MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 165742 bp
Accession: NZ_CP030066 Location: 1..165742 Organism: Klebsiella pneumoniae strain IA565 Replicon: plasmid pDA11912.1
Accession: NZ_CP030066 Location: 1..165742 Organism: Klebsiella pneumoniae strain IA565 Replicon: plasmid pDA11912.1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DPF99_RS00005 () | 699..1709 | + | 1011 | WP_000200070.1 | RepB family plasmid replication initiator protein | - |
| DPF99_RS00010 () | 2406..3146 | - | 741 | WP_004187098.1 | IS91 family transposase ISMno23 | Transposase |
| DPF99_RS00015 () | 3777..4085 | - | 309 | Protein_2 | IS3 family transposase ISLad1 | Transposase |
| DPF99_RS00020 () | 4101..5183 | - | 1083 | WP_020803817.1 | IS110 family transposase ISEc21 | Transposase |
| DPF99_RS00030 () | 5463..5999 | - | 537 | Protein_4 | IS3 family transposase ISEhe3 | Transposase |
| DPF99_RS00035 () | 6022..6396 | + | 375 | Protein_5 | IS21 family transposase ISEc62 | Transposase |
| DPF99_RS00050 () | 6605..6745 | + | 141 | Protein_6 | IS3 family transposase ISEc14 | Transposase |
| DPF99_RS00055 () | 6819..6947 | - | 129 | Protein_7 | IS110 family transposase | - |
| DPF99_RS00060 () | 7364..7972 | + | 609 | WP_001493056.1 | hypothetical protein | VF |
| DPF99_RS00065 () | 8166..8867 | + | 702 | WP_000820820.1 | putative fimbrial chaperone YadV | VF |
| DPF99_RS00070 () | 8879..11365 | + | 2487 | WP_004207004.1 | Outer membrane usher protein HtrE | VF |
| DPF99_RS00075 () | 11356..12330 | + | 975 | WP_032426258.1 | Fimbria adhesin protein | VF |
| DPF99_RS00080 () | 12345..12995 | + | 651 | WP_001283944.1 | hypothetical protein | VF |
| DPF99_RS00085 () | 13057..13773 | - | 717 | WP_000994520.1 | Cyclic di-GMP phosphodiesterase PdeH | VF |
| DPF99_RS00090 () | 13915..14499 | - | 585 | WP_004207007.1 | Transcriptional regulatory protein UhpA | VF |
| DPF99_RS00095 () | 14617..15327 | - | 711 | WP_072044480.1 | Flagellar brake protein YcgR | VF |
| DPF99_RS00105 () | 15537..16505 | + | 969 | WP_117252065.1 | IS5 family transposase IS903B | Transposase |
| DPF99_RS00110 () | 16621..17874 | - | 1254 | WP_003846917.1 | lactose permease | - |
| DPF99_RS00115 () | 17926..21000 | - | 3075 | WP_117252064.1 | beta-galactosidase | - |
| DPF99_RS00120 () | 21122..22204 | - | 1083 | WP_007851507.1 | DNA-binding transcriptional repressor LacI | - |
| DPF99_RS00125 () | 22574..23566 | + | 993 | WP_032411208.1 | zinc-binding alcohol dehydrogenase family protein | - |
| DPF99_RS00130 () | 23970..24974 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| DPF99_RS00135 () | 25253..26980 | - | 1728 | Protein_22 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| DPF99_RS00140 () | 27139..27717 | + | 579 | WP_004206571.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| DPF99_RS00145 () | 27893..29098 | + | 1206 | WP_004206572.1 | chromate efflux transporter | - |
| DPF99_RS00150 () | 29109..29414 | + | 306 | WP_004206574.1 | PadR family transcriptional regulator | - |
| DPF99_RS00155 () | 29543..30241 | - | 699 | WP_016151343.1 | arsenical resistance protein ArsH | - |
| DPF99_RS00160 () | 30327..30647 | + | 321 | WP_004206577.1 | transcriptional regulator | - |
| DPF99_RS00165 () | 30692..31981 | + | 1290 | WP_032238422.1 | arsenic transporter | - |
| DPF99_RS00170 () | 31994..32419 | + | 426 | WP_023316432.1 | glutaredoxin-dependent arsenate reductase | - |
