MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 119613 bp
Accession: NZ_CP030003 Location: 1..119613 Organism: Salmonella enterica subsp. enterica serovar Brandenburg strain SA20064858 Replicon: plasmid pSA20064858.1
Accession: NZ_CP030003 Location: 1..119613 Organism: Salmonella enterica subsp. enterica serovar Brandenburg strain SA20064858 Replicon: plasmid pSA20064858.1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DOE58_RS23960 () | 46..1077 | + | 1032 | WP_022630251.1 | replication initiation protein | - |
| DOE58_RS23980 () | 1987..2979 | + | 993 | WP_001420353.1 | hypothetical protein | - |
| DOE58_RS23985 () | 3038..3655 | - | 618 | WP_000521604.1 | hypothetical protein | - |
| DOE58_RS23990 () | 3850..5406 | - | 1557 | WP_001599383.1 | AAA family ATPase | - |
| DOE58_RS23995 () | 5671..6261 | - | 591 | WP_001599382.1 | hypothetical protein | - |
| DOE58_RS24000 () | 6258..6518 | - | 261 | WP_058799198.1 | hypothetical protein | - |
| DOE58_RS24005 () | 6832..7092 | + | 261 | WP_032280099.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| DOE58_RS24010 () | 7127..7375 | + | 249 | WP_071787159.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DOE58_RS24015 () | 7600..8034 | - | 435 | WP_058799199.1 | copper resistance system metallochaperone PcoE | - |
| DOE58_RS24020 () | 8252..9652 | - | 1401 | WP_001211181.1 | copper resistance membrane spanning protein PcoS | - |
| DOE58_RS24025 () | 9649..10329 | - | 681 | WP_001188930.1 | copper response regulator transcription factor PcoR | - |
| DOE58_RS24030 () | 10384..11013 | - | 630 | Protein_11 | copper resistance inner membrane protein PcoD | - |
| DOE58_RS24035 () | 11123..12331 | + | 1209 | WP_114050483.1 | IS4-like element ISVsa5 family transposase | - |
| DOE58_RS24040 () | 12347..12757 | - | 411 | Protein_13 | helix-turn-helix domain-containing protein | - |
| DOE58_RS24045 () | 12845..13438 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| DOE58_RS24050 () | 13551..14756 | - | 1206 | WP_001089068.1 | tetracycline efflux MFS transporter Tet(B) | - |
| DOE58_RS24055 () | 14838..15461 | + | 624 | WP_000088605.1 | tetracycline resistance transcriptional repressor TetR(B) | - |
| DOE58_RS24060 () | 15439..16125 | - | 687 | WP_114050537.1 | winged helix-turn-helix domain-containing protein | - |
| DOE58_RS24065 () | 16133..16519 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| DOE58_RS24070 () | 16512..16832 | - | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| DOE58_RS24075 () | 16933..18141 | - | 1209 | WP_114050483.1 | IS4-like element ISVsa5 family transposase | - |
| DOE58_RS24080 () | 18508..19245 | + | 738 | WP_000287499.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| DOE58_RS24085 () | 19279..19476 | - | 198 | WP_000843501.1 | DUF2933 domain-containing protein | - |
| DOE58_RS24090 () | 19517..21994 | - | 2478 | WP_011251358.1 | Ag(+)-translocating P-type ATPase SilP | - |
| DOE58_RS24095 () | 22092..22532 | - | 441 | WP_023281088.1 | hypothetical protein | - |
| DOE58_RS24100 () | 22619..25765 | - | 3147 | WP_011251357.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| DOE58_RS24105 () | 25776..27068 | - | 1293 | WP_001398209.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| DOE58_RS24110 () | 27182..27535 | - | 354 | WP_001246155.1 | cation efflux system protein CusF | - |
| DOE58_RS24115 () | 27563..28948 | - | 1386 | WP_000475509.1 | Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC | - |
| DOE58_RS24125 () | 29138..29818 | + | 681 | WP_000697965.1 | copper/silver response regulator transcription factor SilR | - |
| DOE58_RS24130 () | 29811..31286 | + | 1476 | WP_052895269.1 | copper/silver sensor histidine kinase SilS | - |
| DOE58_RS24135 () | 31537..31968 | + | 432 | WP_000790483.1 | silver-binding protein SilE | - |
| DOE58_RS24140 () | 32112..32462 | + | 351 | WP_000694953.1 | DUF305 domain-containing protein | - |
| DOE58_RS24145 () | 32850..33758 | - | 909 | WP_001372261.1 | HNH endonuclease | - |
| DOE58_RS24150 () | 34396..35370 | + | 975 | WP_011251353.1 | sensor domain-containing diguanylate cyclase | - |
| DOE58_RS24160 () | 35951..36310 | + | 360 | WP_052895270.1 | hypothetical protein | - |
| DOE58_RS24165 () | 36347..37036 | + | 690 | WP_000796228.1 | hypothetical protein | - |
| DOE58_RS24170 () | 37033..37821 | + | 789 | WP_000016498.1 | site-specific integrase | - |
