MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 85842 bp
Accession: NZ_CP030914 Location: 1..85842 Organism: Pseudomonas aeruginosa strain Y89 Replicon: plasmid pY89
Accession: NZ_CP030914 Location: 1..85842 Organism: Pseudomonas aeruginosa strain Y89 Replicon: plasmid pY89
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y89_RS32870 () | 337..1275 | + | 939 | WP_115747672.1 | TIGR03756 family integrating conjugative element protein | - |
| Y89_RS32875 () | 1293..2675 | + | 1383 | WP_003111734.1 | integrating conjugative element protein | - |
| Y89_RS32880 () | 2675..3022 | + | 348 | WP_003111733.1 | hypothetical protein | - |
| Y89_RS32885 () | 3019..4554 | + | 1536 | WP_115747673.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| Y89_RS32890 () | 4584..4937 | - | 354 | WP_115747674.1 | hypothetical protein | - |
| Y89_RS32895 () | 5056..5328 | + | 273 | WP_058130539.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| Y89_RS32900 () | 5332..5691 | + | 360 | WP_115747675.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| Y89_RS32905 () | 5701..6618 | - | 918 | WP_023082681.1 | hypothetical protein | - |
| Y89_RS32910 () | 6644..6883 | - | 240 | WP_023082682.1 | hypothetical protein | - |
| Y89_RS32915 () | 7267..8517 | + | 1251 | WP_003119430.1 | IS256 family transposase ISRso7 | Transposase |
| Y89_RS32920 () | 8677..10599 | + | 1923 | WP_022580137.1 | hypothetical protein | Relaxase |
| Y89_RS32925 () | 10596..11897 | + | 1302 | WP_003454526.1 | site-specific integrase | - |
| Y89_RS32930 () | 12370..13236 | + | 867 | WP_003111785.1 | ParA family protein | - |
| Y89_RS32935 () | 13238..13975 | + | 738 | WP_004347984.1 | hypothetical protein | - |
| Y89_RS32940 () | 13972..14469 | + | 498 | WP_003111783.1 | hypothetical protein | - |
| Y89_RS32945 () | 14522..15193 | + | 672 | WP_071535208.1 | Lar family restriction alleviation protein | - |
| Y89_RS32950 () | 15193..15894 | + | 702 | WP_021205064.1 | DUF2786 domain-containing protein | - |
| Y89_RS32955 () | 15891..16598 | + | 708 | WP_003122069.1 | HNH endonuclease | - |
| Y89_RS32960 () | 16582..16800 | + | 219 | WP_003122068.1 | hypothetical protein | - |
| Y89_RS32965 () | 16797..18143 | + | 1347 | WP_023911889.1 | replicative DNA helicase | - |
| Y89_RS32970 () | 18140..18325 | + | 186 | WP_023911888.1 | hypothetical protein | - |
| Y89_RS32975 () | 18315..18842 | + | 528 | WP_023911886.1 | hypothetical protein | - |
| Y89_RS32980 () | 18839..19096 | + | 258 | WP_004347980.1 | hypothetical protein | - |
| Y89_RS33610 () | 19089..19583 | + | 495 | WP_004347979.1 | hypothetical protein | - |
| Y89_RS32985 () | 19576..19809 | + | 234 | WP_004347978.1 | hypothetical protein | - |
| Y89_RS32990 () | 19809..20831 | + | 1023 | WP_023911882.1 | nucleoid-associated protein YejK | - |
| Y89_RS32995 () | 20828..21718 | + | 891 | WP_003117034.1 | DNA adenine methylase | - |
| Y89_RS33000 () | 21739..22008 | + | 270 | WP_003117035.1 | Arc family DNA-binding protein | - |
| Y89_RS33005 () | 22005..23741 | + | 1737 | WP_023657786.1 | ParB family protein | - |
| Y89_RS33010 () | 23769..24536 | + | 768 | WP_003134101.1 | DUF2857 domain-containing protein | - |
| Y89_RS33015 () | 24533..25858 | + | 1326 | WP_023132182.1 | hypothetical protein | - |
