MGE detailed information
MGE type: Conjugative plasmid MGE length: 127578 bp
Accession: NZ_CP031707 Location: 1..127578 Organism: Escherichia coli strain R1 Replicon: plasmid pVirR1
Accession: NZ_CP031707 Location: 1..127578 Organism: Escherichia coli strain R1 Replicon: plasmid pVirR1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0T88_RS24225 () | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| D0T88_RS24230 () | 1263..1643 | + | 381 | WP_001171554.1 | IS66 family insertion sequence hypothetical protein | - |
| D0T88_RS24235 () | 1640..1987 | + | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| D0T88_RS24240 () | 2037..3575 | + | 1539 | WP_137546056.1 | IS66-like element ISEc8 family transposase | - |
| D0T88_RS24245 () | 3713..4453 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| D0T88_RS24250 () | 4577..4762 | - | 186 | Protein_5 | hypothetical protein | - |
| D0T88_RS24255 () | 5136..6038 | - | 903 | WP_063113277.1 | antimicrobial resistance protein Mig-14 | - |
| D0T88_RS24260 () | 6107..7216 | - | 1110 | WP_063113275.1 | SDR family oxidoreductase | - |
| D0T88_RS24265 () | 7653..8595 | - | 943 | Protein_8 | omptin family outer membrane protease | - |
| D0T88_RS24270 () | 8939..9088 | + | 150 | WP_163449823.1 | hypothetical protein | - |
| D0T88_RS24275 () | 9871..10287 | - | 417 | WP_077880563.1 | integrase core domain-containing protein | - |
| D0T88_RS24280 () | 11978..12406 | + | 429 | Protein_11 | biotin/lipoyl-binding protein | - |
| D0T88_RS24285 () | 12408..14201 | + | 1794 | Protein_12 | ABC transporter permease | - |
| D0T88_RS24290 () | 14205..15575 | + | 1371 | WP_063113273.1 | efflux transporter outer membrane subunit | - |
| D0T88_RS24295 () | 16113..23915 | - | 7803 | WP_063113272.1 | DUF3491 domain-containing protein | - |
| D0T88_RS24300 () | 24096..24398 | + | 303 | Protein_15 | transposase | - |
| D0T88_RS24305 () | 24395..24602 | + | 208 | Protein_16 | hypothetical protein | - |
| D0T88_RS24310 () | 24841..26037 | - | 1197 | WP_063113271.1 | right-handed parallel beta-helix repeat-containing protein | - |
| D0T88_RS24315 () | 26073..26724 | - | 652 | Protein_18 | EAL domain-containing protein | - |
| D0T88_RS24320 () | 26864..26979 | + | 116 | Protein_19 | IS630 family transposase | - |
| D0T88_RS24325 () | 27542..28084 | + | 543 | WP_063113270.1 | chorismate mutase | - |
| D0T88_RS24330 () | 28496..28720 | + | 225 | WP_063113268.1 | hypothetical protein | - |
| D0T88_RS24335 () | 29090..29259 | - | 170 | Protein_22 | IS110 family transposase | - |
| D0T88_RS24340 () | 29523..29672 | - | 150 | Protein_23 | IS21 family transposase | - |
| D0T88_RS24345 () | 29768..30433 | + | 666 | WP_097763994.1 | PIG-L family deacetylase | - |
| D0T88_RS24350 () | 30436..31632 | + | 1197 | WP_099746847.1 | glycosyltransferase family 2 protein | - |
| D0T88_RS24355 () | 31610..32191 | + | 582 | WP_063113291.1 | acetyltransferase | - |
| D0T88_RS24360 () | 32193..32966 | + | 774 | WP_050938857.1 | YaiO family outer membrane beta-barrel protein | - |
| D0T88_RS24365 () | 33896..34162 | - | 267 | Protein_28 | transposase | - |
| D0T88_RS24370 () | 34125..34277 | - | 153 | WP_074147422.1 | transposase | - |
| D0T88_RS24375 () | 34344..35078 | - | 735 | WP_063113288.1 | helix-turn-helix domain-containing protein | - |
| D0T88_RS24380 () | 35749..36189 | + | 441 | Protein_31 | (Fe-S)-binding protein | - |
| D0T88_RS24385 () | 36311..36727 | + | 417 | WP_157904473.1 | hypothetical protein | - |
| D0T88_RS24390 () | 37063..40107 | - | 3045 | WP_057108870.1 | cytotoxic necrotizing factor CNF2 | - |
| D0T88_RS24395 () | 40244..40705 | - | 462 | Protein_34 | IS3 family transposase | - |
