MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 137256 bp
Accession: NZ_CP029536 Location: 1544693..1681948 Organism: Lacticaseibacillus paracasei strain LC355 Replicon: chromosome
Accession: NZ_CP029536 Location: 1544693..1681948 Organism: Lacticaseibacillus paracasei strain LC355 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DKM32_RS07755 () | 1540655..1541554 | + | 900 | WP_003577889.1 | shikimate dehydrogenase | - |
| DKM32_RS07760 () | 1541999..1542814 | + | 816 | WP_003573694.1 | homoserine O-succinyltransferase | - |
| DKM32_RS07765 () | 1542848..1543777 | + | 930 | WP_003577893.1 | cysteine synthase A | - |
| DKM32_RS07770 () | 1543967..1544512 | - | 546 | WP_003577895.1 | hypothetical protein | - |
| DKM32_RS07780 () | 1544833..1546002 | - | 1170 | WP_003569067.1 | IS91 family transposase ISCARN110 | Transposase |
| DKM32_RS07785 () | 1546115..1546375 | - | 261 | WP_003606553.1 | hypothetical protein | - |
| DKM32_RS07790 () | 1546406..1547326 | - | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| DKM32_RS07795 () | 1547519..1548139 | + | 621 | WP_003586911.1 | hypothetical protein | - |
| DKM32_RS07800 () | 1548123..1548302 | - | 180 | WP_016365098.1 | hypothetical protein | - |
| DKM32_RS07810 () | 1548552..1549259 | - | 708 | WP_003586913.1 | zinc ribbon domain-containing protein | - |
| DKM32_RS07815 () | 1549418..1549840 | - | 423 | WP_003572182.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DKM32_RS07820 () | 1549833..1550186 | - | 354 | WP_003572184.1 | helix-turn-helix transcriptional regulator | - |
| DKM32_RS07825 () | 1550430..1550678 | + | 249 | WP_003574003.1 | hypothetical protein | - |
| DKM32_RS07830 () | 1550720..1550920 | + | 201 | WP_003572187.1 | hypothetical protein | - |
| DKM32_RS07835 () | 1550891..1551724 | - | 834 | WP_003586916.1 | TIGR02391 family protein | - |
| DKM32_RS07840 () | 1551785..1552543 | + | 759 | WP_010493122.1 | ORF6C domain-containing protein | - |
| DKM32_RS07845 () | 1552544..1552723 | + | 180 | WP_003572193.1 | hypothetical protein | - |
| DKM32_RS07850 () | 1552716..1552967 | - | 252 | WP_003606636.1 | DUF1883 domain-containing protein | - |
| DKM32_RS07855 () | 1553033..1553389 | + | 357 | WP_003586919.1 | DUF771 domain-containing protein | - |
| DKM32_RS07865 () | 1553474..1553677 | + | 204 | WP_003572201.1 | hypothetical protein | - |
| DKM32_RS07870 () | 1553660..1554205 | - | 546 | WP_003586921.1 | hypothetical protein | - |
| DKM32_RS07875 () | 1554386..1554700 | + | 315 | WP_003661649.1 | hypothetical protein | - |
| DKM32_RS07880 () | 1554693..1555439 | + | 747 | WP_003586926.1 | DnaD domain protein | - |
| DKM32_RS07885 () | 1555454..1556278 | + | 825 | WP_003574014.1 | ATP-binding protein | - |
| DKM32_RS07890 () | 1556278..1556796 | + | 519 | WP_003574016.1 | exonuclease domain-containing protein | - |
| DKM32_RS07895 () | 1556843..1557265 | + | 423 | WP_003564822.1 | hypothetical protein | - |
| DKM32_RS07900 () | 1557267..1558004 | + | 738 | WP_003572217.1 | hypothetical protein | - |
| DKM32_RS07905 () | 1558016..1558303 | + | 288 | WP_010493149.1 | hypothetical protein | - |
| DKM32_RS07910 () | 1558373..1558705 | + | 333 | WP_003586929.1 | hypothetical protein | - |
