MGE detailed information
MGE type: Conjugative plasmid MGE length: 95328 bp
Accession: NZ_CP031111 Location: 1..95328 Organism: Escherichia coli strain AMSCJX02 Replicon: plasmid pAMSC6
Accession: NZ_CP031111 Location: 1..95328 Organism: Escherichia coli strain AMSCJX02 Replicon: plasmid pAMSC6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DUT84_RS27665 () | 136..1434 | - | 1299 | WP_114455245.1 | conjugal transfer protein TraO | - |
| DUT84_RS27670 () | 1437..2420 | - | 984 | WP_021513963.1 | hypothetical protein | VF |
| DUT84_RS27675 () | 2431..3123 | - | 693 | Protein_3 | DotI/IcmL family type IV secretion protein | - |
| DUT84_RS27685 () | 3479..7254 | - | 3776 | Protein_4 | DNA primase | - |
| DUT84_RS27690 () | 7344..7895 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| DUT84_RS27695 () | 7910..8200 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| DUT84_RS27700 () | 8197..9345 | - | 1149 | WP_001024976.1 | putative protein YggR | VF |
| DUT84_RS27705 () | 9342..10160 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| DUT84_RS27710 () | 10157..10615 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| DUT84_RS27715 () | 11010..11594 | - | 585 | WP_000977520.1 | histidine phosphatase family protein | - |
| DUT84_RS27720 () | 11654..12856 | - | 1203 | WP_000976357.1 | conjugal transfer protein TraF | - |
| DUT84_RS27725 () | 12942..13766 | - | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| DUT84_RS27730 () | 13917..15071 | - | 1155 | WP_001139955.1 | integrase | - |
| DUT84_RS27760 () | 16591..16839 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| DUT84_RS27765 () | 16836..18128 | - | 1293 | WP_039719938.1 | hypothetical protein | VF |
| DUT84_RS27770 () | 18128..18784 | - | 657 | WP_001193551.1 | hypothetical protein | VF |
| DUT84_RS27775 () | 18769..19329 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| DUT84_RS27780 () | 19339..19953 | - | 615 | WP_000908228.1 | hypothetical protein | VF |
| DUT84_RS27785 () | 19970..21055 | - | 1086 | WP_001208803.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| DUT84_RS27790 () | 21068..22621 | - | 1554 | WP_000362204.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| DUT84_RS27795 () | 22632..23084 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| DUT84_RS27800 () | 23071..24366 | - | 1296 | WP_058649964.1 | type 4b pilus protein PilO2 | - |
| DUT84_RS27805 () | 24359..26041 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| DUT84_RS27810 () | 26055..26492 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| DUT84_RS27815 () | 26492..27559 | - | 1068 | WP_021513968.1 | hypothetical protein | VF |
| DUT84_RS27825 () | 28311..28565 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| DUT84_RS27830 () | 28737..29420 | - | 684 | WP_000213863.1 | hypothetical protein | - |
| DUT84_RS27840 () | 29674..30207 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| DUT84_RS27850 () | 30649..30936 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| DUT84_RS27855 () | 30854..31117 | - | 264 | WP_001324596.1 | ash family protein | - |
| DUT84_RS27870 () | 32090..33121 | + | 1032 | WP_000907852.1 | replication initiation protein | - |
| DUT84_RS27890 () | 34025..34309 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| DUT84_RS27895 () | 34309..34584 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DUT84_RS27900 () | 34690..34971 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| DUT84_RS28890 () | 35163..35429 | - | 267 | WP_000627832.1 | hypothetical protein | - |
| DUT84_RS27910 () | 35429..35923 | - | 495 | WP_015058884.1 | hypothetical protein | - |
| DUT84_RS27915 () | 35979..36581 | - | 603 | WP_000521606.1 | hypothetical protein | - |
| DUT84_RS27920 () | 36757..37809 | - | 1053 | WP_000655519.1 | hypothetical protein | - |
| DUT84_RS27925 () | 38022..38612 | - | 591 | WP_001401589.1 | hypothetical protein | - |
| DUT84_RS27930 () | 38612..38866 | - | 255 | WP_000343106.1 | hypothetical protein | - |
| DUT84_RS27940 () | 39434..39847 | + | 414 | WP_114455246.1 | hypothetical protein | - |
| DUT84_RS27945 () | 39849..40628 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| DUT84_RS27950 () | 40808..41452 | + | 645 | WP_001144036.1 | ParA family protein | - |
| DUT84_RS27955 () | 41539..41847 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| DUT84_RS27960 () | 42261..43241 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| DUT84_RS27965 () | 43234..43650 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| DUT84_RS27970 () | 43652..44800 | - | 1149 | Protein_47 | translesion error-prone DNA polymerase V subunit UmuC | - |
| DUT84_RS27975 () | 44863..45861 | + | 999 | WP_032325769.1 | IS91 family transposase ISMno24 | Transposase |
| DUT84_RS27980 () | 45858..46766 | + | 909 | Protein_49 | site-specific integrase | - |
| DUT84_RS27985 () | 46845..48068 | + | 1224 | WP_089557530.1 | tyrosine-type recombinase/integrase | - |
| DUT84_RS27990 () | 48115..48633 | - | 519 | WP_000993248.1 | hypothetical protein | - |