| D0T88_RS24400 () | 40786..42288 | - | 1503 | Protein_35 | group II intron reverse transcriptase/maturase | - |
| D0T88_RS24405 () | 42960..43666 | - | 707 | Protein_36 | transposase | - |
| D0T88_RS24410 () | 43663..43889 | - | 227 | Protein_37 | phosphoadenosine phosphosulfate reductase | - |
| D0T88_RS24415 () | 44338..45774 | - | 1437 | WP_033559375.1 | alpha-hemolysin T1SS ABC transporter subunit HlyD | - |
| D0T88_RS24420 () | 45793..47916 | - | 2124 | WP_063113287.1 | type I secretion system permease/ATPase | - |
| D0T88_RS24425 () | 47987..51061 | - | 3075 | WP_063113286.1 | RTX toxin hemolysin HlyA | - |
| D0T88_RS24430 () | 51073..51585 | - | 513 | WP_032494174.1 | alpha-hemolysin-activating lysine-acyltransferase HlyC | - |
| D0T88_RS24435 () | 52833..53087 | - | 255 | Protein_42 | transposase | - |
| D0T88_RS24440 () | 53134..54298 | + | 1165 | Protein_43 | IS3 family transposase | - |
| D0T88_RS24445 () | 54904..55155 | + | 252 | WP_033559377.1 | hypothetical protein | - |
| D0T88_RS24450 () | 55210..55461 | - | 252 | WP_042004542.1 | hypothetical protein | - |
| D0T88_RS24455 () | 55442..55681 | - | 240 | WP_042004543.1 | hypothetical protein | - |
| D0T88_RS24460 () | 56134..56394 | - | 261 | Protein_47 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| D0T88_RS24465 () | 56412..56681 | - | 270 | WP_000079930.1 | hypothetical protein | - |
| D0T88_RS24470 () | 56736..56894 | - | 159 | WP_063113284.1 | hypothetical protein | - |
| D0T88_RS24475 () | 57601..58623 | - | 1023 | WP_063113283.1 | replication initiation protein | - |
| D0T88_RS24480 () | 58613..59146 | - | 534 | WP_063113282.1 | replication protein | - |
| D0T88_RS24485 () | 59139..59216 | - | 78 | WP_063113289.1 | RepA leader peptide Tap | - |
| D0T88_RS24490 () | 59448..59705 | - | 258 | WP_021553168.1 | replication regulatory protein RepA | - |
| D0T88_RS24495 () | 59989..60138 | - | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 60183..60242 | + | 60 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60183..60242 | + | 60 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60183..60242 | + | 60 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60183..60242 | + | 60 | NuclAT_0 | - | Antitoxin Detail |
| D0T88_RS24500 () | 60385..60858 | - | 474 | WP_063113281.1 | hypothetical protein | - |
| D0T88_RS24505 () | 61012..61602 | - | 591 | Protein_56 | DUF2726 domain-containing protein | - |
| D0T88_RS24510 () | 61649..63187 | - | 1539 | WP_137546056.1 | IS66-like element ISEc8 family transposase | - |
| D0T88_RS24515 () | 63237..63584 | - | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| D0T88_RS24520 () | 63581..63961 | - | 381 | WP_001171554.1 | IS66 family insertion sequence hypothetical protein | - |
| D0T88_RS24525 () | 64091..64300 | - | 210 | WP_063113249.1 | hemolysin expression modulator Hha | - |
| D0T88_RS24530 () | 64346..64807 | - | 462 | WP_063113250.1 | thermonuclease family protein | - |
| D0T88_RS24535 () | 65051..65263 | - | 213 | WP_063113251.1 | hypothetical protein | - |
| D0T88_RS24540 () | 65403..65963 | - | 561 | WP_063113252.1 | fertility inhibition protein FinO | - |
| D0T88_RS24545 () | 66066..66926 | - | 861 | WP_063113253.1 | alpha/beta hydrolase | - |
| D0T88_RS24550 () | 66976..67725 | - | 750 | WP_063113254.1 | conjugal transfer pilus acetylase TraX | - |
| D0T88_RS24555 () | 67745..73015 | - | 5271 | WP_063113255.1 | conjugative transfer relaxase/helicase TraI | - |
| D0T88_RS24560 () | 73097..73324 | + | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| D0T88_RS24565 () | 73324..73722 | + | 399 | WP_000911317.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| D0T88_RS24570 () | 73731..75884 | - | 2154 | WP_063113256.1 | type IV conjugative transfer system coupling protein TraD | - |
