2A30_RS04975 (D2A30_05100) | 969723..970421 | + | 699 | WP_239604807.1 | XRE family transcriptional regulator | - |
| D2A30_RS04980 (D2A30_05105) | 970455..971870 | + | 1416 | WP_239604842.1 | Y-family DNA polymerase | - |
| D2A30_RS04985 (D2A30_05110) | 971867..972226 | + | 360 | WP_171988461.1 | 50S ribosomal protein L23 | - |
| D2A30_RS04990 (D2A30_05115) | 972219..972527 | + | 309 | WP_024404697.1 | DUF5960 family protein | - |
| D2A30_RS04995 | 972597..972812 | + | 216 | WP_216806834.1 | hypothetical protein | - |
| D2A30_RS05000 (D2A30_05120) | 972809..973441 | + | 633 | WP_239604808.1 | hypothetical protein | - |
| D2A30_RS05005 (D2A30_05130) | 974095..975285 | + | 1191 | WP_010706102.1 | IS256 family transposase ISLgar5 | Transposase |
| D2A30_RS05010 (D2A30_05135) | 975419..977608 | + | 2190 | WP_000470931.1 | AAA family ATPase | - |
| D2A30_RS05015 (D2A30_05140) | 977605..979398 | + | 1794 | WP_239604809.1 | ATP-dependent helicase | - |
| D2A30_RS05020 (D2A30_05145) | 979598..979864 | + | 267 | WP_239604810.1 | YdcP family protein | - |
| D2A30_RS05025 (D2A30_05150) | 979933..980310 | + | 378 | WP_001234191.1 | YdcP family protein | - |
| D2A30_RS05030 (D2A30_05155) | 980320..981093 | + | 774 | WP_239604811.1 | hypothetical protein | - |
| D2A30_RS05035 (D2A30_05160) | 981115..982518 | + | 1404 | WP_001130244.1 | FtsK/SpoIIIE domain-containing protein | - |
| D2A30_RS05040 (D2A30_05165) | 982700..983884 | + | 1185 | Protein_960 | MobT family relaxase | - |
| D2A30_RS05045 (D2A30_05170) | 983881..984171 | + | 291 | WP_000055376.1 | hypothetical protein | - |
| D2A30_RS05050 (D2A30_05175) | 984168..984389 | + | 222 | WP_001009054.1 | hypothetical protein | - |
| D2A30_RS05055 (D2A30_05180) | 984431..985210 | + | 780 | WP_000675717.1 | abortive infection family protein | - |
| D2A30_RS05060 (D2A30_05185) | 985277..985771 | + | 495 | WP_000870467.1 | antirestriction protein ArdA | - |
| D2A30_RS05065 (D2A30_05190) | 985827..986465 | + | 639 | WP_000248477.1 | DUF6037 family protein | - |
| D2A30_RS05070 (D2A30_05195) | 986537..986932 | + | 396 | WP_239604812.1 | conjugal transfer protein | - |
| D2A30_RS05075 (D2A30_05200) | 986916..989369 | + | 2454 | WP_000331165.1 | ATP-binding protein | - |
| D2A30_RS05080 (D2A30_05205) | 989366..991393 | + | 2028 | WP_171988465.1 | hypothetical protein | - |
| D2A30_RS05085 (D2A30_05210) | 991390..992412 | + | 1023 | WP_000768373.1 | Gamma-DL-glutamyl hydrolase | VF |
| D2A30_RS05090 (D2A30_05215) | 992429..993358 | + | 930 | WP_171988466.1 | conjugal transfer protein | - |
| D2A30_RS05095 (D2A30_05220) | 993603..993719 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| D2A30_RS05100 (D2A30_05225) | 993735..995507 | + | 1773 | Protein_972 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| D2A30_RS05105 (D2A30_05230) | 995543..996802 | + | 1260 | WP_091232356.1 | Putative sialic acid transporter | ARG |
| D2A30_RS05110 (D2A30_05235) | 996786..997124 | + | 339 | Protein_974 | Tetracycline resistance protein TetO | VF |
