MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 100922 bp
Accession: NZ_CP031606 Location: 1918083..2019004 Organism: Pseudomonas sp. phDV1 Replicon: chromosome
Accession: NZ_CP031606 Location: 1918083..2019004 Organism: Pseudomonas sp. phDV1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DZC76_RS09100 () | 1914586..1914858 | + | 273 | WP_003282502.1 | DNA-binding protein HU-beta | - |
| DZC76_RS09105 () | 1915048..1916895 | + | 1848 | WP_004424145.1 | SurA N-terminal domain-containing protein | - |
| DZC76_RS23095 () | 1917074..1917166 | + | 93 | Protein_1740 | IS66 family insertion sequence element accessory protein TnpB | - |
| DZC76_RS23100 () | 1917161..1917298 | + | 138 | Protein_1741 | WYL domain-containing protein | - |
| DZC76_RS09115 () | 1917295..1918046 | - | 752 | Protein_1742 | ATP-binding protein | - |
| DZC76_RS09120 () | 1918064..1919578 | - | 1515 | WP_116618462.1 | IS21 family transposase | - |
| DZC76_RS09130 () | 1919904..1920827 | + | 924 | WP_170961134.1 | hypothetical protein | - |
| DZC76_RS09135 () | 1920952..1921773 | + | 822 | WP_104726998.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| DZC76_RS09140 () | 1921757..1922692 | + | 936 | WP_116618464.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| DZC76_RS09145 () | 1923006..1923293 | - | 288 | WP_003116607.1 | HigA family addiction module antidote protein | - |
| DZC76_RS09150 () | 1923311..1923589 | - | 279 | WP_019339397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DZC76_RS09155 () | 1923685..1923918 | - | 234 | WP_100549554.1 | DUF2274 domain-containing protein | - |
| DZC76_RS09160 () | 1923915..1925180 | - | 1266 | WP_100549553.1 | TrbI/VirB10 family protein | - |
| DZC76_RS09165 () | 1925183..1926169 | - | 987 | WP_104727886.1 | P-type conjugative transfer protein TrbG | - |
| DZC76_RS09170 () | 1926166..1926873 | - | 708 | WP_100549551.1 | conjugal transfer protein TrbF | - |
| DZC76_RS09175 () | 1926886..1928046 | - | 1161 | WP_100549550.1 | P-type conjugative transfer protein TrbL | - |
| DZC76_RS09180 () | 1928043..1928228 | - | 186 | WP_100549549.1 | hypothetical protein | - |
| DZC76_RS09185 () | 1928241..1928974 | - | 734 | Protein_1755 | P-type conjugative transfer protein TrbJ | - |
| DZC76_RS09190 () | 1928971..1931400 | - | 2430 | WP_104727882.1 | conjugal transfer protein TrbE | - |
| DZC76_RS09195 () | 1931411..1931683 | - | 273 | WP_003116617.1 | VirB3 family type IV secretion system protein | - |
| DZC76_RS09200 () | 1931680..1932021 | - | 342 | WP_104727880.1 | TrbC/VirB2 family protein | - |
| DZC76_RS09205 () | 1931993..1932961 | - | 969 | WP_104727878.1 | Type IV secretion system protein PtlH | VF |
| DZC76_RS09210 () | 1933021..1933455 | - | 435 | WP_104727876.1 | CopG family transcriptional regulator | - |
| DZC76_RS09215 () | 1933452..1935443 | - | 1992 | WP_104727874.1 | Conjugal transfer protein TraG | VF |
| DZC76_RS09220 () | 1935879..1936823 | + | 945 | WP_170961164.1 | chromate resistance protein | - |
| DZC76_RS09225 () | 1936816..1938177 | + | 1362 | WP_104727872.1 | chromate efflux transporter | - |
| DZC76_RS09230 () | 1938189..1938512 | + | 324 | WP_104727870.1 | sulfurtransferase | - |
