MGE detailed information
MGE type: IScluster/Tn MGE length: 33102 bp
Accession: NZ_CP031228 Location: 5222..38323 Organism: Pseudomonas amygdali pv. lachrymans str. M301315 Replicon: plasmid pPla107-2
Accession: NZ_CP031228 Location: 5222..38323 Organism: Pseudomonas amygdali pv. lachrymans str. M301315 Replicon: plasmid pPla107-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PLA107_RS40020 () | 359..775 | - | 417 | WP_005747127.1 | hypothetical protein | - |
| PLA107_RS40025 () | 837..1124 | - | 288 | WP_005622028.1 | helix-turn-helix domain-containing protein | - |
| PLA107_RS40030 () | 1124..1462 | - | 339 | WP_005747126.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PLA107_RS40035 () | 1669..4500 | + | 2832 | WP_005747125.1 | AAA family ATPase | - |
| PLA107_RS40040 () | 4647..5165 | - | 519 | WP_005747123.1 | GNAT family N-acetyltransferase | - |
| PLA107_RS40045 () | 5222..6790 | - | 1569 | WP_046835393.1 | IS66 family transposase ISPpu19 | Transposase |
| PLA107_RS40050 () | 6852..7187 | - | 336 | WP_005747121.1 | IS66 family transposase ISPsy43 | Transposase |
| PLA107_RS40055 () | 7184..7516 | - | 333 | WP_005747120.1 | IS66 family insertion sequence hypothetical protein | - |
| PLA107_RS40060 () | 8082..8702 | + | 621 | WP_005747119.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PLA107_RS40065 () | 9028..9249 | - | 222 | WP_004666918.1 | hypothetical protein | - |
| PLA107_RS40070 () | 9287..9700 | - | 414 | WP_005747117.1 | TraR/DksA family transcriptional regulator | - |
| PLA107_RS40075 () | 9723..9953 | - | 231 | WP_004668066.1 | carbon storage regulator | - |
| PLA107_RS40080 () | 10086..10589 | + | 504 | WP_020339809.1 | hypothetical protein | - |
| PLA107_RS40085 () | 10655..11668 | + | 1014 | WP_005741118.1 | IS30 family transposase IS1394 | Transposase |
| PLA107_RS40090 () | 11808..12119 | - | 312 | WP_155008591.1 | hypothetical protein | - |
| PLA107_RS40095 () | 12674..13483 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| PLA107_RS40100 () | 13480..14502 | - | 1023 | WP_005741072.1 | IS21 family transposase ISPsy4 | Transposase |
| PLA107_RS40105 () | 14571..14762 | - | 192 | WP_005746109.1 | hypothetical protein | - |
| PLA107_RS40110 () | 14854..15066 | - | 213 | WP_005746110.1 | hypothetical protein | - |
| PLA107_RS40115 () | 15124..15384 | - | 261 | WP_005746111.1 | hypothetical protein | - |
| PLA107_RS40120 () | 15441..15614 | - | 174 | WP_005746112.1 | hypothetical protein | - |
| PLA107_RS40125 () | 15626..15841 | - | 216 | WP_005746113.1 | hypothetical protein | - |
| PLA107_RS40130 () | 15935..16273 | - | 339 | WP_044299709.1 | hypothetical protein | - |
| PLA107_RS40135 () | 16287..16520 | - | 234 | WP_005746115.1 | hypothetical protein | - |
| PLA107_RS40140 () | 16559..16984 | + | 426 | Protein_24 | IS5 family transposase ISPsy2 | Transposase |
| PLA107_RS40145 () | 17221..18198 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| PLA107_RS40150 () | 18553..19173 | - | 621 | WP_004642393.1 | hypothetical protein | - |
| PLA107_RS40155 () | 19170..19436 | - | 267 | WP_004642394.1 | hypothetical protein | - |
| PLA107_RS40160 () | 19610..19858 | + | 249 | Protein_28 | hypothetical protein | - |
| PLA107_RS40165 () | 19944..20921 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| PLA107_RS40170 () | 21064..21738 | + | 675 | Protein_30 | IS3 family transposase ISPsy37 | Transposase |
| PLA107_RS40775 () | 21786..21902 | - | 117 | Protein_31 | prevent-host-death protein | - |
| PLA107_RS40180 () | 22112..22600 | + | 489 | WP_005746120.1 | hypothetical protein | - |
| PLA107_RS40185 () | 22769..23119 | - | 351 | WP_005746121.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PLA107_RS40190 () | 23132..23380 | - | 249 | WP_005746122.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PLA107_RS40195 () | 23630..24136 | + | 507 | Protein_35 | hypothetical protein | - |
| PLA107_RS40200 () | 24225..25202 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| PLA107_RS40205 () | 25791..27227 | - | 1437 | WP_005746124.1 | replication initiation protein | - |
| PLA107_RS40210 () | 27811..28065 | - | 255 | WP_005746128.1 | hypothetical protein | - |
| PLA107_RS40575 () | 29330..29740 | + | 411 | WP_020313555.1 | hypothetical protein | - |
| PLA107_RS40220 () | 30057..30653 | + | 597 | WP_003381935.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| PLA107_RS40225 () | 30643..33669 | + | 3027 | WP_005746130.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| PLA107_RS40230 () | 33702..33971 | + | 270 | Protein_42 | tyrosine-type recombinase/integrase | - |
| PLA107_RS40235 () | 34026..34739 | - | 714 | WP_002556089.1 | UPF0149 family protein | - |
| PLA107_RS40240 () | 34789..37743 | - | 2955 | Protein_44 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| PLA107_RS40245 () | 37748..38323 | - | 576 | WP_031599078.1 | Tn3 family transposase ISPsy39 | Transposase |
| PLA107_RS40250 () | 38520..38927 | + | 408 | Protein_46 | tyrosine-type recombinase/integrase | - |
| PLA107_RS40255 () | 39018..39653 | + | 636 | WP_005747128.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|