MGE detailed information

MGE type: Conjugative plasmid        MGE length: 185511 bp
Accession: NZ_CP030071        Location: 1..185511         Organism: Klebsiella pneumoniae strain DA12090       Replicon: plasmid pDA12090.1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DL426_RS00010 () 1236..1805 - 570 WP_004152117.1 Spore protein SP21 VF
DL426_RS00015 () 1840..2121 - 282 WP_004152118.1 helix-turn-helix domain-containing protein -
DL426_RS00020 () 2365..2628 - 264 WP_004118208.1 hypothetical protein -
DL426_RS00025 () 2643..2906 + 264 WP_004118209.1 transposase -
DL426_RS00030 () 2851..2967 + 117 Protein_5 transposase domain-containing protein -
DL426_RS00035 () 3152..3849 + 698 Protein_6 IS1 family transposase IS1X3 Transposase
DL426_RS00040 () 4057..5064 - 1008 WP_004181997.1 formamidase -
DL426_RS00045 () 5100..5789 - 690 WP_004181996.1 urea ABC transporter ATP-binding subunit UrtE -
DL426_RS00050 () 5800..6549 - 750 WP_004181995.1 urea ABC transporter ATP-binding protein UrtD -
DL426_RS00055 () 6546..7661 - 1116 WP_004181994.1 urea ABC transporter permease subunit UrtC -
DL426_RS00060 () 7671..8597 - 927 WP_004181993.1 urea ABC transporter permease subunit UrtB -
DL426_RS00065 () 8654..9844 - 1191 WP_004197507.1 urea ABC transporter substrate-binding protein -
DL426_RS00070 () 10149..13529 + 3381 WP_004181991.1 Aerobic respiration control sensor protein ArcB VF
DL426_RS00075 () 13492..14412 + 921 WP_004181990.1 putative cyclic di-GMP phosphodiesterase VF
DL426_RS00080 () 14464..14928 + 465 Protein_15 IS91 family transposase IS1294 Transposase
DL426_RS00085 () 14972..15352 - 381 Protein_16 transposase family protein -
DL426_RS00090 () 15409..16377 - 969 WP_072143344.1 IS5 family transposase IS903B Transposase
DL426_RS00095 () 16546..17047 - 502 Protein_18 DUF2913 family protein -
DL426_RS00110 () 17667..18112 - 446 Protein_19 creatininase family protein -
DL426_RS00115 () 18288..20021 - 1734 WP_004118832.1 Glutathione import ATP-binding protein GsiA VF
DL426_RS00120 () 20029..20976 - 948 WP_004118225.1 acetamidase/formamidase family protein -
DL426_RS00125 () 21021..22625 - 1605 WP_004152278.1 ABC transporter substrate-binding protein -
DL426_RS00130 () 22638..23558 - 921 WP_004118227.1 ABC transporter permease -
DL426_RS00135 () 23558..24406 - 849 WP_004118228.1 ABC transporter permease -
DL426_RS00140 () 24403..24996 - 594 WP_004118229.1 ANTAR domain-containing protein -
DL426_RS00145 () 24993..26120 - 1128 WP_004118840.1 transporter substrate-binding protein -
DL426_RS00150 () 26405..26572 - 168 WP_004118231.1 integrase -
DL426_RS00155 () 26714..27199 + 486 Protein_28 IS21 family transposase ISEc62 Transposase
DL426_RS00160 () 27675..28196 + 522 WP_004197062.1 putative RNA polymerase sigma factor FecI VF
DL426_RS00165 () 28193..29146 + 954 WP_004197067.1 fec operon regulator FecR -
DL426_RS00170 () 29239..31563 + 2325 WP_145851993.1 Fe(3+) dicitrate transport protein FecA -
DL426_RS00175 () 31608..32510 + 903 WP_023157913.1 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB -
DL426_RS00180 () 32507..33505 + 999 WP_004118243.1 Fe(3+) dicitrate transport system permease protein FecC VF
DL426_RS00185 () 33502..34458 + 957 WP_004118246.1 Fe(3+) dicitrate transport system permease protein FecD VF
DL426_RS00190 () 34459..35226 + 768 WP_004152282.1 Fe(3+) dicitrate transport ATP-binding protein FecE VF
DL426_RS00195 () 35325..35618 + 294 WP_004118251.1 IS66 family transposase ISKpn24 Transposase
DL426_RS00200 () 35693..35920 + 228 Protein_37 IS66 family transposase -