| DZC76_RS09235 () | 1938526..1938978 | + | 453 | WP_116618466.1 | chromate resistance protein | - |
| DZC76_RS09240 () | 1939010..1939717 | - | 708 | WP_074860978.1 | conjugal transfer protein TraX | - |
| DZC76_RS09245 () | 1939714..1940154 | - | 441 | WP_116618468.1 | DedA family protein | - |
| DZC76_RS09250 () | 1940156..1941259 | - | 1104 | WP_116618470.1 | nickel/cobalt efflux transporter RcnA | - |
| DZC76_RS09255 () | 1941266..1941553 | - | 288 | WP_074860967.1 | metal-sensing transcriptional repressor | - |
| DZC76_RS09260 () | 1941664..1942023 | + | 360 | WP_116618472.1 | hypothetical protein | - |
| DZC76_RS09265 () | 1942070..1942807 | + | 738 | WP_116618474.1 | HupE/UreJ family protein | - |
| DZC76_RS09270 () | 1942819..1943493 | + | 675 | WP_116618476.1 | transmembrane anchor protein | - |
| DZC76_RS09275 () | 1943953..1944648 | - | 696 | WP_116618478.1 | RES family NAD+ phosphorylase | - |
| DZC76_RS09280 () | 1944648..1945055 | - | 408 | WP_090337728.1 | hypothetical protein | - |
| DZC76_RS09285 () | 1945141..1945407 | - | 267 | WP_104730436.1 | EexN family lipoprotein | - |
| DZC76_RS09290 () | 1945407..1946332 | - | 926 | Protein_1776 | HTH-type transcriptional regulator GltC | VF |
| DZC76_RS09295 () | 1946346..1947545 | - | 1200 | WP_104730437.1 | MFS transporter | - |
| DZC76_RS09300 () | 1947631..1949484 | - | 1854 | WP_100549522.1 | Asparagine synthetase [glutamine-hydrolyzing] 3 | VF |
| DZC76_RS09305 () | 1949507..1950577 | - | 1071 | WP_104730439.1 | Gfo/Idh/MocA family oxidoreductase | - |
| DZC76_RS09310 () | 1950574..1951077 | - | 504 | WP_104730440.1 | GNAT family N-acetyltransferase | - |
| DZC76_RS09315 () | 1951079..1952311 | - | 1233 | WP_104730441.1 | 5-aminolevulinate synthase | - |
| DZC76_RS09320 () | 1952468..1953322 | + | 855 | WP_104730442.1 | helix-turn-helix transcriptional regulator | - |
| DZC76_RS09325 () | 1953340..1953569 | - | 230 | Protein_1783 | DUF3363 domain-containing protein | - |
| DZC76_RS09330 () | 1953697..1954611 | - | 915 | WP_104730443.1 | HTH-type transcriptional regulator PerR | VF |
| DZC76_RS09335 () | 1954805..1955656 | + | 852 | WP_104730444.1 | transketolase | - |
| DZC76_RS09340 () | 1955653..1956651 | + | 999 | WP_104730445.1 | transketolase family protein | - |
| DZC76_RS09345 () | 1956717..1957481 | + | 765 | WP_104730446.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| DZC76_RS09350 () | 1957589..1958563 | + | 975 | WP_104730447.1 | TRAP transporter substrate-binding protein | - |
| DZC76_RS09355 () | 1958560..1959126 | + | 567 | WP_017677576.1 | TRAP transporter small permease | - |
| DZC76_RS09360 () | 1959123..1960382 | + | 1260 | WP_104730448.1 | TRAP transporter large permease | - |
| DZC76_RS09365 () | 1960432..1961316 | + | 885 | WP_104730449.1 | NAD(P)-dependent oxidoreductase | - |
| DZC76_RS09370 () | 1961359..1962234 | + | 876 | WP_104730450.1 | AEC family transporter | - |
| DZC76_RS09380 () | 1962557..1964506 | - | 1950 | WP_104730451.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| DZC76_RS09385 () | 1964857..1965384 | - | 528 | WP_100550025.1 | S26 family signal peptidase | - |
| DZC76_RS09390 () | 1965381..1965623 | - | 243 | WP_100550026.1 | hypothetical protein | - |