| DUT84_RS27995 () | 48646..49500 | - | 855 | WP_032325772.1 | WYL domain-containing protein | - |
| DUT84_RS28000 () | 49636..50817 | + | 1182 | WP_032325773.1 | hypothetical protein | - |
| DUT84_RS28005 () | 50814..53042 | + | 2229 | WP_032325774.1 | Mov34/MPN/PAD-1 family protein | - |
| DUT84_RS28010 () | 53087..53215 | - | 129 | Protein_55 | protein ImpB | - |
| DUT84_RS28015 () | 53215..53652 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| DUT84_RS28020 () | 53649..53897 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| DUT84_RS28030 () | 54315..55217 | + | 903 | WP_001442863.1 | DUF1281 domain-containing protein | - |
| DUT84_RS28035 () | 55221..55526 | + | 306 | WP_015058890.1 | hypothetical protein | - |
| DUT84_RS28040 () | 55755..57455 | - | 1701 | WP_046201411.1 | group II intron reverse transcriptase/maturase | - |
| DUT84_RS28045 () | 58035..58688 | + | 654 | WP_114455247.1 | DNA methylase | - |
| DUT84_RS28050 () | 58689..58910 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| DUT84_RS28055 () | 58923..59357 | + | 435 | WP_000274472.1 | DUF1380 family protein | - |
| DUT84_RS28665 () | 59408..60178 | + | 771 | WP_001434682.1 | hypothetical protein | - |
| DUT84_RS28070 () | 60718..61020 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| DUT84_RS28075 () | 61067..61489 | + | 423 | WP_000271741.1 | DUF1380 family protein | - |
| DUT84_RS28080 () | 61486..61677 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| DUT84_RS28100 () | 62448..62975 | + | 528 | WP_001276125.1 | single-stranded DNA-binding protein | - |
| DUT84_RS28105 () | 63033..63266 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| DUT84_RS28110 () | 63325..65283 | + | 1959 | WP_058649951.1 | ParB/RepB/Spo0J family partition protein | - |
| DUT84_RS28115 () | 65338..65772 | + | 435 | WP_000845898.1 | conjugation system SOS inhibitor PsiB | - |
| DUT84_RS28120 () | 65769..66488 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| DUT84_RS28125 () | 66485..67081 | + | 597 | WP_000978005.1 | hypothetical protein | - |
| DUT84_RS28135 () | 67544..68044 | + | 501 | WP_000117627.1 | antirestriction protein ArdA | - |
| DUT84_RS28150 () | 68773..69207 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| DUT84_RS28155 () | 69300..69566 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| DUT84_RS28160 () | 69631..70572 | + | 942 | WP_001480161.1 | Recombination-promoting nuclease RpnA | VF |
| DUT84_RS28165 () | 70572..70805 | + | 234 | WP_077697145.1 | hypothetical protein | - |
| DUT84_RS28170 () | 70836..71087 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| DUT84_RS28895 () | 71121..71318 | - | 198 | WP_001161108.1 | hypothetical protein | - |
| DUT84_RS28185 () | 71667..72515 | + | 849 | WP_064198692.1 | DUF4942 domain-containing protein | - |
| DUT84_RS28190 () | 72601..72936 | - | 336 | WP_000157100.1 | hypothetical protein | - |
| DUT84_RS28195 () | 73170..73502 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| DUT84_RS28200 () | 73513..76212 | + | 2700 | WP_006855641.1 | Protein TraI | Relaxase |
| DUT84_RS28205 () | 76249..78540 | - | 2292 | WP_001289275.1 | hypothetical protein | - |
| DUT84_RS28210 () | 78533..79603 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| DUT84_RS28215 () | 79622..80830 | - | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| DUT84_RS28220 () | 81048..82034 | - | 987 | WP_001257838.1 | hypothetical protein | - |
| - () | 82195..82252 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 82195..82252 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 82195..82252 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 82195..82252 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| DUT84_RS28225 () | 82307..82459 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| DUT84_RS28230 () | 82531..82782 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| DUT84_RS28900 () | 83441..83617 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| DUT84_RS28235 () | 83949..84158 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| DUT84_RS28240 () | 84230..84892 | - | 663 | WP_000644792.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| DUT84_RS28245 () | 84957..87125 | - | 2169 | WP_077250315.1 | DotA/TraY family protein | - |
| DUT84_RS28250 () | 87222..87806 | - | 585 | WP_001037996.1 | IncI1-type conjugal transfer protein TraX | - |
| DUT84_RS28255 () | 87835..89037 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| DUT84_RS28260 () | 89004..89618 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| DUT84_RS28265 () | 89618..92662 | - | 3045 | WP_001024776.1 | IncI1-type conjugal transfer protein TraU | - |
| DUT84_RS28270 () | 92752..93552 | - | 801 | WP_001164792.1 | IncI1-type conjugal transfer protein TraT | - |
| DUT84_RS28275 () | 93536..93724 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| DUT84_RS28280 () | 93788..94192 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| DUT84_RS28285 () | 94243..94770 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|