| Y89_RS33025 () | 26398..26595 | + | 198 | WP_023129302.1 | hypothetical protein | - |
| Y89_RS33030 () | 26752..27480 | + | 729 | WP_031275718.1 | TIGR03761 family integrating conjugative element protein | - |
| Y89_RS33035 () | 27486..28034 | + | 549 | WP_023911877.1 | DUF3158 family protein | - |
| Y89_RS33040 () | 28082..28912 | + | 831 | WP_023911875.1 | Rha family transcriptional regulator | - |
| Y89_RS33045 () | 28942..29430 | + | 489 | WP_023911873.1 | single-stranded DNA-binding protein | - |
| Y89_RS33050 () | 29687..29854 | + | 168 | WP_128729268.1 | CrpP family protein | - |
| Y89_RS33055 () | 29970..31889 | + | 1920 | WP_031275716.1 | type I DNA topoisomerase | - |
| Y89_RS33060 () | 32132..34009 | + | 1878 | WP_023911870.1 | hypothetical protein | - |
| Y89_RS33065 () | 34006..35982 | + | 1977 | WP_031275715.1 | DEAD/DEAH box helicase | - |
| Y89_RS33070 () | 36123..36467 | + | 345 | WP_003448665.1 | hypothetical protein | - |
| Y89_RS33075 () | 36538..36828 | - | 291 | WP_003448662.1 | putative addiction module antidote protein | Antitoxin Detail |
| Y89_RS33080 () | 36825..37124 | - | 300 | WP_003120987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| Y89_RS33085 () | 37325..38449 | + | 1125 | WP_023435880.1 | hypothetical protein | VF |
| Y89_RS33090 () | 38449..40158 | + | 1710 | WP_023435879.1 | Outer membrane lipoprotein BfpB | VF |
| Y89_RS33095 () | 40162..41487 | + | 1326 | WP_023435878.1 | type 4b pilus protein PilO2 | - |
| Y89_RS33100 () | 41477..42010 | + | 534 | WP_023435877.1 | type IV pilus biogenesis protein PilP | - |
| Y89_RS33105 () | 42019..43599 | + | 1581 | WP_174557987.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| Y89_RS33110 () | 43599..44678 | + | 1080 | WP_003109360.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| Y89_RS33115 () | 44700..45230 | + | 531 | WP_003099765.1 | hypothetical protein | VF |
| Y89_RS33120 () | 45227..46183 | + | 957 | WP_115747677.1 | Flp pilus assembly complex ATPase component TadA | - |
| Y89_RS33125 () | 46176..47555 | + | 1380 | WP_022579630.1 | hypothetical protein | VF |
| Y89_RS33130 () | 47573..48010 | + | 438 | WP_023093677.1 | hypothetical protein | VF |
| Y89_RS33140 () | 49011..49985 | + | 975 | WP_003149531.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| Y89_RS33150 () | 50295..50861 | + | 567 | WP_003149536.1 | hypothetical protein | - |
| Y89_RS33840 () | 50936..51112 | + | 177 | WP_003149538.1 | hypothetical protein | - |
| Y89_RS33155 () | 51574..52062 | + | 489 | WP_023093679.1 | DUF3577 domain-containing protein | - |
| Y89_RS33845 () | 52199..52357 | + | 159 | WP_003134147.1 | hypothetical protein | - |
| Y89_RS33160 () | 52432..52629 | + | 198 | WP_003149542.1 | hypothetical protein | - |
| Y89_RS33165 () | 52749..53456 | + | 708 | WP_023093680.1 | hypothetical protein | - |
| Y89_RS33170 () | 53692..54042 | + | 351 | WP_003099791.1 | hypothetical protein | - |
| Y89_RS33175 () | 54099..54731 | + | 633 | WP_003099792.1 | DUF3275 family protein | - |
| Y89_RS33180 () | 54728..55003 | + | 276 | WP_003099794.1 | hypothetical protein | - |
| Y89_RS33185 () | 55073..55435 | + | 363 | WP_003099795.1 | hypothetical protein | - |