| DZC76_RS09395 () | 1965620..1966258 | - | 639 | WP_100550027.1 | Sporulation initiation inhibitor protein Soj | VF |
| DZC76_RS09400 () | 1966503..1967330 | - | 828 | WP_100550028.1 | replication initiator protein A | - |
| DZC76_RS09405 () | 1967342..1967713 | - | 372 | WP_116618480.1 | helix-turn-helix domain-containing protein | - |
| DZC76_RS09410 () | 1968222..1968734 | - | 513 | WP_104730453.1 | antirestriction protein ArdA | - |
| DZC76_RS09415 () | 1969146..1971260 | + | 2115 | WP_100550030.1 | hypothetical protein | - |
| DZC76_RS09420 () | 1971441..1973681 | - | 2241 | WP_116618482.1 | ankyrin repeat domain-containing protein | - |
| DZC76_RS09425 () | 1973809..1975323 | + | 1515 | WP_003464926.1 | IS21 family transposase ISPpu7 | Transposase |
| DZC76_RS09430 () | 1975341..1976096 | + | 756 | WP_019437637.1 | IS21 family transposase ISUnCu3 | Transposase |
| DZC76_RS09435 () | 1976610..1977413 | - | 804 | WP_003459721.1 | IS21 family transposase ISPst3 | Transposase |
| DZC76_RS09440 () | 1977406..1978905 | - | 1500 | WP_116618484.1 | IS21 family transposase ISPst3 | Transposase |
| DZC76_RS09450 () | 1979113..1979460 | - | 348 | WP_108232763.1 | hypothetical protein | - |
| DZC76_RS09455 () | 1979457..1979726 | - | 270 | WP_116618488.1 | hypothetical protein | - |
| DZC76_RS09465 () | 1980584..1981015 | + | 432 | WP_003460108.1 | IS200-IS605 family transposase ISPlu2 | Transposase |
| DZC76_RS09470 () | 1981367..1983073 | + | 1707 | WP_116618492.1 | N-6 DNA methylase | - |
| DZC76_RS09475 () | 1983076..1985397 | + | 2322 | WP_116618494.1 | sensor histidine kinase | - |
| DZC76_RS09480 () | 1985384..1986232 | + | 849 | WP_116618496.1 | hypothetical protein | - |
| DZC76_RS09485 () | 1986210..1986908 | + | 699 | Protein_1812 | IS1182 family transposase ISThsp16 | Transposase |
| DZC76_RS09490 () | 1986950..1988497 | - | 1548 | WP_116618498.1 | IS66 family transposase ISPpu13 | Transposase |
| DZC76_RS09495 () | 1988517..1988873 | - | 357 | WP_116620647.1 | IS66 family transposase ISPsy34 | Transposase |
| DZC76_RS09500 () | 1988961..1989623 | + | 663 | Protein_1815 | IS1182 family transposase ISThsp16 | Transposase |
| DZC76_RS22930 () | 1990195..1990944 | + | 750 | WP_162884220.1 | hypothetical protein | - |
| DZC76_RS09515 () | 1991423..1992178 | - | 756 | WP_116618504.1 | IS21 family transposase ISUnCu3 | Transposase |
| DZC76_RS09520 () | 1992196..1993710 | - | 1515 | WP_019437638.1 | IS21 family transposase ISPpu7 | Transposase |
| DZC76_RS09525 () | 1994231..1994560 | + | 330 | Protein_1819 | group II intron reverse transcriptase/maturase | - |
| DZC76_RS09530 () | 1994893..1995165 | + | 273 | WP_003461245.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| DZC76_RS09535 () | 1995153..1995446 | + | 294 | WP_003461247.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DZC76_RS09540 () | 1995440..1996114 | - | 675 | Protein_1822 | hypothetical protein ; Integrase | Integrase |
| DZC76_RS09545 () | 1996043..1996447 | + | 405 | Protein_1823 | DUF262 domain-containing protein | - |
| DZC76_RS09555 () | 1996626..1997915 | + | 1290 | WP_116618506.1 | FAD-binding oxidoreductase | - |
| DZC76_RS09560 () | 1997932..1998489 | + | 558 | WP_021489866.1 | helix-turn-helix domain-containing protein | - |
