MGE detailed information
MGE type: Conjugative plasmid MGE length: 62136 bp
Accession: NZ_CP031227 Location: 1..62136 Organism: Pseudomonas amygdali pv. lachrymans str. M301315 Replicon: plasmid pPla107-1
Accession: NZ_CP031227 Location: 1..62136 Organism: Pseudomonas amygdali pv. lachrymans str. M301315 Replicon: plasmid pPla107-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PLA107_RS39695 () | 153..1295 | + | 1143 | WP_005746165.1 | IQ calmodulin-binding motif-containing protein | - |
| PLA107_RS39700 () | 1714..1995 | - | 282 | WP_002556029.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PLA107_RS39705 () | 1995..2183 | - | 189 | WP_002556028.1 | hypothetical protein | Antitoxin Detail |
| PLA107_RS39710 () | 2372..3007 | - | 636 | WP_054068142.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PLA107_RS39715 () | 3322..3954 | + | 633 | WP_003381804.1 | ParA family protein | - |
| PLA107_RS39720 () | 3990..4244 | + | 255 | WP_003381801.1 | hypothetical protein | - |
| PLA107_RS39725 () | 4669..5334 | - | 666 | WP_004667059.1 | LexA family transcriptional regulator | - |
| PLA107_RS39730 () | 5422..5652 | + | 231 | WP_032704469.1 | helix-turn-helix domain-containing protein | - |
| PLA107_RS39735 () | 6002..6691 | + | 690 | WP_005746161.1 | Type IV secretion system protein virB1 | VF |
| PLA107_RS39740 () | 6691..7026 | + | 336 | WP_005746160.1 | hypothetical protein | - |
| PLA107_RS39745 () | 7039..7440 | + | 402 | Protein_10 | VirB3 family type IV secretion system protein | - |
| PLA107_RS39750 () | 7376..9928 | + | 2553 | WP_005746158.1 | conjugal transfer protein | - |
| PLA107_RS39755 () | 9925..10611 | + | 687 | WP_004667979.1 | P-type DNA transfer protein VirB5 | - |
| PLA107_RS39760 () | 10644..11009 | + | 366 | WP_004643103.1 | hypothetical protein | - |
| PLA107_RS39765 () | 11020..11952 | + | 933 | WP_004667984.1 | type IV secretion system protein | - |
| PLA107_RS39770 () | 12026..12292 | + | 267 | WP_005746157.1 | hypothetical protein | - |
| PLA107_RS39775 () | 12329..13117 | + | 789 | WP_004667986.1 | Type IV secretion system protein virB8 | VF |
| PLA107_RS39780 () | 13107..13916 | + | 810 | WP_004667987.1 | P-type conjugative transfer protein VirB9 | - |
| PLA107_RS39785 () | 13903..15279 | + | 1377 | WP_005746156.1 | Type IV secretion system protein virB10 | VF |
| PLA107_RS39790 () | 15289..16344 | + | 1056 | WP_005746155.1 | Type IV secretion system protein VirB11 | VF |
| PLA107_RS39795 () | 16358..16744 | + | 387 | WP_005746154.1 | hypothetical protein | - |
| PLA107_RS39800 () | 16729..17094 | + | 366 | WP_004667995.1 | hypothetical protein | - |
| PLA107_RS39805 () | 17141..17407 | + | 267 | WP_004644125.1 | hypothetical protein | - |
| PLA107_RS39810 () | 17532..19943 | + | 2412 | WP_044299713.1 | ATP-binding protein | - |
| PLA107_RS39815 () | 20059..20292 | + | 234 | WP_004666680.1 | hypothetical protein | - |
| PLA107_RS39820 () | 20292..21965 | + | 1674 | WP_005746152.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PLA107_RS39825 () | 22005..22367 | + | 363 | WP_005746150.1 | Killer protein | - |
| PLA107_RS39830 () | 22395..24560 | + | 2166 | WP_005746149.1 | type IA DNA topoisomerase | - |
| PLA107_RS39835 () | 24587..24871 | + | 285 | WP_005746148.1 | hypothetical protein | - |
| PLA107_RS39840 () | 24899..25504 | + | 606 | WP_054068143.1 | single-stranded DNA-binding protein | - |
| PLA107_RS39845 () | 25815..26534 | + | 720 | WP_005746145.1 | hypothetical protein | - |
