MGE detailed information
MGE type: IScluster/Tn MGE length: 27304 bp
Accession: NZ_CP030773 Location: 72277..99580 Organism: Shigella flexneri 1c strain Y394 Replicon: plasmid pINV-Y394
Accession: NZ_CP030773 Location: 72277..99580 Organism: Shigella flexneri 1c strain Y394 Replicon: plasmid pINV-Y394
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7485_RS23870 (B7485_25905) | 67424..67612 | - | 189 | WP_000957853.1 | hypothetical protein | - |
| B7485_RS23880 (B7485_25915) | 68014..72108 | + | 4095 | WP_001034121.1 | serine protease autotransporter toxin SepA | - |
| B7485_RS23885 (B7485_25920) | 72277..72891 | - | 615 | Protein_90 | IS21-like element ISEc10 family helper ATPase IstB | - |
| B7485_RS23890 (B7485_25925) | 72923..73333 | - | 411 | Protein_91 | transposase | - |
| B7485_RS23895 (B7485_25930) | 73377..74586 | - | 1210 | Protein_92 | IS3 family transposase | - |
| B7485_RS23900 (B7485_25935) | 74636..75255 | - | 620 | Protein_93 | IS1 family transposase | - |
| B7485_RS23905 (B7485_25940) | 75659..77113 | + | 1455 | WP_075332747.1 | type 3 secretion system effector OspC2 | - |
| B7485_RS23915 (B7485_25950) | 77262..77390 | - | 129 | Protein_95 | IS5/IS1182 family transposase | - |
| B7485_RS23925 (B7485_25960) | 78750..79022 | - | 273 | WP_000019158.1 | hypothetical protein | - |
| B7485_RS23935 (B7485_25970) | 79294..79596 | + | 303 | WP_010921625.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| B7485_RS23940 (B7485_25975) | 79587..80069 | + | 483 | WP_000405245.1 | GNAT family N-acetyltransferase | Toxin Detail |
| B7485_RS23945 (B7485_25980) | 80137..80660 | + | 524 | Protein_100 | IS3-like element ISSfl11 family transposase | - |
| B7485_RS23950 (B7485_25985) | 80703..81911 | - | 1209 | Protein_101 | IS3 family transposase | - |
| B7485_RS23955 (B7485_25990) | 81963..83654 | - | 1692 | WP_149528155.1 | IpaH family type III secretion system E3 ubiquitin--protein ligase | - |
| B7485_RS23965 (B7485_26000) | 85216..86372 | - | 1157 | Protein_104 | IS3-like element IS600 family transposase | - |
| B7485_RS23970 (B7485_26005) | 86439..86720 | + | 282 | Protein_105 | IS4/IS5 family transposase | - |
| B7485_RS23975 (B7485_26010) | 86893..87378 | - | 486 | WP_128882125.1 | GNAT family N-acetyltransferase | Toxin Detail |
| B7485_RS23980 (B7485_26015) | 87366..87650 | - | 285 | WP_011114751.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| B7485_RS25315 | 88552..88716 | + | 165 | WP_001346193.1 | hypothetical protein | - |
| B7485_RS24005 (B7485_26040) | 88970..90572 | - | 1603 | Protein_109 | IS66-like element ISSfl3 family transposase | - |
| B7485_RS24010 (B7485_26045) | 90569..90919 | - | 351 | WP_005048975.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| B7485_RS24015 (B7485_26050) | 90916..91590 | - | 675 | WP_001088287.1 | IS66-like element accessory protein TnpA | - |
| B7485_RS24020 (B7485_26055) | 92162..93616 | + | 1455 | WP_094169927.1 | type 3 secretion system effector OspC4 | - |
| B7485_RS24030 (B7485_26065) | 93954..95018 | + | 1065 | Protein_113 | IS3 family transposase | - |
| B7485_RS24035 (B7485_26070) | 95059..95862 | + | 804 | Protein_114 | IS3 family transposase | - |
| B7485_RS25865 | 95977..96318 | + | 342 | Protein_115 | IS21 family transposase | - |
| B7485_RS24040 (B7485_26075) | 96301..97138 | + | 838 | Protein_116 | IS4 family transposase | - |
| B7485_RS24045 (B7485_26080) | 97188..98384 | - | 1197 | WP_134798317.1 | IS110-like element ISSfl4 family transposase | - |
| B7485_RS24050 (B7485_26085) | 98576..99580 | - | 1005 | WP_128882030.1 | IS21 family transposase | - |
| B7485_RS25870 | 99927..100736 | + | 810 | Protein_119 | IS110 family transposase | - |
| B7485_RS24055 (B7485_26090) | 100933..101712 | + | 780 | WP_005059304.1 | type III secretion system effector cysteine protease IpaJ | - |
| B7485_RS24060 (B7485_26095) | 102659..103588 | - | 930 | WP_000227976.1 | virulence regulon transcriptional activator VirB | - |
| B7485_RS24065 (B7485_26100) | 103805..104041 | - | 237 | WP_000588813.1 | phosphopantetheine-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|