MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 109207 bp
Accession: NZ_CP030352 Location: 871715..980921 Organism: Novosphingobium sp. P6W Replicon: chromosome
Accession: NZ_CP030352 Location: 871715..980921 Organism: Novosphingobium sp. P6W Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TQ38_RS04385 () | 867000..867719 | - | 720 | WP_043972006.1 | GcrA cell cycle regulator | - |
| TQ38_RS04390 () | 867829..868734 | + | 906 | WP_043972004.1 | ABC transporter permease | - |
| TQ38_RS04395 () | 868861..871059 | + | 2199 | WP_052505589.1 | EAL domain-containing protein | - |
| TQ38_RS04400 () | 871103..871483 | - | 381 | WP_043972001.1 | heat shock protein HspQ | - |
| TQ38_RS04410 () | 871924..873255 | + | 1332 | WP_043971999.1 | hypothetical protein ; Integrase | Integrase |
| TQ38_RS04415 () | 873431..875668 | - | 2238 | WP_082057558.1 | hypothetical protein | VF |
| TQ38_RS04420 () | 876176..877108 | - | 933 | WP_043973303.1 | formylglycine-generating enzyme family protein | - |
| TQ38_RS04425 () | 877168..879078 | - | 1911 | WP_043973301.1 | sulfatase-like hydrolase/transferase | - |
| TQ38_RS04430 () | 879090..880796 | - | 1707 | WP_043973300.1 | sulfatase | - |
| TQ38_RS04435 () | 880808..882280 | - | 1473 | WP_205316070.1 | hypothetical protein | VF |
| TQ38_RS04440 () | 882277..883689 | - | 1413 | WP_052505587.1 | sulfatase-like hydrolase/transferase | - |
| TQ38_RS04445 () | 883689..885467 | - | 1779 | WP_082057556.1 | arylsulfatase | - |
| TQ38_RS04450 () | 885687..886406 | + | 720 | WP_052505586.1 | TetR/AcrR family transcriptional regulator | - |
| TQ38_RS04455 () | 886535..888961 | + | 2427 | WP_162792204.1 | Vitamin B12 transporter BtuB | VF |
| TQ38_RS04460 () | 889099..891318 | + | 2220 | WP_043971995.1 | glycoside hydrolase family 3 C-terminal domain-containing protein | - |
| TQ38_RS04465 () | 891399..892700 | + | 1302 | WP_043971991.1 | Protein TsgA | VF |
| TQ38_RS04470 () | 892780..894105 | + | 1326 | WP_205316095.1 | hypothetical protein | VF |
| TQ38_RS04475 () | 894325..895932 | - | 1608 | WP_052505585.1 | hypothetical protein | - |
| TQ38_RS04480 () | 896865..897098 | - | 234 | WP_043971985.1 | DUF2274 domain-containing protein | - |
| TQ38_RS04485 () | 897113..898294 | - | 1182 | WP_043971982.1 | TrbI/VirB10 family protein | - |
| TQ38_RS04490 () | 898291..899115 | - | 825 | WP_043971978.1 | P-type conjugative transfer protein TrbG | - |
| TQ38_RS04495 () | 899112..899936 | - | 825 | WP_043971976.1 | conjugal transfer protein TrbF | - |
| TQ38_RS04500 () | 899940..901244 | - | 1305 | WP_043971972.1 | P-type conjugative transfer protein TrbL | - |
| TQ38_RS04505 () | 901379..902125 | - | 747 | WP_043971970.1 | P-type conjugative transfer protein TrbJ | - |
| TQ38_RS04510 () | 902125..904584 | - | 2460 | WP_043971968.1 | conjugal transfer protein TrbE | - |
| TQ38_RS04515 () | 904578..904862 | - | 285 | WP_043971967.1 | VirB3 family type IV secretion system protein | - |
| TQ38_RS04520 () | 904859..905197 | - | 339 | WP_043971965.1 | TrbC/VirB2 family protein | - |
| TQ38_RS04525 () | 905194..906225 | - | 1032 | WP_043971962.1 | hypothetical protein | VF |
| TQ38_RS04530 () | 906222..906626 | - | 405 | WP_043971960.1 | hypothetical protein | - |
| TQ38_RS04535 () | 906629..908671 | - | 2043 | WP_043971957.1 | hypothetical protein | VF |