| D2A30_RS05115 (D2A30_05240) | 997399..998706 | - | 1308 | WP_239604813.1 | transposase zinc-binding domain-containing protein | - |
| D2A30_RS05120 (D2A30_05245) | 998944..999099 | + | 156 | WP_239604814.1 | IS30 family transposase ISAeca1 | Transposase |
| D2A30_RS05125 (D2A30_05250) | 999388..999504 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| D2A30_RS05130 (D2A30_05255) | 999520..1001439 | + | 1920 | WP_239604815.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| D2A30_RS05135 (D2A30_05260) | 1001537..1001725 | + | 189 | WP_032506803.1 | cysteine-rich KTR domain-containing protein | - |
| D2A30_RS05140 (D2A30_05265) | 1001783..1002136 | - | 354 | WP_239604816.1 | helix-turn-helix transcriptional regulator | - |
| D2A30_RS05145 (D2A30_05275) | 1002641..1003063 | + | 423 | WP_239604817.1 | sigma-70 family RNA polymerase sigma factor | - |
| D2A30_RS05150 (D2A30_05280) | 1003060..1003290 | + | 231 | WP_000845143.1 | helix-turn-helix domain-containing protein | - |
| D2A30_RS05155 (D2A30_05290) | 1003788..1003988 | + | 201 | WP_000633907.1 | DUF3173 family protein | - |
| D2A30_RS05160 (D2A30_05295) | 1004015..1005208 | + | 1194 | WP_000237797.1 | Putative defective protein IntQ ; Integrase | Integrase |
| D2A30_RS05165 (D2A30_05300) | 1005276..1006826 | - | 1551 | WP_216806828.1 | glutamine-hydrolyzing GMP synthase | - |
| D2A30_RS05170 (D2A30_05305) | 1007099..1007797 | + | 699 | WP_239604818.1 | GntR family transcriptional regulator | - |
| D2A30_RS05175 (D2A30_05310) | 1007903..1008235 | + | 333 | WP_216658250.1 | putative DNA-binding protein | - |
| D2A30_RS05180 (D2A30_05315) | 1008248..1009822 | + | 1575 | WP_239604819.1 | signal recognition particle protein | - |
| D2A30_RS05185 (D2A30_05320) | 1009859..1011313 | + | 1455 | WP_171988471.1 | alpha-amylase | - |
| D2A30_RS05190 (D2A30_05325) | 1011499..1012167 | + | 669 | WP_239604820.1 | SatD family protein | - |
| D2A30_RS05195 (D2A30_05330) | 1012172..1012912 | + | 741 | WP_239604821.1 | DUF3307 domain-containing protein | - |
| D2A30_RS05200 (D2A30_05340) | 1013705..1014775 | + | 1071 | WP_171988517.1 | Tyrosine recombinase XerS ; Integrase | Integrase |
| D2A30_RS05205 (D2A30_05345) | 1015053..1016561 | - | 1509 | WP_239603893.1 | Phosphomannomutase/phosphoglucomutase | VF |
| D2A30_RS05210 (D2A30_05355) | 1016742..1017683 | - | 942 | WP_239603894.1 | sensor histidine kinase | - |
| D2A30_RS05215 (D2A30_05360) | 1017680..1018348 | - | 669 | WP_239603895.1 | Response regulator protein GraR | VF |
| D2A30_RS05220 (D2A30_05365) | 1018386..1018643 | - | 258 | WP_239603896.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D2A30_RS05225 (D2A30_05370) | 1018633..1018872 | - | 240 | WP_105142535.1 | DUF6290 family protein | Antitoxin Detail |
| D2A30_RS05230 (D2A30_05375) | 1018963..1020933 | - | 1971 | WP_239603897.1 | ABC transporter permease | - |
| D2A30_RS05235 (D2A30_05380) | 1020934..1021686 | - | 753 | WP_171988480.1 | ABC transporter ATP-binding protein YxdL | VF |