| D0T88_RS24575 () | 75935..76672 | - | 738 | WP_063113257.1 | hypothetical protein | - |
| D0T88_RS24580 () | 76875..77606 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| D0T88_RS24585 () | 77638..78135 | - | 498 | WP_063113258.1 | entry exclusion protein | - |
| D0T88_RS24590 () | 78154..80973 | - | 2820 | WP_063113259.1 | conjugal transfer mating pair stabilization protein TraG | - |
| D0T88_RS24595 () | 80970..82343 | - | 1374 | WP_063113260.1 | conjugal transfer protein TraH | - |
| D0T88_RS24600 () | 82330..82755 | - | 426 | WP_074147410.1 | F-type conjugal transfer protein TrbF | - |
| D0T88_RS24605 () | 82709..83050 | - | 342 | WP_074147414.1 | P-type conjugative transfer protein TrbJ | - |
| D0T88_RS24610 () | 82980..83525 | - | 546 | WP_063113263.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| D0T88_RS24615 () | 83512..83793 | - | 282 | WP_063113264.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| D0T88_RS24620 () | 83850..84995 | + | 1146 | WP_063113265.1 | hypothetical protein | - |
| D0T88_RS24625 () | 85426..85782 | - | 357 | WP_063113266.1 | conjugal transfer protein TrbA | - |
| D0T88_RS24630 () | 85884..86264 | + | 381 | WP_001171554.1 | IS66 family insertion sequence hypothetical protein | - |
| D0T88_RS24635 () | 86261..86608 | + | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| D0T88_RS24640 () | 86658..88196 | + | 1539 | WP_137546056.1 | IS66-like element ISEc8 family transposase | - |
| D0T88_RS24645 () | 88364..88729 | - | 366 | WP_097763973.1 | hypothetical protein | - |
| D0T88_RS24650 () | 88743..89486 | - | 744 | WP_063113355.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| D0T88_RS24655 () | 89479..89736 | - | 258 | WP_063113354.1 | conjugal transfer protein TrbE | - |
| D0T88_RS24660 () | 89763..91613 | - | 1851 | WP_063113353.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| D0T88_RS24665 () | 91610..92032 | - | 423 | WP_063113352.1 | HNH endonuclease | - |
| D0T88_RS24670 () | 92058..92429 | - | 372 | WP_063113351.1 | hypothetical protein | - |
| D0T88_RS24675 () | 92432..93064 | - | 633 | WP_063113350.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| D0T88_RS24680 () | 93091..93608 | - | 518 | Protein_91 | hypothetical protein | - |
| D0T88_RS24685 () | 94007..94156 | - | 150 | Protein_92 | TraU family protein | - |
| D0T88_RS24690 () | 94160..94537 | - | 378 | WP_050516715.1 | hypothetical protein | - |
| D0T88_RS24695 () | 95333..95767 | - | 435 | WP_063113348.1 | hypothetical protein | - |
| D0T88_RS24700 () | 95889..96881 | - | 993 | WP_063113347.1 | conjugal transfer pilus assembly protein TraU | - |
| D0T88_RS24705 () | 96878..97510 | - | 633 | WP_063113346.1 | type-F conjugative transfer system protein TraW | - |
| D0T88_RS24710 () | 97507..97893 | - | 387 | WP_000099693.1 | type-F conjugative transfer system protein TrbI | - |
| D0T88_RS24715 () | 97890..100520 | - | 2631 | WP_063113345.1 | type IV secretion system protein TraC | - |
| D0T88_RS24720 () | 100651..100998 | - | 348 | WP_063113344.1 | hypothetical protein | - |
| D0T88_RS24725 () | 100995..101399 | - | 405 | WP_063113343.1 | hypothetical protein | - |
| D0T88_RS24730 () | 101396..101614 | - | 219 | WP_063113342.1 | hypothetical protein | - |
| D0T88_RS24735 () | 101694..102080 | - | 387 | WP_063113341.1 | hypothetical protein | - |
| D0T88_RS24740 () | 102077..102550 | - | 474 | WP_063113340.1 | hypothetical protein | - |
| D0T88_RS24745 () | 102543..102764 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| D0T88_RS24750 () | 102899..103414 | - | 516 | WP_063113339.1 | type IV conjugative transfer system lipoprotein TraV | - |