| TQ38_RS04540 () | 909081..909326 | + | 246 | WP_043971954.1 | hypothetical protein | - |
| TQ38_RS04545 () | 909585..909785 | + | 201 | WP_043973273.1 | hypothetical protein | - |
| TQ38_RS04550 () | 909785..910249 | + | 465 | WP_052505584.1 | hypothetical protein | - |
| TQ38_RS04555 () | 910716..912227 | + | 1512 | WP_162792205.1 | TolC family protein | - |
| TQ38_RS04560 () | 912220..914394 | + | 2175 | WP_043971949.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| TQ38_RS04565 () | 914391..915785 | + | 1395 | WP_043971947.1 | hypothetical protein | VF |
| TQ38_RS29885 () | 915782..916969 | + | 1188 | WP_162792206.1 | SEL1-like repeat protein | - |
| TQ38_RS30480 () | 916983..920135 | + | 3153 | Protein_897 | hypothetical protein | - |
| TQ38_RS30485 () | 920148..920981 | + | 834 | Protein_898 | hypothetical protein | VF |
| TQ38_RS30490 () | 921489..921737 | + | 249 | Protein_899 | hypothetical protein | VF |
| TQ38_RS30495 () | 921762..921920 | + | 159 | Protein_900 | hypothetical protein | VF |
| TQ38_RS30500 () | 922464..922721 | + | 258 | Protein_901 | hypothetical protein | VF |
| TQ38_RS30505 () | 922851..923687 | + | 837 | Protein_902 | hypothetical protein | VF |
| TQ38_RS30510 () | 923697..924194 | + | 498 | Protein_903 | hypothetical protein | VF |
| TQ38_RS30515 () | 924540..926282 | + | 1743 | Protein_904 | hypothetical protein | VF |
| TQ38_RS30520 () | 926358..926654 | + | 297 | Protein_905 | hypothetical protein | VF |
| TQ38_RS30525 () | 928473..932225 | + | 3753 | WP_205316096.1 | hypothetical protein | VF |
| TQ38_RS04575 () | 932251..932763 | + | 513 | WP_043971938.1 | toxin-activating lysine-acyltransferase | - |
| TQ38_RS04580 () | 932922..933629 | + | 708 | WP_043971936.1 | hypothetical protein | - |
| TQ38_RS04585 () | 933634..934266 | + | 633 | WP_043971934.1 | hypothetical protein | - |
| TQ38_RS04590 () | 934526..935452 | + | 927 | WP_043971933.1 | HEPN domain-containing protein | - |
| TQ38_RS04595 () | 935680..936273 | + | 594 | WP_043971931.1 | hypothetical protein | VF |
| TQ38_RS04600 () | 936270..937364 | + | 1095 | WP_043971929.1 | FecR domain-containing protein | - |
| TQ38_RS04605 () | 937426..939978 | + | 2553 | WP_043971926.1 | Vitamin B12 transporter BtuB | VF |
| TQ38_RS04610 () | 939982..942120 | + | 2139 | WP_113941882.1 | Atxe2 family lasso peptide isopeptidase | - |
| TQ38_RS04615 () | 942133..943878 | - | 1746 | WP_043971924.1 | asparagine synthetase B family protein | - |
| TQ38_RS04620 () | 943875..944528 | - | 654 | WP_043971921.1 | lasso peptide biosynthesis B2 protein | - |
| TQ38_RS04625 () | 944626..944760 | - | 135 | WP_113941883.1 | benenodin family lasso peptide | - |
| TQ38_RS04630 () | 944907..945554 | - | 648 | WP_043971919.1 | GntR family transcriptional regulator | - |
| TQ38_RS04635 () | 945759..946190 | - | 432 | WP_043973268.1 | MarR family transcriptional regulator | - |
| TQ38_RS04640 () | 946408..946869 | - | 462 | WP_043971918.1 | hypothetical protein | - |
| TQ38_RS04645 () | 946904..947242 | - | 339 | WP_043971915.1 | hypothetical protein | - |
| TQ38_RS04650 () | 947250..947723 | - | 474 | WP_052505583.1 | helix-turn-helix transcriptional regulator | - |
| TQ38_RS04655 () | 948778..949392 | + | 615 | WP_082057590.1 | DUF2285 domain-containing protein | - |
| TQ38_RS04660 () | 950074..951039 | + | 966 | WP_043971906.1 | DUF1738 domain-containing protein | - |