DL426_RS00205 () 35949..36236 - 288 WP_165765869.1 EAL domain-containing protein -
DL426_RS00210 () 36570..37579 - 1010 Protein_39 Zinc-type alcohol dehydrogenase-like protein VF
DL426_RS00220 () 38040..39122 + 1083 WP_016831235.1 DNA-binding transcriptional repressor LacI -
DL426_RS00225 () 39244..42318 + 3075 WP_004182121.1 beta-galactosidase -
DL426_RS00230 () 42370..43623 + 1254 WP_004182120.1 lactose permease -
DL426_RS00235 () 43689..43829 + 141 Protein_43 galactoside O-acetyltransferase -
DL426_RS00240 () 43844..44540 - 697 Protein_44 IS1 family transposase -
DL426_RS00245 () 44729..44989 - 261 WP_023313931.1 DUF2534 family protein -
DL426_RS00250 () 45046..47109 - 2064 WP_004182117.1 TonB-dependent copper receptor -
DL426_RS00255 () 47192..47611 - 420 WP_015065566.1 DUF2946 domain-containing protein -
DL426_RS00265 () 48554..48838 + 285 WP_000537151.1 IS3 family transposase ISEc15 Transposase
DL426_RS00270 () 48835..49689 + 855 WP_077254108.1 IS3 family transposase ISEc15 Transposase
DL426_RS00275 () 50075..50395 + 321 WP_004197483.1 hypothetical protein -
DL426_RS00285 () 51703..52716 - 1014 WP_145851997.1 replication initiation protein -
DL426_RS00295 () 52875..52946 - 72 WP_071786674.1 RepA leader peptide Tap -
DL426_RS00300 () 53158..53427 - 270 WP_016831067.1 replication regulatory protein RepA -
DL426_RS00305 () 53563..54042 - 480 WP_069346050.1 Phospholipase D VF
DL426_RS00310 () 54218..54526 - 309 WP_016831065.1 hypothetical protein -
DL426_RS00315 () 54523..55173 - 651 WP_016831064.1 DUF2726 domain-containing protein -
DL426_RS00320 () 55229..55450 - 222 WP_016831063.1 hypothetical protein -
DL426_RS00325 () 56046..56267 - 222 WP_016831062.1 hypothetical protein -
DL426_RS00330 () 56329..56883 - 555 WP_055330116.1 fertility inhibition protein FinO -
DL426_RS00335 () 56955..57680 - 726 WP_016831060.1 type-F conjugative transfer system pilin acetylase TraX -
DL426_RS00340 () 57761..63019 - 5259 WP_016831059.1 Multifunctional conjugation protein TraI Relaxase
DL426_RS00345 () 63019..65301 - 2283 Protein_62 type IV conjugative transfer system coupling protein TraD -
DL426_RS27090 () 65428..66117 - 690 WP_072159541.1 hypothetical protein -
DL426_RS00355 () 66310..67041 - 732 WP_016831056.1 complement resistance protein TraT -
DL426_RS00360 () 67292..67894 - 603 WP_071604857.1 hypothetical protein -
DL426_RS00365 () 67917..70739 - 2823 WP_020325096.1 conjugal transfer mating pair stabilization protein TraG -
DL426_RS00370 () 70739..72118 - 1380 WP_072159542.1 conjugal transfer protein TraH -
DL426_RS00375 () 72096..72539 - 444 WP_145852001.1 F-type conjugal transfer protein TrbF -
DL426_RS00380 () 72585..73142 - 558 WP_004152678.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
DL426_RS00385 () 73114..73353 - 240 WP_004144400.1 type-F conjugative transfer system pilin chaperone TraQ -
DL426_RS00390 () 73364..74116 - 753 WP_004152677.1 type-F conjugative transfer system pilin assembly protein TraF -
DL426_RS00395 () 74137..74463 - 327 WP_016831051.1 hypothetical protein -
DL426_RS00400 () 74476..74724 - 249 WP_004152675.1 hypothetical protein -
DL426_RS00405 () 74702..74956 - 255 WP_015065558.1 conjugal transfer protein TrbE -
DL426_RS00410 () 74988..76943 - 1956 WP_024623124.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
DL426_RS00415 () 77002..77649 - 648 WP_016831049.1 type-F conjugative transfer system pilin assembly protein TrbC -
DL426_RS27095 () 77728..77904 - 177 WP_162866177.1 hypothetical protein -
DL426_RS00420 () 77925..78914 - 990 WP_015632509.1 conjugal transfer pilus assembly protein TraU -