| DPF99_RS00175 () | 32594..33598 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| DPF99_RS00180 () | 33860..34138 | + | 279 | WP_004118253.1 | EAL domain-containing protein | - |
| DPF99_RS00185 () | 34166..34393 | - | 228 | Protein_32 | IS66 family transposase | - |
| DPF99_RS00190 () | 34468..34761 | - | 294 | WP_004118251.1 | IS66 family transposase ISKpn24 | Transposase |
| DPF99_RS00195 () | 34860..35627 | - | 768 | WP_004152282.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| DPF99_RS00200 () | 35628..36584 | - | 957 | WP_004118246.1 | Fe(3+) dicitrate transport system permease protein FecD | VF |
| DPF99_RS00205 () | 36581..37579 | - | 999 | WP_004118243.1 | Fe(3+) dicitrate transport system permease protein FecC | VF |
| DPF99_RS00210 () | 37576..38478 | - | 903 | WP_004118241.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| DPF99_RS00215 () | 38523..40847 | - | 2325 | WP_004118239.1 | Fe(3+) dicitrate transport protein FecA | - |
| DPF99_RS00220 () | 40934..41887 | - | 954 | WP_004118237.1 | fec operon regulator FecR | - |
| DPF99_RS00225 () | 41884..42405 | - | 522 | WP_004118235.1 | putative RNA polymerase sigma factor FecI | VF |
| DPF99_RS00230 () | 42881..43366 | - | 486 | Protein_41 | IS21 family transposase ISEc62 | Transposase |
| DPF99_RS27360 () | 43367..43579 | - | 213 | WP_161989521.1 | hypothetical protein | - |
| DPF99_RS00235 () | 43508..43675 | + | 168 | WP_004118231.1 | integrase | - |
| DPF99_RS00240 () | 43960..45087 | + | 1128 | WP_004118230.1 | transporter substrate-binding protein | - |
| DPF99_RS00245 () | 45084..45677 | + | 594 | WP_004118229.1 | ANTAR domain-containing protein | - |
| DPF99_RS00250 () | 45674..46522 | + | 849 | WP_004118228.1 | ABC transporter permease | - |
| DPF99_RS00255 () | 46522..47442 | + | 921 | WP_004118227.1 | ABC transporter permease | - |
| DPF99_RS00260 () | 47455..49059 | + | 1605 | WP_004152278.1 | ABC transporter substrate-binding protein | - |
| DPF99_RS00265 () | 49104..50051 | + | 948 | WP_004118225.1 | acetamidase/formamidase family protein | - |
| DPF99_RS00270 () | 50059..51792 | + | 1734 | WP_004118832.1 | Glutathione import ATP-binding protein GsiA | VF |
| DPF99_RS00275 () | 53614..53991 | - | 378 | Protein_51 | IS66 family transposase ISEc22 | Transposase |
| DPF99_RS00280 () | 54029..55566 | - | 1538 | Protein_52 | IS66 family transposase ISCfr14 | Transposase |
| DPF99_RS00285 () | 55616..55963 | - | 348 | WP_004114612.1 | IS66 family transposase ISCfr14 | Transposase |
| DPF99_RS00290 () | 55960..56337 | - | 378 | WP_004114613.1 | IS66 family transposase ISSgsp1 | Transposase |
| DPF99_RS00295 () | 56894..57529 | - | 636 | WP_004118217.1 | His-Xaa-Ser repeat protein HxsA | - |
| DPF99_RS00300 () | 57526..58638 | - | 1113 | WP_000005560.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
| DPF99_RS00305 () | 58631..60019 | - | 1389 | WP_004118216.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| DPF99_RS00310 () | 60019..60291 | - | 273 | WP_000333416.1 | His-Xaa-Ser system protein HxsD | - |
| DPF99_RS00315 () | 60768..62037 | + | 1270 | Protein_59 | IS3 family transposase ISEcl1 | Transposase |
| DPF99_RS00320 () | 62034..62543 | - | 510 | WP_004187073.1 | DUF2778 domain-containing protein | - |
| DPF99_RS00325 () | 62809..63882 | + | 1074 | WP_004118212.1 | FUSC family protein | - |
| DPF99_RS00330 () | 63990..64781 | - | 792 | Protein_62 | ATP-dependent helicase | - |
| DPF99_RS00335 () | 64839..65807 | - | 969 | WP_019704591.1 | IS5 family transposase IS903B | Transposase |