| TQ38_RS04665 () | 951036..951464 | + | 429 | WP_043971904.1 | DUF2958 domain-containing protein | - |
| TQ38_RS04670 () | 951624..953168 | + | 1545 | Protein_926 | chromosome partitioning protein ParB | - |
| TQ38_RS04675 () | 953378..953806 | + | 429 | WP_043971901.1 | hypothetical protein | - |
| TQ38_RS04680 () | 954159..954458 | + | 300 | WP_043971899.1 | DUF736 domain-containing protein | - |
| TQ38_RS04685 () | 954626..954856 | + | 231 | WP_043971896.1 | helix-turn-helix domain-containing protein | - |
| TQ38_RS04690 () | 954853..955434 | + | 582 | WP_043971895.1 | S26 family signal peptidase | - |
| TQ38_RS04695 () | 955422..956045 | + | 624 | WP_043971893.1 | lytic transglycosylase domain-containing protein | - |
| TQ38_RS04700 () | 956285..956650 | + | 366 | WP_205316097.1 | hypothetical protein | - |
| TQ38_RS04705 () | 956848..958866 | + | 2019 | WP_205316098.1 | DUF3363 domain-containing protein | - |
| TQ38_RS04710 () | 959053..960276 | + | 1224 | WP_043971891.1 | DNA (cytosine-5-)-methyltransferase | - |
| TQ38_RS04715 () | 960280..960732 | + | 453 | WP_043971889.1 | DNA mismatch endonuclease Vsr | - |
| TQ38_RS04720 () | 960733..962055 | + | 1323 | WP_043971886.1 | hypothetical protein | - |
| TQ38_RS04725 () | 962215..963384 | + | 1170 | WP_043971883.1 | DNA cytosine methyltransferase | - |
| TQ38_RS29890 () | 963448..964233 | + | 786 | WP_162792207.1 | hypothetical protein | - |
| TQ38_RS04730 () | 964244..965011 | + | 768 | WP_162792208.1 | hypothetical protein | - |
| TQ38_RS04735 () | 965012..967594 | + | 2583 | WP_082057551.1 | hypothetical protein | - |
| TQ38_RS04740 () | 968416..969387 | - | 972 | WP_043979934.1 | adenosine deaminase | - |
| TQ38_RS04745 () | 969457..970014 | + | 558 | WP_043979935.1 | hypothetical protein | - |
| TQ38_RS04750 () | 970007..970822 | + | 816 | WP_043979937.1 | SIR2 family protein | - |
| TQ38_RS04755 () | 971033..971839 | - | 807 | WP_162792209.1 | abortive infection family protein | - |
| TQ38_RS04760 () | 972270..972827 | + | 558 | WP_052506001.1 | hypothetical protein | - |
| TQ38_RS04765 () | 973045..973950 | + | 906 | WP_043979939.1 | Tyrosine recombinase XerC | VF |
| TQ38_RS04770 () | 973955..975148 | + | 1194 | WP_043979941.1 | IS91 family transposase ISMno24 | Transposase |
| TQ38_RS30530 () | 975641..975715 | - | 75 | WP_205316099.1 | hypothetical protein | - |
| TQ38_RS04785 () | 975982..976590 | + | 609 | WP_082057957.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| TQ38_RS04790 () | 976587..977501 | + | 915 | WP_043979946.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| TQ38_RS04795 () | 978433..978654 | + | 222 | WP_043979948.1 | AlpA family phage regulatory protein | - |
| TQ38_RS04800 () | 978942..979550 | + | 609 | WP_043979950.1 | hypothetical protein | - |
| TQ38_RS04805 () | 979543..980595 | + | 1053 | WP_043979953.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| TQ38_RS04810 () | 981104..982276 | + | 1173 | WP_043979955.1 | site-specific integrase | - |
| TQ38_RS04815 () | 982341..982544 | - | 204 | WP_082057958.1 | helix-turn-helix domain-containing protein | - |
| TQ38_RS04820 () | 983015..983494 | + | 480 | WP_043979959.1 | MucR family transcriptional regulator | - |
| TQ38_RS04825 () | 983826..984917 | - | 1092 | WP_205316071.1 | substrate-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|