| Y89_RS33190 () | 55503..55763 | + | 261 | WP_003099797.1 | hypothetical protein | - |
| Y89_RS33195 () | 55856..56461 | + | 606 | WP_003099799.1 | hypothetical protein | - |
| Y89_RS33200 () | 56491..57936 | + | 1446 | WP_003099801.1 | class I SAM-dependent methyltransferase | - |
| Y89_RS33205 () | 58041..60290 | + | 2250 | WP_029771374.1 | DEAD/DEAH box helicase | - |
| Y89_RS33615 () | 60449..60760 | + | 312 | WP_124014672.1 | FxLYD domain-containing protein | - |
| Y89_RS33210 () | 60875..61408 | - | 534 | WP_124014673.1 | hypothetical protein | - |
| Y89_RS33215 () | 61481..62740 | - | 1260 | WP_023093866.1 | S1 family peptidase | - |
| Y89_RS33220 () | 63182..63820 | + | 639 | WP_063879068.1 | hypothetical protein | - |
| Y89_RS33225 () | 63831..64586 | + | 756 | WP_025297849.1 | TIGR03759 family integrating conjugative element protein | - |
| Y89_RS33230 () | 64571..65152 | + | 582 | WP_003121011.1 | hypothetical protein | VF |
| Y89_RS33235 () | 65149..65649 | + | 501 | WP_003121012.1 | integrating conjugative element protein | - |
| Y89_RS33240 () | 65658..65927 | + | 270 | WP_023082675.1 | hypothetical protein | - |
| Y89_RS33245 () | 65931..68162 | + | 2232 | WP_023082676.1 | type IV conjugative transfer system coupling protein TraD | - |
| Y89_RS33250 () | 68162..68908 | + | 747 | WP_009316301.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| Y89_RS33255 () | 68926..69417 | + | 492 | WP_115747659.1 | hypothetical protein | - |
| Y89_RS33260 () | 69658..71139 | + | 1482 | WP_012076865.1 | UvrD-helicase domain-containing protein | - |
| Y89_RS33620 () | 71270..72379 | + | 1110 | WP_012076866.1 | hypothetical protein | - |
| Y89_RS33270 () | 72424..72735 | - | 312 | WP_003117074.1 | DUF2845 domain-containing protein | - |
| Y89_RS33275 () | 72908..73207 | + | 300 | WP_003117075.1 | hypothetical protein | - |
| Y89_RS33280 () | 73301..73639 | + | 339 | WP_012076868.1 | RAQPRD family integrative conjugative element protein | - |
| Y89_RS33285 () | 73636..73875 | + | 240 | WP_012076869.1 | TIGR03758 family integrating conjugative element protein | - |
| Y89_RS33290 () | 73893..74249 | + | 357 | WP_012076870.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| Y89_RS33295 () | 74260..74646 | + | 387 | WP_003117078.1 | TIGR03750 family conjugal transfer protein | - |
| Y89_RS33300 () | 74643..75302 | + | 660 | WP_003117079.1 | TIGR03746 family integrating conjugative element protein | - |
| Y89_RS33305 () | 75299..76183 | + | 885 | WP_003121020.1 | TIGR03749 family integrating conjugative element protein | - |
| Y89_RS33310 () | 76167..77672 | + | 1506 | WP_003121021.1 | TIGR03752 family integrating conjugative element protein | - |
| Y89_RS33315 () | 77650..78093 | + | 444 | WP_003121022.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| Y89_RS33320 () | 78093..81035 | + | 2943 | WP_115747678.1 | conjugative transfer ATPase | - |
| Y89_RS33325 () | 81032..81316 | + | 285 | WP_003086159.1 | hypothetical protein | - |
| Y89_RS33330 () | 81313..81984 | + | 672 | WP_023092929.1 | DsbA family protein | - |
| Y89_RS33335 () | 82167..83393 | + | 1227 | WP_071536083.1 | DNA cytosine methyltransferase | - |
| Y89_RS33340 () | 83380..85482 | - | 2103 | WP_023092930.1 | ATP-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|