| DZC76_RS09565 () | 1998519..1999865 | + | 1347 | WP_100547961.1 | glutamine synthetase family protein | - |
| DZC76_RS09570 () | 1999889..2001268 | + | 1380 | WP_116618508.1 | aspartate aminotransferase family protein | - |
| DZC76_RS09575 () | 2001597..2002451 | - | 855 | WP_116618511.1 | Transposon Tn10 TetD protein | VF |
| DZC76_RS09580 () | 2002777..2003748 | - | 972 | WP_003461270.1 | XdhC family protein | - |
| DZC76_RS09585 () | 2004025..2004405 | - | 381 | Protein_1830 | IS5 family transposase ISPa67 | Transposase |
| DZC76_RS09590 () | 2004613..2005854 | - | 1242 | WP_116618513.1 | benzoate/H(+) symporter BenE family transporter | - |
| DZC76_RS09595 () | 2005938..2006741 | - | 804 | WP_074860624.1 | enoyl-CoA hydratase/isomerase family protein | - |
| DZC76_RS09600 () | 2006769..2008301 | - | 1533 | WP_116618515.1 | AMP-binding protein | - |
| DZC76_RS09605 () | 2008301..2008807 | - | 507 | WP_003461286.1 | (2Fe-2S)-binding protein | - |
| DZC76_RS09610 () | 2008810..2009616 | - | 807 | WP_116618517.1 | FAD binding domain-containing protein | - |
| DZC76_RS09615 () | 2009613..2012615 | - | 3003 | WP_116618519.1 | molybdopterin-dependent oxidoreductase | - |
| DZC76_RS09620 () | 2012870..2013052 | - | 183 | Protein_1837 | DUF2790 domain-containing protein | - |
| DZC76_RS09625 () | 2013115..2013540 | - | 426 | WP_021445631.1 | organic hydroperoxide resistance protein | - |
| DZC76_RS09630 () | 2014004..2014456 | - | 453 | WP_116618521.1 | MarR family transcriptional regulator | - |
| DZC76_RS09635 () | 2014530..2014847 | - | 318 | WP_003461298.1 | hypothetical protein | - |
| DZC76_RS09640 () | 2014865..2015515 | - | 651 | WP_116618523.1 | DUF480 domain-containing protein | - |
| DZC76_RS09645 () | 2015564..2016130 | - | 567 | WP_045733162.1 | TetR/AcrR family transcriptional regulator | - |
| DZC76_RS09650 () | 2016220..2016951 | + | 732 | WP_116618525.1 | SDR family oxidoreductase | - |
| DZC76_RS09655 () | 2016995..2017588 | + | 594 | WP_075747194.1 | 2-hydroxychromene-2-carboxylate isomerase | - |
| DZC76_RS09660 () | 2017657..2017872 | + | 216 | WP_003243834.1 | DUF3820 family protein | - |
| DZC76_RS09665 () | 2017959..2018285 | + | 327 | Protein_1846 | transposase | - |
| DZC76_RS09670 () | 2018175..2018942 | - | 768 | WP_116618527.1 | IS21 family transposase ISUnCu3 | Transposase |
| DZC76_RS22935 () | 2018960..2019103 | - | 144 | WP_156157174.1 | hypothetical protein | - |
| DZC76_RS09680 () | 2019266..2019574 | + | 309 | Protein_1849 | IS21 family transposase | - |
| DZC76_RS09685 () | 2019637..2019993 | - | 357 | WP_074855975.1 | 6-carboxytetrahydropterin synthase QueD | - |
| DZC76_RS09690 () | 2020106..2021185 | - | 1080 | WP_074855978.1 | hypothetical protein | - |
| DZC76_RS09695 () | 2021331..2021639 | + | 309 | WP_003461318.1 | PepSY domain-containing protein | - |
| DZC76_RS09700 () | 2021639..2021953 | + | 315 | WP_003461320.1 | PepSY domain-containing protein | - |
| DZC76_RS09705 () | 2021953..2022621 | + | 669 | WP_003461322.1 | response regulator transcription factor | - |
| DZC76_RS09710 () | 2022618..2023931 | + | 1314 | WP_104729706.1 | HAMP domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|