| PLA107_RS39850 () | 26531..27103 | + | 573 | WP_005746144.1 | hypothetical protein | - |
| PLA107_RS39855 () | 27170..27613 | - | 444 | WP_005746143.1 | hypothetical protein | - |
| PLA107_RS39860 () | 28007..28732 | + | 726 | WP_005746141.1 | relaxosome component | - |
| PLA107_RS39865 () | 28722..32495 | + | 3774 | WP_080544546.1 | hypothetical protein | Relaxase |
| PLA107_RS39870 () | 32615..32872 | + | 258 | WP_004666672.1 | Major pilu subunit operon regulatory protein PapB | VF |
| PLA107_RS40770 () | 32950..33087 | + | 138 | WP_005746136.1 | hypothetical protein | - |
| PLA107_RS39875 () | 33227..33676 | + | 450 | WP_005746135.1 | GntR family transcriptional regulator | - |
| PLA107_RS39880 () | 33735..33962 | + | 228 | WP_005746134.1 | hypothetical protein | - |
| PLA107_RS39885 () | 34360..35672 | + | 1313 | Protein_39 | replication initiation protein | - |
| PLA107_RS39890 () | 35897..36184 | + | 288 | WP_004667956.1 | HU family DNA-binding protein | - |
| PLA107_RS39895 () | 36329..37027 | + | 699 | WP_005741149.1 | GNAT family N-acetyltransferase | - |
| PLA107_RS39900 () | 37454..37636 | + | 183 | Protein_42 | DUF4113 domain-containing protein | - |
| PLA107_RS39905 () | 38763..41789 | - | 3027 | WP_005746130.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| PLA107_RS39910 () | 41779..42375 | - | 597 | WP_003381935.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| PLA107_RS40570 () | 42692..43102 | - | 411 | WP_020313555.1 | hypothetical protein | - |
| PLA107_RS39920 () | 44168..45694 | - | 1527 | WP_054068140.1 | IS66 family transposase ISPpu19 | Transposase |
| PLA107_RS39925 () | 45756..45893 | - | 138 | WP_020357967.1 | transposase | - |
| PLA107_RS39930 () | 45962..46771 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| PLA107_RS39935 () | 46768..47790 | - | 1023 | WP_005741072.1 | IS21 family transposase ISPsy4 | Transposase |
| PLA107_RS39940 () | 47859..48059 | - | 201 | WP_114805207.1 | IS66 family transposase ISPpu14 | Transposase |
| PLA107_RS39945 () | 48056..48388 | - | 333 | WP_005741230.1 | IS66 family insertion sequence hypothetical protein | - |
| PLA107_RS39950 () | 48696..49448 | + | 753 | WP_054068184.1 | hypothetical protein | - |
| PLA107_RS39955 () | 49583..50560 | - | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| PLA107_RS39960 () | 50709..51812 | + | 1104 | WP_004663854.1 | IS5 family transposase ISPsy19 | Transposase |
| PLA107_RS39965 () | 51978..52955 | - | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| PLA107_RS39970 () | 53043..53792 | - | 750 | Protein_56 | restriction endonuclease | - |
| PLA107_RS39975 () | 53976..55205 | + | 1230 | WP_005746179.1 | IS91 family transposase IS801 | Transposase |
| PLA107_RS39980 () | 55563..56498 | + | 936 | WP_005746178.1 | syringolide biosynthetic protein AvrD1 | - |
| PLA107_RS39985 () | 56840..57487 | + | 648 | WP_005746177.1 | histidine phosphatase family protein | - |
| PLA107_RS39990 () | 57633..58553 | + | 921 | WP_005746176.1 | TauD/TfdA family dioxygenase | - |
| PLA107_RS39995 () | 58571..59605 | + | 1035 | WP_005746175.1 | sulfotransferase family protein | - |
| PLA107_RS40000 () | 59646..60848 | + | 1203 | WP_005746174.1 | aspartate aminotransferase family protein | - |
| PLA107_RS40005 () | 60885..61541 | + | 657 | WP_044299722.1 | hypothetical protein | - |
| PLA107_RS40010 () | 61541..62119 | + | 579 | WP_005746172.1 | AAA family ATPase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|