MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 18373 bp
Accession: NZ_CP031505 Location: 1091377..1109749 Organism: Dickeya fangzhongdai strain LN1 Replicon: chromosome
Accession: NZ_CP031505 Location: 1091377..1109749 Organism: Dickeya fangzhongdai strain LN1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYD82_RS05005 () | 1087002..1087808 | + | 807 | WP_100849029.1 | oxidoreductase | - |
| DYD82_RS05010 () | 1088047..1088414 | + | 368 | Protein_970 | GNAT family N-acetyltransferase | - |
| DYD82_RS05015 () | 1088652..1089794 | + | 1143 | WP_100849030.1 | Fic family protein | - |
| DYD82_RS05020 () | 1089778..1089927 | - | 150 | WP_167389533.1 | hypothetical protein | - |
| DYD82_RS05025 () | 1090113..1090331 | - | 219 | WP_049854444.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| DYD82_RS05030 () | 1090346..1090594 | - | 249 | WP_039691666.1 | helix-turn-helix domain-containing protein | - |
| DYD82_RS05035 () | 1090679..1090933 | - | 255 | WP_100850409.1 | helix-turn-helix domain-containing protein | - |
| DYD82_RS05040 () | 1091039..1091281 | + | 243 | WP_100849031.1 | helix-turn-helix domain-containing protein | - |
| DYD82_RS05045 () | 1091628..1091852 | + | 225 | WP_038903497.1 | DUF1778 domain-containing protein | - |
| DYD82_RS05050 () | 1091970..1093094 | + | 1125 | WP_100849032.1 | Foldase protein PrsA ; Integrase | Integrase |
| DYD82_RS05055 () | 1093347..1095329 | + | 1983 | WP_100849033.1 | site-specific DNA-methyltransferase | - |
| DYD82_RS05060 () | 1095329..1098313 | + | 2985 | WP_100849034.1 | DEAD/DEAH box helicase family protein | - |
| DYD82_RS05065 () | 1098430..1098999 | - | 570 | WP_100849035.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| DYD82_RS05070 () | 1099132..1101876 | + | 2745 | WP_192451885.1 | N-6 DNA methylase | - |
| DYD82_RS05075 () | 1101869..1103878 | + | 2010 | WP_188726081.1 | ATP-dependent helicase | - |
| DYD82_RS05080 () | 1103880..1105139 | + | 1260 | WP_100849038.1 | GIY-YIG nuclease family protein | - |
| DYD82_RS05085 () | 1105266..1105571 | - | 306 | WP_015854715.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| DYD82_RS05090 () | 1105574..1105792 | - | 219 | WP_100849039.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| DYD82_RS05095 () | 1105851..1106594 | - | 744 | WP_100849040.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| DYD82_RS05100 () | 1107496..1107846 | - | 351 | WP_100849042.1 | hypothetical protein | - |
| DYD82_RS05105 () | 1107969..1108157 | + | 189 | WP_033111580.1 | hypothetical protein | - |
| DYD82_RS05110 () | 1108310..1109572 | - | 1263 | WP_100849043.1 | Methylated-DNA--protein-cysteine methyltransferase ; Integrase | Integrase |
| DYD82_RS05120 () | 1110475..1112628 | + | 2154 | WP_049854445.1 | ornithine decarboxylase | - |
| DYD82_RS05125 () | 1112702..1114159 | - | 1458 | WP_038918049.1 | L-asparagine permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|