| D2A30_RS05240 (D2A30_05385) | 1021695..1022084 | - | 390 | WP_239603898.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| D2A30_RS05245 (D2A30_05390) | 1022097..1022237 | - | 141 | WP_239603899.1 | hypothetical protein | - |
| D2A30_RS05250 (D2A30_05395) | 1022376..1023542 | - | 1167 | WP_239603900.1 | ATP-grasp domain-containing protein | - |
| D2A30_RS05255 (D2A30_05400) | 1023560..1024306 | - | 747 | WP_174845941.1 | alpha/beta hydrolase-fold protein | - |
| D2A30_RS05260 (D2A30_05405) | 1024338..1025165 | - | 828 | WP_239603901.1 | alpha/beta hydrolase | - |
| D2A30_RS05265 (D2A30_05410) | 1025274..1026284 | - | 1011 | WP_239603902.1 | crosslink repair DNA glycosylase YcaQ family protein | - |
| D2A30_RS05270 (D2A30_05415) | 1026351..1027187 | - | 837 | WP_239603903.1 | AraC family transcriptional regulator | - |
| D2A30_RS05275 (D2A30_05420) | 1027264..1028598 | - | 1335 | WP_171988488.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| D2A30_RS05280 (D2A30_05425) | 1028768..1028968 | - | 201 | WP_171988489.1 | hypothetical protein | - |
| D2A30_RS05285 | 1029248..1029589 | - | 342 | WP_239603904.1 | HAD family hydrolase | - |
| D2A30_RS05290 | 1029652..1029996 | - | 345 | WP_239603905.1 | hypothetical protein | - |
| D2A30_RS05295 (D2A30_05435) | 1030131..1030622 | - | 492 | WP_171988491.1 | YkgJ family cysteine cluster protein | - |
| D2A30_RS05300 (D2A30_05440) | 1030674..1031321 | - | 648 | WP_239603906.1 | Maf family protein | - |
| D2A30_RS05305 (D2A30_05445) | 1031373..1033592 | - | 2220 | WP_239603907.1 | Mannosylglucosyl-3-phosphoglycerate phosphatase | VF |
| D2A30_RS05310 (D2A30_05450) | 1033930..1035201 | - | 1272 | WP_216806808.1 | dihydroorotase | - |
| D2A30_RS05315 (D2A30_05455) | 1035232..1035885 | - | 654 | WP_239603908.1 | uracil-DNA glycosylase | - |
| D2A30_RS05320 (D2A30_05460) | 1035895..1036821 | - | 927 | WP_239603909.1 | Prophage bactoprenol glucosyl transferase | VF |
| D2A30_RS05325 (D2A30_05465) | 1036927..1037559 | - | 633 | WP_171988496.1 | orotate phosphoribosyltransferase | - |
| D2A30_RS05330 (D2A30_05470) | 1037573..1037770 | - | 198 | WP_239603910.1 | hypothetical protein | - |
| D2A30_RS05335 (D2A30_05475) | 1037833..1038528 | - | 696 | WP_239603911.1 | orotidine-5'-phosphate decarboxylase | - |
| D2A30_RS05340 (D2A30_05480) | 1038696..1039637 | - | 942 | WP_239603912.1 | dihydroorotate dehydrogenase | - |
| D2A30_RS05345 (D2A30_05485) | 1039647..1040420 | - | 774 | WP_171988500.1 | dihydroorotate dehydrogenase electron transfer subunit | - |
| D2A30_RS05350 (D2A30_05490) | 1040630..1041541 | + | 912 | WP_239603913.1 | LysR family transcriptional regulator | - |
| D2A30_RS05355 (D2A30_05495) | 1041689..1042816 | + | 1128 | WP_171988502.1 | glucose-1-phosphate adenylyltransferase | - |
| D2A30_RS05360 (D2A30_05500) | 1042829..1043944 | + | 1116 | WP_171988503.1 | glucose-1-phosphate adenylyltransferase subunit GlgD | - |
| D2A30_RS05365 (D2A30_05505) | 1043953..1045398 | + | 1446 | WP_239603914.1 | glycogen synthase GlgA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|