| DOE58_RS24175 () | 38001..38645 | + | 645 | WP_001144036.1 | ParA family protein | - |
| DOE58_RS24180 () | 38732..39040 | + | 309 | WP_000048808.1 | hypothetical protein | - |
| DOE58_RS24185 () | 39454..40434 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| DOE58_RS24190 () | 40427..40843 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| DOE58_RS24195 () | 40845..42119 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| DOE58_RS24200 () | 42119..42556 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| DOE58_RS24205 () | 42553..42801 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| DOE58_RS24215 () | 43195..44121 | + | 927 | WP_052895271.1 | DUF1281 domain-containing protein | - |
| DOE58_RS24220 () | 44118..44429 | + | 312 | WP_065304464.1 | hypothetical protein | - |
| DOE58_RS24225 () | 44505..45188 | + | 684 | WP_001599378.1 | DNA methylase | - |
| DOE58_RS24230 () | 45189..45410 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| DOE58_RS24235 () | 45424..45858 | + | 435 | WP_000274502.1 | DUF1380 family protein | - |
| DOE58_RS24890 () | 45903..46673 | + | 771 | WP_001006206.1 | hypothetical protein | - |
| DOE58_RS24250 () | 47091..47516 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| DOE58_RS24255 () | 47563..47985 | + | 423 | WP_058647586.1 | DUF1380 family protein | - |
| DOE58_RS24260 () | 47982..48173 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| DOE58_RS24270 () | 48244..48558 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| DOE58_RS24280 () | 48942..49469 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| DOE58_RS24285 () | 49527..49760 | + | 234 | WP_052895272.1 | DUF905 domain-containing protein | - |
| DOE58_RS24290 () | 49819..51777 | + | 1959 | WP_052895273.1 | ParB/RepB/Spo0J family partition protein | - |
| DOE58_RS24295 () | 51832..52266 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| DOE58_RS24300 () | 52263..52982 | + | 720 | WP_001276260.1 | plasmid SOS inhibition protein A | - |
| DOE58_RS24305 () | 53112..54287 | + | 1176 | WP_000942657.1 | transposase | - |
| DOE58_RS24315 () | 54735..55235 | + | 501 | WP_000117627.1 | antirestriction protein ArdA | - |
| DOE58_RS24330 () | 55964..56398 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| DOE58_RS24335 () | 56492..56758 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| DOE58_RS24340 () | 56823..57764 | + | 942 | WP_000038340.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| DOE58_RS24345 () | 57826..58032 | + | 207 | WP_000150315.1 | hypothetical protein | - |
| DOE58_RS24350 () | 58063..58314 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| DOE58_RS24355 () | 58348..58545 | - | 198 | WP_001161115.1 | hypothetical protein | - |
| DOE58_RS24365 () | 58894..59742 | + | 849 | WP_052895274.1 | DUF4942 domain-containing protein | - |
| DOE58_RS24370 () | 59828..60163 | - | 336 | WP_001599393.1 | hypothetical protein | - |
| DOE58_RS24375 () | 60397..60729 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| DOE58_RS24380 () | 60740..63439 | + | 2700 | WP_072105762.1 | IncI1-type relaxase NikB | - |
| DOE58_RS24385 () | 63477..65768 | - | 2292 | WP_072800778.1 | conjugal transfer protein TrbC | - |
| DOE58_RS24390 () | 65761..66831 | - | 1071 | WP_052895276.1 | IncI1-type conjugal transfer protein TrbB | - |
| DOE58_RS24395 () | 66850..68058 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| DOE58_RS24400 () | 68426..69766 | + | 1341 | WP_001597880.1 | ISNCY family transposase | - |
| DOE58_RS24410 () | 70203..70535 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| DOE58_RS24415 () | 70738..71043 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| DOE58_RS24420 () | 71068..71307 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| DOE58_RS24425 () | 71307..71594 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| DOE58_RS24430 () | 71666..71818 | + | 153 | WP_001303307.1 | Hok/Gef family protein | - |
| DOE58_RS24435 () | 71890..72141 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| DOE58_RS25030 () | 73419..73556 | - | 138 | WP_049290858.1 | hypothetical protein | - |
| DOE58_RS24455 () | 73601..74827 | - | 1227 | WP_052895285.1 | transposase | - |
| DOE58_RS24460 () | 75469..75678 | + | 210 | WP_052895278.1 | HEAT repeat domain-containing protein | - |