DL426_RS00425 () 78911..79312 - 402 WP_016831047.1 hypothetical protein -
DL426_RS00430 () 79347..79982 - 636 WP_145852004.1 type-F conjugative transfer system protein TraW -
DL426_RS00435 () 79982..80371 - 390 WP_004167468.1 type-F conjugative transfer system protein TrbI -
DL426_RS00440 () 80371..83010 - 2640 WP_016831045.1 type IV secretion system protein TraC -
DL426_RS00445 () 83082..83480 - 399 WP_023158008.1 hypothetical protein -
DL426_RS00450 () 83488..83878 - 391 Protein_84 hypothetical protein -
DL426_RS00455 () 83921..84325 - 405 WP_016831042.1 hypothetical protein -
DL426_RS00460 () 84396..84704 - 309 WP_108979138.1 hypothetical protein -
DL426_RS00465 () 84705..84923 - 219 WP_014386199.1 hypothetical protein -
DL426_RS00470 () 84947..85236 - 290 Protein_88 hypothetical protein -
DL426_RS00475 () 85241..85651 - 411 WP_016831039.1 hypothetical protein -
DL426_RS00480 () 85783..86367 - 585 WP_014386196.1 type IV conjugative transfer system lipoprotein TraV -
DL426_RS00485 () 86390..86986 - 597 Protein_91 conjugal transfer protein TraP -
DL426_RS00490 () 86979..88403 - 1425 WP_023158013.1 conjugal transfer protein TraB -
DL426_RS00495 () 88403..89143 - 741 WP_014386193.1 type-F conjugative transfer system secretin TraK -
DL426_RS00500 () 89130..89696 - 567 WP_016831035.1 type IV conjugative transfer system protein TraE -
DL426_RS00505 () 89716..90021 - 306 WP_004144424.1 type IV conjugative transfer system protein TraL -
DL426_RS00510 () 90035..90403 - 369 WP_004194426.1 type IV conjugative transfer system pilin TraA -
DL426_RS00515 () 90465..90671 - 207 WP_171773970.1 TraY domain-containing protein -
DL426_RS00520 () 90804..91523 - 720 WP_016831034.1 conjugal transfer protein TrbJ -
DL426_RS00525 () 91723..92139 - 417 WP_072145360.1 relaxosome protein TraM -
DL426_RS00530 () 92530..93015 + 486 WP_004178063.1 hypothetical protein VF
DL426_RS00535 () 93048..93377 - 330 WP_011977736.1 hypothetical protein -
DL426_RS00540 () 93410..94231 - 822 WP_004182076.1 DUF945 domain-containing protein -
DL426_RS00560 () 95064..95477 - 414 WP_004182074.1 helix-turn-helix domain-containing protein -
DL426_RS00565 () 95478..95756 - 279 WP_004152721.1 helix-turn-helix domain-containing protein -
DL426_RS00570 () 95746..96066 - 321 WP_145852006.1 type II toxin-antitoxin system RelE/ParE family toxin -
DL426_RS00575 () 96147..96371 - 225 WP_020325128.1 hypothetical protein -
DL426_RS00580 () 96382..96594 - 213 WP_004182070.1 hypothetical protein -
DL426_RS00585 () 96655..97011 - 357 WP_004152717.1 hypothetical protein -
DL426_RS00595 () 97647..97997 - 351 WP_004182068.1 hypothetical protein -
DL426_RS00600 () 97994..98266 - 273 WP_023317525.1 hypothetical protein -
DL426_RS00605 () 98961..99122 - 162 WP_004118124.1 type I toxin-antitoxin system Hok family toxin -
DL426_RS00615 () 99350..99724 - 375 WP_004182064.1 hypothetical protein -
DL426_RS00620 () 99780..100106 - 327 WP_108978839.1 theronine dehydrogenase -
DL426_RS00625 () 100103..100831 - 729 Protein_114 plasmid SOS inhibition protein A -
DL426_RS00630 () 100828..101259 - 432 WP_013023806.1 conjugation system SOS inhibitor PsiB -
DL426_RS00635 () 101304..103361 - 2058 WP_108978840.1 ParB/RepB/Spo0J family partition protein -
DL426_RS00640 () 103431..103679 - 249 WP_004182058.1 DUF905 domain-containing protein -
DL426_RS00645 () 103728..104270 - 543 WP_004182056.1 single-stranded DNA-binding protein -
DL426_RS00660 () 105105..105668 - 564 WP_004182054.1 methyltransferase -