| D0T88_RS24755 () | 103411..103662 | - | 252 | WP_063113338.1 | conjugal transfer protein TrbG | - |
| D0T88_RS24760 () | 103655..103780 | - | 126 | WP_137516538.1 | conjugal transfer protein TrbD | - |
| D0T88_RS24765 () | 103787..104008 | - | 222 | WP_074147438.1 | conjugal transfer protein TrbD | - |
| D0T88_RS24770 () | 103962..104549 | - | 588 | WP_063113336.1 | conjugal transfer protein TraP | - |
| D0T88_RS24775 () | 104539..105969 | - | 1431 | WP_063113335.1 | conjugal transfer protein TraB | - |
| D0T88_RS24780 () | 105969..106673 | - | 705 | WP_149017459.1 | type-F conjugative transfer system secretin TraK | - |
| D0T88_RS24785 () | 106684..107250 | - | 567 | WP_063113334.1 | type IV conjugative transfer system protein TraE | - |
| D0T88_RS24790 () | 107272..107583 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| D0T88_RS24795 () | 107598..107963 | - | 366 | WP_021572189.1 | type IV conjugative transfer system pilin TraA | - |
| D0T88_RS24800 () | 107997..108224 | - | 228 | WP_074147437.1 | conjugal transfer relaxosome protein TraY | - |
| D0T88_RS24805 () | 108362..109033 | - | 672 | WP_063113333.1 | conjugal transfer transcriptional regulator TraJ | - |
| D0T88_RS24810 () | 109228..109611 | - | 384 | WP_021572187.1 | relaxosome protein TraM | - |
| D0T88_RS24815 () | 109889..110536 | + | 648 | WP_137588984.1 | transglycosylase SLT domain-containing protein | - |
| D0T88_RS24820 () | 110832..111653 | - | 822 | Protein_119 | DUF945 domain-containing protein | - |
| D0T88_RS24825 () | 111772..112059 | - | 288 | WP_000107543.1 | hypothetical protein | - |
| D0T88_RS24830 () | 112848..113039 | - | 192 | WP_001027514.1 | hypothetical protein | - |
| D0T88_RS24835 () | 113036..113500 | - | 465 | WP_063113332.1 | DUF1380 family protein | - |
| D0T88_RS24840 () | 113500..113802 | - | 303 | WP_074147441.1 | antirestriction protein | - |
| D0T88_RS24845 () | 114338..115108 | - | 771 | WP_063113330.1 | hypothetical protein | - |
| D0T88_RS24850 () | 115153..115707 | - | 555 | WP_077880571.1 | DUF1380 family protein | - |
| D0T88_RS24855 () | 115601..115822 | - | 222 | WP_063113328.1 | hypothetical protein | - |
| D0T88_RS24860 () | 115823..116506 | - | 684 | WP_063113327.1 | DNA methylase | - |
| D0T88_RS24865 () | 116583..116894 | - | 312 | WP_010891263.1 | hypothetical protein | - |
| D0T88_RS24870 () | 116891..117793 | - | 903 | WP_077875977.1 | DUF1281 domain-containing protein | - |
| D0T88_RS24875 () | 118211..118333 | + | 123 | Protein_130 | DinI family protein | - |
| D0T88_RS24880 () | 118474..118866 | - | 393 | WP_161396214.1 | plasmid partitioning/stability family protein | - |
| D0T88_RS24885 () | 118870..119844 | - | 975 | WP_033559514.1 | StbA family protein | - |
| D0T88_RS24890 () | 120086..120460 | - | 375 | WP_033559513.1 | hypothetical protein | - |
| D0T88_RS24895 () | 120460..121092 | - | 633 | WP_033559512.1 | ParA family protein | - |
| D0T88_RS24900 () | 121940..122695 | - | 756 | WP_000807692.1 | replication initiation protein RepE | - |
| D0T88_RS24905 () | 123253..124059 | - | 807 | WP_063113326.1 | site-specific integrase | - |
| D0T88_RS24910 () | 124060..124365 | - | 306 | WP_063113325.1 | type II toxin-antitoxin system toxin CcdB | - |
| D0T88_RS24915 () | 124367..124585 | - | 219 | WP_063113324.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| D0T88_RS24920 () | 125173..125403 | + | 231 | WP_063113323.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| D0T88_RS24925 () | 125400..125816 | + | 417 | WP_063113322.1 | type II toxin-antitoxin system VapC family toxin | - |
| D0T88_RS24930 () | 126032..126698 | - | 667 | Protein_141 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|