| DOE58_RS24465 () | 75750..76412 | - | 663 | WP_052895279.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| DOE58_RS24470 () | 76483..78654 | - | 2172 | WP_052895280.1 | DotA/TraY family protein | - |
| DOE58_RS24475 () | 78751..79335 | - | 585 | WP_021013262.1 | IncI1-type conjugal transfer protein TraX | - |
| DOE58_RS24480 () | 79364..80566 | - | 1203 | WP_001690627.1 | IncI1-type conjugal transfer protein TraW | - |
| DOE58_RS24485 () | 80533..81147 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| DOE58_RS24490 () | 81147..84191 | - | 3045 | WP_052895281.1 | IncI1-type conjugal transfer protein TraU | - |
| DOE58_RS24495 () | 84281..85081 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| DOE58_RS24500 () | 85065..85253 | - | 189 | WP_052895282.1 | putative conjugal transfer protein TraS | - |
| DOE58_RS24505 () | 85317..85721 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| DOE58_RS24510 () | 85772..86299 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| DOE58_RS24515 () | 86299..87003 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| DOE58_RS24520 () | 87003..88292 | - | 1290 | WP_001271995.1 | conjugal transfer protein TraO | - |
| DOE58_RS24525 () | 88295..89278 | - | 984 | WP_001191877.1 | IncI1-type conjugal transfer protein TraN | - |
| DOE58_RS24530 () | 89289..89981 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| DOE58_RS24535 () | 89978..90325 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| DOE58_RS24540 () | 90343..94110 | - | 3768 | WP_052895283.1 | DNA primase | - |
| DOE58_RS24545 () | 94200..94745 | - | 546 | WP_181823318.1 | phospholipase D family protein | - |
| DOE58_RS24550 () | 94786..96014 | + | 1229 | WP_103758541.1 | IS3 family transposase | - |
| DOE58_RS24555 () | 96101..96391 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| DOE58_RS24560 () | 96388..97536 | - | 1149 | WP_001024972.1 | plasmid transfer ATPase TraJ | - |
| DOE58_RS24565 () | 97533..98351 | - | 819 | WP_032310251.1 | IncI1-type conjugal transfer lipoprotein TraI | - |
| DOE58_RS24570 () | 98348..98806 | - | 459 | WP_001079808.1 | IncI1-type conjugal transfer lipoprotein TraH | - |
| DOE58_RS24575 () | 99201..99785 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| DOE58_RS24580 () | 99845..101047 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| DOE58_RS24585 () | 101133..101957 | - | 825 | WP_001545755.1 | hypothetical protein | - |
| DOE58_RS24590 () | 102108..103262 | - | 1155 | WP_052895294.1 | integrase | - |
| DOE58_RS24595 () | 103261..103536 | + | 276 | WP_000958118.1 | hypothetical protein | - |
| DOE58_RS24600 () | 103533..104969 | - | 1437 | WP_181823317.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| DOE58_RS24605 () | 104957..105613 | - | 657 | WP_001193549.1 | prepilin peptidase | - |
| DOE58_RS24610 () | 105598..106158 | - | 561 | WP_000014005.1 | lytic transglycosylase domain-containing protein | - |
| DOE58_RS24615 () | 106168..106782 | - | 615 | WP_000908226.1 | type IV prepilin | - |
| DOE58_RS24620 () | 106799..107884 | - | 1086 | WP_001208802.1 | type II secretion system F family protein | - |
| DOE58_RS24625 () | 107897..109450 | - | 1554 | WP_000362206.1 | Flp pilus assembly complex ATPase component TadA | - |
| DOE58_RS24630 () | 109461..109913 | - | 453 | WP_001247337.1 | type IV pilus biogenesis protein PilP | - |
| DOE58_RS24635 () | 109900..111195 | - | 1296 | WP_058799196.1 | type 4b pilus protein PilO2 | - |
| DOE58_RS24640 () | 111188..112870 | - | 1683 | WP_000748143.1 | PilN family type IVB pilus formation outer membrane protein | - |
| DOE58_RS24645 () | 112884..113321 | - | 438 | WP_000539807.1 | type IV pilus biogenesis protein PilM | - |
| DOE58_RS24650 () | 113321..114388 | - | 1068 | WP_001360287.1 | type IV pilus biogenesis lipoprotein PilL | - |
| DOE58_RS24665 () | 115360..115620 | - | 261 | WP_022630593.1 | hypothetical protein | - |
| DOE58_RS24675 () | 115881..116135 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| DOE58_RS24680 () | 116307..116990 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| DOE58_RS24685 () | 117243..117776 | - | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| DOE58_RS24695 () | 118218..118505 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| DOE58_RS24700 () | 118423..118686 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|