DL426_RS00665 () 105716..107071 - 1356 WP_108979187.1 DUF3560 domain-containing protein -
DL426_RS00670 () 107123..107353 - 231 WP_001568051.1 hypothetical protein -
DL426_RS00675 () 107445..107672 - 228 WP_004182050.1 hypothetical protein -
DL426_RS00680 () 108399..108716 - 318 WP_004118473.1 hypothetical protein -
DL426_RS00685 () 108751..109005 - 255 WP_004152754.1 DNA polymerase III subunit theta -
DL426_RS00690 () 109242..109667 - 426 WP_004118478.1 antirestriction protein -
DL426_RS00700 () 110187..110417 - 231 WP_004118481.1 hypothetical protein -
DL426_RS00705 () 110651..112162 - 1512 WP_024623221.1 Group II intron-encoded protein LtrA VF
DL426_RS00715 () 112564..112989 + 426 WP_004182047.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
DL426_RS00720 () 112989..114260 + 1272 WP_132369617.1 Y-family DNA polymerase -
DL426_RS00725 () 114339..114590 + 252 WP_004182043.1 hypothetical protein -
DL426_RS00730 () 114835..116787 - 1953 WP_000037308.1 DUF262 domain-containing HNH endonuclease family protein -
DL426_RS00735 () 116784..118064 - 1281 WP_004182042.1 DUF262 domain-containing protein -
DL426_RS00745 () 119032..119728 + 697 Protein_133 IS1 family transposase -
DL426_RS00750 () 120503..121622 - 1120 Protein_134 IS3 family transposase ISSen4 Transposase
DL426_RS00760 () 122665..123636 - 972 WP_004182039.1 ParB/RepB/Spo0J family plasmid partition protein -
DL426_RS00765 () 123636..124802 - 1167 WP_004182032.1 Sporulation initiation inhibitor protein Soj VF
DL426_RS00770 () 125554..126564 + 1011 WP_004182030.1 RepB family plasmid replication initiator protein -
DL426_RS00775 () 127282..128022 - 741 WP_001515717.1 tyrosine-type recombinase/integrase -
DL426_RS00780 () 129166..130113 + 948 WP_023328266.1 sensor domain-containing diguanylate cyclase -
DL426_RS00785 () 130140..132023 - 1884 WP_077269298.1 putative signaling protein VF
DL426_RS00790 () 132553..132675 + 123 WP_139788384.1 small membrane protein -
DL426_RS00795 () 132966..133601 + 636 WP_064185732.1 hypothetical protein -
DL426_RS00800 () 133901..134374 + 474 WP_131863819.1 hypothetical protein -
DL426_RS00805 () 134901..135158 - 258 WP_023328269.1 hypothetical protein -
DL426_RS00810 () 135763..137217 + 1455 WP_071836382.1 putative cyclic di-GMP phosphodiesterase PdeB VF
DL426_RS00815 () 137751..138281 - 531 Protein_146 hypothetical protein -
DL426_RS00820 () 138333..138683 - 351 WP_023328272.1 hypothetical protein -
DL426_RS00830 () 138872..139070 - 199 Protein_148 hypothetical protein -
DL426_RS00835 () 139249..140223 - 975 WP_023328273.1 sensor domain-containing diguanylate cyclase -
DL426_RS00840 () 140860..141768 + 909 WP_001372261.1 HNH endonuclease -
DL426_RS00845 () 142156..142506 - 351 WP_023328274.1 DUF305 domain-containing protein -
DL426_RS00850 () 142650..143081 - 432 WP_000790483.1 silver-binding protein SilE -
DL426_RS00855 () 143332..144807 - 1476 WP_000555737.1 copper/silver sensor histidine kinase SilS -
DL426_RS00860 () 144800..145480 - 681 WP_000697969.1 Transcriptional regulatory protein CusR VF
DL426_RS00865 () 145670..147055 + 1386 WP_000475503.1 Cation efflux system protein CusC VF
DL426_RS00870 () 147084..147437 + 354 WP_001246153.1 cation efflux system protein CusF -
DL426_RS00875 () 147551..148843 + 1293 WP_004098959.1 Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB -
DL426_RS00880 () 148854..152000 + 3147 WP_004098958.1 Cu(+)/Ag(+) efflux RND transporter permease subunit SilA -
DL426_RS00885 () 152087..152527 + 441 WP_000758228.1 hypothetical protein -
DL426_RS00890 () 152654..155101 + 2448 WP_132369585.1 Ag(+)-translocating P-type ATPase SilP -
