MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 39062 bp
Accession: NZ_CP031607 Location: 2635082..2674143 Organism: Xanthomonas hortorum strain VT106 Replicon: chromosome
Accession: NZ_CP031607 Location: 2635082..2674143 Organism: Xanthomonas hortorum strain VT106 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYQ48_RS11345 () | 2631351..2632307 | - | 957 | WP_154844404.1 | IS30 family transposase | - |
| DYQ48_RS11350 () | 2632415..2633193 | - | 779 | Protein_2128 | IS5 family transposase | - |
| DYQ48_RS11355 () | 2633527..2633805 | + | 279 | WP_154844652.1 | DUF2285 domain-containing protein | - |
| DYQ48_RS11360 () | 2633817..2634116 | + | 300 | WP_168952532.1 | XRE family transcriptional regulator | - |
| DYQ48_RS11365 () | 2634113..2634301 | + | 189 | WP_154844654.1 | hypothetical protein | - |
| DYQ48_RS11370 () | 2634371..2634628 | - | 258 | WP_154844655.1 | hypothetical protein | - |
| DYQ48_RS11375 () | 2634641..2634886 | - | 246 | WP_154844656.1 | type I toxin-antitoxin system ptaRNA1 family toxin | - |
| DYQ48_RS11380 () | 2634953..2636425 | - | 1473 | WP_154844657.1 | P-type conjugative transfer protein TrbL | - |
| DYQ48_RS11385 () | 2636422..2636652 | - | 231 | WP_154844658.1 | entry exclusion lipoprotein TrbK | - |
| DYQ48_RS11390 () | 2636665..2637447 | - | 783 | WP_154844659.1 | P-type conjugative transfer protein TrbJ | - |
| DYQ48_RS11395 () | 2637604..2638023 | - | 420 | WP_104591581.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DYQ48_RS11400 () | 2638020..2638274 | - | 255 | WP_154844660.1 | Arc family DNA-binding protein | Antitoxin Detail |
| DYQ48_RS11405 () | 2638686..2638967 | - | 282 | WP_154844661.1 | TraK family protein | - |
| DYQ48_RS11410 () | 2639585..2640472 | - | 888 | WP_180334452.1 | replication protein C | - |
| DYQ48_RS11415 () | 2640444..2641322 | - | 879 | WP_154844662.1 | helicase RepA family protein | - |
| DYQ48_RS11420 () | 2641326..2641559 | - | 234 | WP_003472509.1 | hypothetical protein | - |
| DYQ48_RS11425 () | 2641641..2642630 | + | 990 | WP_104591591.1 | LuxR family transcriptional regulator | - |
| DYQ48_RS11430 () | 2642710..2642955 | + | 246 | WP_104591592.1 | AlpA family phage regulatory protein | - |
| DYQ48_RS11435 () | 2643287..2643466 | - | 180 | WP_154845059.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DYQ48_RS23100 () | 2643897..2644160 | - | 264 | WP_168952531.1 | hypothetical protein | - |
| DYQ48_RS11450 () | 2644266..2645368 | + | 1103 | Protein_2147 | IS3 family transposase IS1404 | Transposase |
| DYQ48_RS11455 () | 2645676..2646695 | - | 1020 | WP_154844664.1 | AAA family ATPase | - |
| DYQ48_RS11465 () | 2647752..2648030 | - | 279 | WP_078589359.1 | hypothetical protein | - |
| DYQ48_RS11475 () | 2648315..2648779 | + | 465 | WP_154844666.1 | hypothetical protein | - |
| DYQ48_RS11480 () | 2648776..2649354 | + | 579 | WP_154844667.1 | M48 family metalloprotease | - |
| DYQ48_RS11485 () | 2649320..2649502 | + | 183 | WP_078589436.1 | hypothetical protein | - |
| DYQ48_RS11490 () | 2649783..2650985 | - | 1203 | WP_154844668.1 | hypothetical protein ; Integrase | Integrase |
| DYQ48_RS11500 () | 2651293..2652858 | - | 1566 | WP_006451190.1 | glutamine-hydrolyzing GMP synthase | - |
| DYQ48_RS11505 () | 2652985..2654442 | - | 1458 | WP_074057418.1 | IMP dehydrogenase | - |
| DYQ48_RS11510 () | 2654535..2655419 | - | 885 | WP_074057417.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| DYQ48_RS11515 () | 2655469..2655789 | + | 321 | WP_074057416.1 | DUF1244 domain-containing protein | - |
| DYQ48_RS11520 () | 2655919..2657775 | - | 1857 | WP_074057415.1 | monovalent cation:proton antiporter-2 (CPA2) family protein | - |
| DYQ48_RS11525 () | 2657952..2658845 | - | 894 | WP_095574791.1 | Bifunctional protein GlmU | VF |
| DYQ48_RS11530 () | 2658845..2660752 | - | 1908 | WP_006451183.1 | GDP-L-fucose synthase | VF |
| DYQ48_RS11535 () | 2660766..2661740 | - | 975 | WP_006451182.1 | Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase | VF |
| DYQ48_RS11540 () | 2661740..2662918 | - | 1179 | WP_006451181.1 | lipopolysaccharide assembly protein LapB | - |
| DYQ48_RS11545 () | 2662925..2663230 | - | 306 | WP_006451180.1 | LapA family protein | - |
| DYQ48_RS11550 () | 2663298..2663609 | - | 312 | WP_006451179.1 | integration host factor subunit beta | - |
| DYQ48_RS11555 () | 2663699..2665387 | - | 1689 | WP_023904145.1 | 30S ribosomal protein S1 | - |
| DYQ48_RS11560 () | 2665572..2666255 | - | 684 | WP_074057414.1 | (d)CMP kinase | - |
| DYQ48_RS11565 () | 2666428..2666553 | + | 126 | WP_005913193.1 | type B 50S ribosomal protein L36 | - |
| DYQ48_RS11570 () | 2666812..2667147 | + | 336 | WP_006451808.1 | hypothetical protein | - |
| DYQ48_RS11575 () | 2667239..2668273 | + | 1035 | WP_074057413.1 | agmatine deiminase family protein | - |
| DYQ48_RS11580 () | 2668353..2669237 | + | 885 | WP_154844669.1 | carbon-nitrogen hydrolase | - |
| DYQ48_RS11585 () | 2669242..2669769 | + | 528 | WP_006451811.1 | GNAT family N-acetyltransferase | - |
| DYQ48_RS11590 () | 2669774..2670994 | + | 1221 | WP_172839267.1 | TraB/GumN family protein | - |
| DYQ48_RS11595 () | 2671127..2672038 | - | 912 | WP_074058811.1 | endonuclease/exonuclease/phosphatase family protein | - |
| DYQ48_RS11600 () | 2672104..2675241 | - | 3138 | WP_167387177.1 | discoidin domain-containing protein | - |
| DYQ48_RS11605 () | 2675268..2676104 | - | 837 | WP_074057412.1 | carbohydrate ABC transporter permease | - |
| DYQ48_RS11610 () | 2676101..2676985 | - | 885 | WP_006451816.1 | sugar ABC transporter permease | - |
| DYQ48_RS11615 () | 2676982..2678364 | - | 1383 | WP_006451817.1 | sugar ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|