| DPF99_RS00345 () | 65840..66145 | - | 306 | Protein_64 | arsenate reductase (glutaredoxin) | - |
| DPF99_RS00350 () | 66158..67447 | - | 1290 | WP_004187067.1 | arsenic transporter | - |
| DPF99_RS00355 () | 67492..67812 | - | 321 | WP_026005941.1 | transcriptional regulator | - |
| DPF99_RS00360 () | 67898..68283 | + | 386 | Protein_67 | NAD(P)H-dependent oxidoreductase | - |
| DPF99_RS00365 () | 68552..69541 | - | 990 | WP_004187061.1 | IS91 family transposase ISAzo26 | Transposase |
| DPF99_RS00370 () | 69730..70206 | + | 477 | WP_019704592.1 | hypothetical protein | - |
| DPF99_RS00375 () | 70362..72248 | + | 1887 | WP_004187059.1 | AAA family ATPase | - |
| DPF99_RS00380 () | 72245..74056 | + | 1812 | WP_004187056.1 | hypothetical protein | - |
| DPF99_RS00385 () | 74478..76130 | + | 1653 | WP_032238637.1 | hypothetical protein | - |
| DPF99_RS00390 () | 76169..76963 | - | 795 | WP_004187050.1 | tetratricopeptide repeat protein | - |
| DPF99_RS00395 () | 77022..78368 | - | 1347 | WP_077250283.1 | ISNCY family transposase ISLad2 | Transposase |
| DPF99_RS00400 () | 78576..79058 | - | 483 | WP_004187044.1 | GNAT family N-acetyltransferase | Toxin Detail |
| DPF99_RS00405 () | 79046..79312 | - | 267 | WP_003026799.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| DPF99_RS00415 () | 79463..80167 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DPF99_RS00420 () | 80326..82911 | - | 2586 | WP_004187040.1 | putative signaling protein | VF |
| DPF99_RS00425 () | 82880..83125 | - | 246 | WP_032238678.1 | hypothetical protein | - |
| DPF99_RS00430 () | 83183..84163 | - | 981 | Protein_80 | IS5 family transposase ISKpn26 | Transposase |
| DPF99_RS00435 () | 84232..84399 | - | 168 | Protein_81 | transposase | - |
| DPF99_RS00440 () | 84540..85502 | - | 963 | WP_004187034.1 | M48 family metalloprotease | - |
| DPF99_RS00445 () | 85489..86238 | - | 750 | WP_004187033.1 | phosphate-starvation-inducible PsiE family protein | - |
| DPF99_RS00455 () | 86476..86673 | - | 198 | WP_004187030.1 | hypothetical protein | - |
| DPF99_RS00460 () | 86673..89468 | - | 2796 | WP_004152116.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VF |
| DPF99_RS00465 () | 89574..90143 | - | 570 | WP_004152117.1 | Spore protein SP21 | VF |
| DPF99_RS00470 () | 90178..90459 | - | 282 | WP_013307885.1 | helix-turn-helix domain-containing protein | - |
| DPF99_RS00475 () | 90703..90966 | - | 264 | WP_004118208.1 | hypothetical protein | - |
| DPF99_RS00480 () | 90981..91244 | + | 264 | WP_004187027.1 | transposase | - |
| DPF99_RS00485 () | 91189..91305 | + | 117 | Protein_90 | transposase domain-containing protein | - |
| DPF99_RS00490 () | 91493..91917 | + | 425 | Protein_91 | IS1 family transposase IS1G | Transposase |
| DPF99_RS00495 () | 92207..92455 | + | 249 | WP_004187025.1 | plasmid stabilization protein | Antitoxin Detail |
| DPF99_RS00500 () | 92445..92729 | + | 285 | WP_145778088.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DPF99_RS00505 () | 92745..94100 | - | 1356 | WP_004187017.1 | ISNCY family transposase ISCARN112 | Transposase |
| DPF99_RS27365 () | 94182..94481 | - | 300 | Protein_95 | conjugal transfer protein TraH | - |
| DPF99_RS27370 () | 94479..94962 | - | 484 | Protein_96 | hypothetical protein | - |
| DPF99_RS00515 () | 94979..95503 | - | 525 | Protein_97 | hypothetical protein | - |
| DPF99_RS00525 () | 97046..97510 | + | 465 | WP_004187010.1 | hypothetical protein | - |
| DPF99_RS00530 () | 97510..98130 | + | 621 | Protein_99 | hypothetical protein | - |
| DPF99_RS00535 () | 98076..98665 | + | 590 | Protein_100 | IS1 family transposase IS1X4 | Transposase |
| DPF99_RS00540 () | 98978..100723 | - | 1746 | WP_004187005.1 | ATP-grasp domain-containing protein | - |
| DPF99_RS00545 () | 100723..102306 | - | 1584 | WP_004181711.1 | urea amidolyase family protein | - |
| DPF99_RS00550 () | 102319..103125 | - | 807 | WP_004187003.1 | putative hydro-lyase | - |
| DPF99_RS00555 () | 103122..103895 | - | 774 | WP_004181708.1 | LamB/YcsF family protein | - |
| DPF99_RS00560 () | 103904..105148 | - | 1245 | WP_004181707.1 | divalent metal cation transporter | - |
| DPF99_RS00565 () | 105488..106138 | + | 651 | WP_004181705.1 | GntR family transcriptional regulator | - |
| DPF99_RS00570 () | 106171..106877 | - | 707 | Protein_107 | IS1 family transposase IS1X4 | Transposase |
| DPF99_RS00575 () | 106927..108381 | + | 1455 | WP_100206809.1 | ATP-grasp domain-containing protein | - |
| DPF99_RS00580 () | 108422..109258 | - | 837 | WP_004186999.1 | DUF1989 domain-containing protein | - |
| DPF99_RS00585 () | 109258..109980 | - | 723 | WP_004186998.1 | GntR family transcriptional regulator | - |
| DPF99_RS00590 () | 109990..111498 | - | 1509 | WP_004186997.1 | Arginine transport ATP-binding protein ArtM | VF |
| DPF99_RS00595 () | 111523..112338 | - | 816 | WP_004186996.1 | ABC transporter substrate-binding protein | - |
| DPF99_RS00605 () | 113767..114768 | - | 1002 | WP_032238598.1 | replication initiation protein | - |
| DPF99_RS00610 () | 114761..115312 | - | 552 | WP_032238600.1 | replication protein | - |
| DPF99_RS00615 () | 115305..115376 | - | 72 | WP_071786674.1 | RepA leader peptide Tap | - |
| DPF99_RS00620 () | 115608..115793 | - | 186 | WP_050548118.1 | hypothetical protein | - |
| DPF99_RS00625 () | 115787..116095 | - | 309 | Protein_117 | IS3 family transposase ISLad1 | Transposase |
| DPF99_RS00630 () | 116112..117188 | - | 1077 | WP_000227969.1 | IS110 family transposase ISEc21 | Transposase |
| DPF99_RS00640 () | 117470..118329 | - | 860 | Protein_119 | IS3 family transposase | - |
| DPF99_RS00645 () | 118399..119232 | + | 834 | Protein_120 | IS3 family transposase ISEhe3 | Transposase |
| DPF99_RS00650 () | 120014..121291 | - | 1278 | WP_023343081.1 | DUF2254 domain-containing protein | - |
| DPF99_RS00655 () | 121354..123351 | - | 1998 | WP_023307506.1 | choline BCCT transporter BetT | - |
| DPF99_RS00660 () | 123792..124169 | - | 378 | Protein_123 | LysR family transcriptional regulator | - |
| DPF99_RS00665 () | 124958..125311 | + | 354 | WP_001114073.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| DPF99_RS00670 () | 125359..125721 | + | 363 | WP_004118102.1 | arsenite efflux transporter metallochaperone ArsD | - |
| DPF99_RS00675 () | 125739..127490 | + | 1752 | WP_019704517.1 | arsenite efflux transporter ATPase subunit ArsA | - |
| DPF99_RS00680 () | 127538..128827 | + | 1290 | WP_004118136.1 | arsenite efflux transporter membrane subunit ArsB | - |
| DPF99_RS00685 () | 128840..129265 | + | 426 | WP_004118138.1 | glutaredoxin-dependent arsenate reductase | - |
| DPF99_RS00695 () | 129616..130230 | + | 615 | WP_032423391.1 | hypothetical protein | - |
| DPF99_RS00700 () | 130290..130418 | + | 129 | Protein_130 | transcriptional regulator | - |
| DPF99_RS00705 () | 130486..131025 | - | 540 | Protein_131 | DMT family transporter | - |
| DPF99_RS00715 () | 131083..132063 | + | 981 | Protein_132 | IS5 family transposase ISKpn26 | Transposase |
| DPF99_RS00725 () | 132225..133763 | - | 1539 | WP_022644883.1 | IS66 family transposase ISKpn24 | Transposase |
| DPF99_RS00730 () | 133812..134159 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| DPF99_RS00735 () | 134156..134560 | - | 405 | WP_007372134.1 | IS66 family transposase ISKpn24 | Transposase |
| DPF99_RS00740 () | 134822..135256 | - | 435 | WP_004118347.1 | hypothetical protein | - |
| DPF99_RS00745 () | 135472..136872 | - | 1401 | WP_002436614.1 | copper resistance membrane spanning protein PcoS | - |
| DPF99_RS00750 () | 136869..137549 | - | 681 | WP_001188930.1 | Transcriptional activator protein CopR | VF |
| DPF99_RS00755 () | 137604..138533 | - | 930 | WP_004118344.1 | copper resistance inner membrane protein PcoD | - |
| DPF99_RS00760 () | 138538..138918 | - | 381 | WP_000025662.1 | copper resistance system metallochaperone PcoC | - |
| DPF99_RS00765 () | 138958..139848 | - | 891 | WP_020803534.1 | copper resistance outer membrane transporter PcoB | - |
| DPF99_RS00770 () | 139854..141671 | - | 1818 | WP_000925242.1 | multicopper oxidase PcoA | - |
| DPF99_RS00775 () | 141905..142354 | + | 450 | WP_001023257.1 | copper resistance protein | - |
| DPF99_RS00780 () | 142643..143380 | + | 738 | WP_000287501.1 | Murein DD-endopeptidase MepM | VF |
| DPF99_RS00785 () | 143414..143611 | - | 198 | WP_000843497.1 | DUF2933 domain-containing protein | - |
| DPF99_RS00790 () | 143652..146099 | - | 2448 | WP_004187133.1 | Ag(+)-translocating P-type ATPase SilP | - |
| DPF99_RS00795 () | 146226..146666 | - | 441 | WP_000758228.1 | hypothetical protein | - |
| DPF99_RS00800 () | 146753..149899 | - | 3147 | WP_004098958.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| DPF99_RS00805 () | 149910..151202 | - | 1293 | WP_004098959.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| DPF99_RS00810 () | 151316..151669 | - | 354 | WP_001246153.1 | cation efflux system protein CusF | - |
| DPF99_RS00815 () | 151698..153083 | - | 1386 | WP_004187124.1 | Cation efflux system protein CusC | VF |
| DPF99_RS00820 () | 153273..153953 | + | 681 | WP_000697969.1 | Transcriptional regulatory protein CusR | VF |
| DPF99_RS00825 () | 153946..155421 | + | 1476 | WP_000555737.1 | copper/silver sensor histidine kinase SilS | - |
| DPF99_RS00830 () | 155672..156103 | + | 432 | WP_004187113.1 | silver-binding protein SilE | - |
| DPF99_RS00835 () | 156251..156601 | + | 351 | WP_004187110.1 | DUF305 domain-containing protein | - |
| DPF99_RS00840 () | 156787..157701 | - | 915 | WP_031592169.1 | HNH endonuclease | - |
| DPF99_RS00845 () | 158239..159087 | - | 849 | WP_023343086.1 | hypothetical protein | - |
| DPF99_RS00850 () | 159216..159920 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DPF99_RS00855 () | 159985..160182 | + | 198 | Protein_159 | peptidase | - |
| DPF99_RS00860 () | 160182..161453 | + | 1272 | WP_004187101.1 | Y-family DNA polymerase | - |
| DPF99_RS00865 () | 161532..161783 | + | 252 | WP_004187100.1 | hypothetical protein | - |
| DPF99_RS00870 () | 161837..162142 | + | 306 | WP_000534920.1 | hypothetical protein | - |
| DPF99_RS00885 () | 163563..164534 | - | 972 | WP_000817038.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| DPF99_RS00890 () | 164534..165700 | - | 1167 | WP_000523812.1 | Sporulation initiation inhibitor protein Soj | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|