DL426_RS00895 () 155142..155339 + 198 WP_000843497.1 DUF2933 domain-containing protein -
DL426_RS00900 () 155373..156110 - 738 WP_004182013.1 Murein DD-endopeptidase MepM VF
DL426_RS00905 () 156399..156848 - 450 WP_001023257.1 copper resistance protein -
DL426_RS00910 () 157082..158899 + 1818 WP_000925242.1 multicopper oxidase PcoA -
DL426_RS00915 () 158905..159795 + 891 WP_001378118.1 copper resistance outer membrane transporter PcoB -
DL426_RS00920 () 159835..160215 + 381 WP_000025662.1 copper resistance system metallochaperone PcoC -
DL426_RS00925 () 160220..161149 + 930 WP_023328276.1 copper resistance inner membrane protein PcoD -
DL426_RS00930 () 161204..161884 + 681 WP_001188930.1 Transcriptional activator protein CopR VF
DL426_RS00935 () 161881..163281 + 1401 WP_004152084.1 copper resistance membrane spanning protein PcoS -
DL426_RS00940 () 163498..163932 + 435 WP_004152085.1 copper resistance system metallochaperone PcoE -
DL426_RS00945 () 164164..164343 - 180 WP_024623170.1 type II toxin-antitoxin system RelE/ParE family toxin -
DL426_RS00950 () 164404..166024 - 1621 Protein_172 ISL3 family transposase ISEc38 Transposase
DL426_RS00955 () 166086..166595 + 510 WP_004196769.1 aquaporin -
DL426_RS00960 () 166645..167142 - 498 WP_004196778.1 GNAT family N-acetyltransferase -
DL426_RS00965 () 167474..167800 + 327 WP_004152092.1 metalloregulator ArsR/SmtB family transcription factor -
DL426_RS00970 () 167797..168510 + 714 WP_004182006.1 arsenical resistance protein ArsH -
DL426_RS00975 () 168519..169064 + 546 WP_004182005.1 sigma-70 family RNA polymerase sigma factor -
DL426_RS00980 () 169140..169502 + 363 WP_004152095.1 arsenic metallochaperone ArsD family protein -
DL426_RS00985 () 169527..171277 + 1751 Protein_179 arsenical pump-driving ATPase -
DL426_RS00990 () 171399..171935 + 537 WP_004152096.1 GNAT family N-acetyltransferase -
DL426_RS00995 () 171968..172393 - 426 WP_004152097.1 glutaredoxin-dependent arsenate reductase -
DL426_RS01000 () 172406..173695 - 1290 WP_004152098.1 arsenite efflux transporter membrane subunit ArsB -
DL426_RS01005 () 173743..175494 - 1752 WP_004152099.1 Arsenical pump-driving ATPase VF
DL426_RS01010 () 175512..175874 - 363 WP_004152100.1 arsenite efflux transporter metallochaperone ArsD -
DL426_RS01015 () 175924..176274 - 351 WP_004152101.1 As(III)-sensing metalloregulatory transcriptional repressor ArsR -
DL426_RS01020 () 176632..176901 + 270 WP_004152102.1 hypothetical protein -
DL426_RS01025 () 176889..177464 + 576 WP_004152103.1 hypothetical protein -
DL426_RS01030 () 177495..177989 + 495 WP_004152104.1 DNA-binding protein -
DL426_RS01035 () 178033..178401 + 369 WP_004152105.1 hypothetical protein -
DL426_RS01040 () 178435..178638 + 204 WP_004152106.1 hemolysin expression modulator Hha -
DL426_RS01045 () 178687..178944 + 258 WP_004152107.1 hypothetical protein -
DL426_RS01050 () 179020..179274 + 255 WP_004152108.1 hypothetical protein -
DL426_RS01055 () 179450..179716 + 267 WP_003026799.1 DUF1778 domain-containing protein Antitoxin Detail
DL426_RS01060 () 179704..180186 + 483 WP_003026803.1 GNAT family N-acetyltransferase Toxin Detail
DL426_RS01065 () 180345..181599 - 1255 Protein_195 IS3 family transposase ISKpn38 Transposase
DL426_RS01070 () 181687..182649 - 963 WP_004152113.1 M48 family metalloprotease -
DL426_RS01075 () 182636..183124 - 489 WP_004152114.1 phosphate-starvation-inducible PsiE family protein -
DL426_RS01090 () 183622..183819 - 198 WP_004152115.1 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance