MGE detailed information
MGE type: Prophage MGE length: 63143 bp
Accession: NZ_CP031706 Location: 2585193..2648335 Organism: Escherichia coli strain R1 Replicon: chromosome
Accession: NZ_CP031706 Location: 2585193..2648335 Organism: Escherichia coli strain R1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0T88_RS12440 () | 2581048..2581848 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| D0T88_RS12445 () | 2581861..2582712 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| D0T88_RS12450 () | 2582767..2583225 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| D0T88_RS12455 () | 2583655..2584221 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| D0T88_RS12460 () | 2584218..2585027 | - | 810 | WP_000010129.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| D0T88_RS12465 () | 2585193..2585402 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| D0T88_RS12470 () | 2585415..2585558 | - | 144 | WP_001295496.1 | YobF family protein | - |
| D0T88_RS12475 () | 2586228..2586515 | - | 288 | WP_001006865.1 | YebO family protein | - |
| D0T88_RS12480 () | 2586590..2586733 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| D0T88_RS12485 () | 2586892..2587131 | + | 240 | WP_001211011.1 | hypothetical protein | - |
| D0T88_RS12490 () | 2587274..2588065 | - | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| D0T88_RS12495 () | 2588242..2589615 | + | 1374 | WP_001127216.1 | MFS transporter | - |
| D0T88_RS12500 () | 2589661..2590542 | - | 882 | WP_000984517.1 | protease HtpX | - |
| D0T88_RS12505 () | 2590734..2592782 | - | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
| D0T88_RS12510 () | 2592802..2593500 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| D0T88_RS12515 () | 2593597..2594094 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| D0T88_RS12520 () | 2594224..2595507 | + | 1284 | WP_063113665.1 | membrane integrity lipid transport subunit YebS | - |
| D0T88_RS12525 () | 2595476..2598109 | + | 2634 | WP_001299674.1 | hypothetical protein | VF |
| D0T88_RS12530 () | 2598189..2599628 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D0T88_RS12535 () | 2599746..2599982 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D0T88_RS12540 () | 2600087..2600278 | + | 192 | WP_001296140.1 | YebW family protein | - |
| D0T88_RS12545 () | 2600279..2600935 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| D0T88_RS12550 () | 2601400..2601492 | - | 93 | Protein_2453 | helix-turn-helix domain-containing protein | - |
| D0T88_RS12555 () | 2601486..2601593 | + | 108 | WP_089695349.1 | tail fiber assembly protein | - |
| D0T88_RS12560 () | 2601565..2601975 | - | 411 | WP_155849709.1 | tail fiber assembly protein | - |
| D0T88_RS12565 () | 2601975..2603060 | - | 1086 | WP_097408389.1 | hypothetical protein | - |
| D0T88_RS12570 () | 2603042..2603722 | - | 681 | WP_000049950.1 | DUF2612 domain-containing protein | - |
| D0T88_RS12575 () | 2603719..2604918 | - | 1200 | WP_021527586.1 | baseplate J/gp47 family protein | - |
| D0T88_RS12580 () | 2604918..2605271 | - | 354 | WP_001270632.1 | hypothetical protein | - |
| D0T88_RS12585 () | 2605271..2606023 | - | 753 | WP_155849654.1 | translation initiation factor IF-2 | - |
| D0T88_RS12590 () | 2606083..2606322 | - | 240 | WP_000466689.1 | DUF4282 domain-containing protein | - |
| D0T88_RS12595 () | 2606462..2606797 | - | 336 | WP_053901684.1 | hypothetical protein | - |
| D0T88_RS12600 () | 2606794..2607825 | - | 1032 | WP_061892296.1 | hypothetical protein | - |
| D0T88_RS12605 () | 2607828..2608130 | - | 303 | WP_061892295.1 | hypothetical protein | - |
| D0T88_RS12610 () | 2608134..2608784 | - | 651 | WP_155849655.1 | hypothetical protein | - |
| D0T88_RS12615 () | 2608784..2610790 | - | 2007 | WP_155849656.1 | lytic transglycosylase catalytic | - |
| D0T88_RS12620 () | 2610968..2611420 | - | 453 | WP_155849657.1 | hypothetical protein | - |
| D0T88_RS12625 () | 2611424..2611864 | - | 441 | WP_000109249.1 | DUF3277 family protein | - |
| D0T88_RS12630 () | 2611875..2613020 | - | 1146 | WP_155849658.1 | DUF3383 family protein | - |
| D0T88_RS12635 () | 2613024..2613587 | - | 564 | WP_050194103.1 | hypothetical protein | - |
| D0T88_RS12640 () | 2613562..2613951 | - | 390 | WP_001142484.1 | hypothetical protein | - |
| D0T88_RS12645 () | 2613938..2614492 | - | 555 | WP_000008731.1 | hypothetical protein | - |
| D0T88_RS12650 () | 2614489..2614896 | - | 408 | WP_000042171.1 | DUF4054 domain-containing protein | - |
| D0T88_RS12655 () | 2614862..2615230 | - | 369 | WP_001040696.1 | hypothetical protein | - |
| D0T88_RS12660 () | 2615271..2616212 | - | 942 | WP_155849659.1 | DUF2184 domain-containing protein | - |
| D0T88_RS12665 () | 2616224..2616730 | - | 507 | WP_097401208.1 | hypothetical protein | - |
| D0T88_RS12670 () | 2616734..2617954 | - | 1221 | WP_000873186.1 | DUF2213 domain-containing protein | - |
| D0T88_RS12675 () | 2617969..2618703 | - | 735 | WP_155849670.1 | minor capsid protein | - |
| D0T88_RS12680 () | 2618594..2620060 | - | 1467 | WP_155849660.1 | DUF1073 domain-containing protein | - |
| D0T88_RS12685 () | 2620060..2621682 | - | 1623 | WP_155849661.1 | TerL protein | - |
| D0T88_RS12690 () | 2621685..2622236 | - | 552 | WP_061892288.1 | terminase small subunit | - |
| D0T88_RS12695 () | 2622261..2622533 | + | 273 | WP_155849662.1 | hypothetical protein | - |
| D0T88_RS12700 () | 2622850..2623257 | - | 408 | WP_061892287.1 | hypothetical protein | - |
| D0T88_RS12705 () | 2623316..2623777 | - | 462 | WP_001519804.1 | lysis protein | - |
| D0T88_RS12710 () | 2623774..2624250 | - | 477 | WP_001737241.1 | glycoside hydrolase family protein | - |
| D0T88_RS12715 () | 2624254..2624595 | - | 342 | WP_000781789.1 | phage holin, lambda family | - |
| D0T88_RS12720 () | 2624813..2625091 | + | 279 | WP_001519807.1 | hypothetical protein | - |
| D0T88_RS12725 () | 2625077..2625307 | - | 231 | WP_000675202.1 | hypothetical protein | - |
| D0T88_RS12730 () | 2625445..2626056 | - | 612 | WP_001519808.1 | ORF6N domain-containing protein | - |
| D0T88_RS12735 () | 2626327..2626881 | - | 555 | WP_155849663.1 | DUF1133 family protein | - |
| D0T88_RS12740 () | 2626878..2627168 | - | 291 | WP_055278142.1 | DUF1364 domain-containing protein | - |
| D0T88_RS12745 () | 2627168..2627767 | - | 600 | WP_097764128.1 | DUF1367 family protein | - |
| D0T88_RS12750 () | 2628236..2628448 | - | 213 | WP_032316928.1 | type I toxin-antitoxin system Hok family toxin | - |
| D0T88_RS12755 () | 2628654..2630015 | + | 1362 | WP_155849665.1 | nucleotidyltransferase | - |
| D0T88_RS12760 () | 2630021..2630602 | + | 582 | WP_023568497.1 | SLATT domain-containing protein | - |
| D0T88_RS12765 () | 2630791..2631212 | - | 422 | Protein_2496 | DUF977 family protein | - |
| D0T88_RS12770 () | 2631228..2631989 | - | 762 | WP_123017607.1 | DUF1627 domain-containing protein | - |
| D0T88_RS12775 () | 2632012..2632758 | - | 747 | WP_023568500.1 | IS21 family transposase ISCsa9 | Transposase |
| D0T88_RS12780 () | 2632765..2633622 | - | 858 | WP_023568501.1 | DUF1376 domain-containing protein | - |
| D0T88_RS12785 () | 2633635..2634057 | - | 423 | WP_023568502.1 | hypothetical protein | - |
| D0T88_RS12790 () | 2634080..2634376 | - | 297 | WP_001551044.1 | toxin YdaS | - |
| D0T88_RS12795 () | 2634500..2634976 | + | 477 | WP_001551043.1 | DNA-binding transcriptional repressor RacR | - |
| D0T88_RS12800 () | 2635294..2635581 | + | 288 | Protein_2503 | hypothetical protein | - |
| D0T88_RS12805 () | 2636050..2636271 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| D0T88_RS12810 () | 2636265..2636423 | + | 159 | WP_170999272.1 | hypothetical protein | - |
| D0T88_RS12815 () | 2636516..2636791 | + | 276 | WP_001737258.1 | bacteriophage protein | - |
| D0T88_RS12820 () | 2636891..2638888 | + | 1998 | WP_155849666.1 | exodeoxyribonuclease VIII | - |
| D0T88_RS12825 () | 2638866..2639162 | + | 297 | WP_001484906.1 | host-nuclease inhibitor protein Gam | - |
| D0T88_RS12830 () | 2639168..2639953 | + | 786 | WP_001484907.1 | phage recombination protein Bet | - |
| D0T88_RS12835 () | 2639950..2640630 | + | 681 | WP_000186708.1 | YqaJ viral recombinase family protein | - |
| D0T88_RS12840 () | 2640663..2640857 | + | 195 | WP_001307771.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| D0T88_RS12845 () | 2640850..2641038 | + | 189 | WP_024165285.1 | DUF1187 family protein | - |
| - () | 2640856..2641034 | - | 179 | NuclAT_0 | - | - |
| - () | 2640856..2641034 | - | 179 | NuclAT_0 | - | - |
| - () | 2640856..2641034 | - | 179 | NuclAT_0 | - | - |
| - () | 2640856..2641034 | - | 179 | NuclAT_0 | - | - |
| D0T88_RS12850 () | 2641145..2641426 | + | 282 | WP_001311878.1 | excisionase | - |
| D0T88_RS12855 () | 2641392..2642468 | + | 1077 | WP_001189085.1 | hypothetical protein ; Integrase | Integrase |
| - () | 2642599..2642833 | + | 235 | - | - | Antitoxin Detail |
| - () | 2642600..2642703 | - | 104 | - | - | Toxin Detail |
| D0T88_RS12860 () | 2642861..2643202 | - | 342 | WP_000976492.1 | YebY family protein | - |
| D0T88_RS12865 () | 2643215..2644087 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| D0T88_RS12870 () | 2644091..2644465 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| D0T88_RS12875 () | 2644604..2644834 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D0T88_RS12880 () | 2644936..2645592 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| D0T88_RS12885 () | 2645616..2646278 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| D0T88_RS12890 () | 2646275..2648335 | - | 2061 | WP_000936956.1 | oligopeptidase B | - |
| D0T88_RS12895 () | 2648544..2649203 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| D0T88_RS12900 () | 2649529..2649885 | - | 357 | WP_001295500.1 | protein YebF | - |
| D0T88_RS12905 () | 2649952..2650242 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| D0T88_RS12910 () | 2650376..2651554 | + | 1179 | WP_000173491.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| D0T88_RS12915 () | 2651610..2652251 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|