| DKM32_RS07920 () | 1559220..1559663 | + | 444 | WP_010493154.1 | autolysin regulatory protein arpU | - |
| DKM32_RS07925 () | 1560176..1560829 | + | 654 | WP_003586931.1 | hypothetical protein | - |
| DKM32_RS07930 () | 1561080..1562076 | + | 997 | Protein_1447 | IS30 family transposase ISApl1 | Transposase |
| DKM32_RS07935 () | 1562272..1562490 | - | 219 | WP_003573729.1 | CsbD family protein | - |
| DKM32_RS07940 () | 1562913..1564129 | + | 1217 | Protein_1449 | hypothetical protein | - |
| DKM32_RS07945 () | 1564116..1564451 | + | 336 | WP_010493173.1 | ribonucleoside-diphosphate reductase | - |
| DKM32_RS07955 () | 1564613..1564945 | + | 333 | WP_076626284.1 | IS3 family transposase IS1163 | Transposase |
| DKM32_RS07960 () | 1564975..1565703 | + | 729 | WP_003582147.1 | IS3 family transposase ISSth1b | Transposase |
| DKM32_RS07965 () | 1565637..1566578 | + | 942 | WP_014951815.1 | IS3 family transposase ISSth1b | Transposase |
| DKM32_RS07970 () | 1566624..1567487 | + | 864 | WP_099973802.1 | IS3 family transposase IS1520 | Transposase |
| DKM32_RS07985 () | 1568169..1568447 | + | 279 | WP_003586951.1 | hypothetical protein | - |
| DKM32_RS07990 () | 1568459..1568725 | + | 267 | WP_014566886.1 | hypothetical protein | - |
| DKM32_RS07995 () | 1568749..1570332 | + | 1584 | WP_003586954.1 | hypothetical protein | VF |
| DKM32_RS08000 () | 1570351..1570827 | + | 477 | WP_003586956.1 | PcfB family protein | - |
| DKM32_RS08005 () | 1570827..1572728 | + | 1902 | WP_003586959.1 | type IV secretory system conjugative DNA transfer family protein | - |
| DKM32_RS08010 () | 1572746..1572952 | + | 207 | WP_003571730.1 | hypothetical protein | - |
| DKM32_RS08015 () | 1572972..1573805 | + | 834 | WP_003606870.1 | hypothetical protein | - |
| DKM32_RS08020 () | 1573823..1574194 | + | 372 | WP_016363322.1 | PrgI family protein | - |
| DKM32_RS08025 () | 1574142..1576598 | + | 2457 | WP_049176859.1 | ATP-binding protein | - |
| DKM32_RS08030 () | 1576588..1579065 | + | 2478 | WP_003586967.1 | CHAP domain-containing protein | - |
| DKM32_RS08035 () | 1579079..1579603 | + | 525 | WP_003586970.1 | hypothetical protein | - |
| DKM32_RS08040 () | 1579621..1579851 | + | 231 | WP_003586972.1 | hypothetical protein | - |
| DKM32_RS08045 () | 1579887..1581032 | + | 1146 | WP_003586973.1 | hypothetical protein | - |
| DKM32_RS08050 () | 1581050..1582024 | + | 975 | WP_016363319.1 | DNA primase | - |
| DKM32_RS08055 () | 1582112..1582387 | + | 276 | WP_003589454.1 | hypothetical protein | - |
| DKM32_RS08065 () | 1582634..1583035 | + | 402 | WP_016363316.1 | MobC family plasmid mobilization relaxosome protein | - |
| DKM32_RS08070 () | 1583007..1585214 | + | 2208 | WP_003606873.1 | relaxase/mobilization nuclease domain-containing protein | - |
| DKM32_RS08075 () | 1585259..1586650 | + | 1392 | WP_003589449.1 | DUF3991 domain-containing protein | - |
| DKM32_RS16365 () | 1587827..1587898 | + | 72 | Protein_1474 | LtrC-like protein | - |
| DKM32_RS08090 () | 1588103..1588294 | - | 192 | WP_080543852.1 | transposase | - |
| DKM32_RS08095 () | 1588482..1589240 | + | 759 | WP_003587165.1 | MurR/RpiR family transcriptional regulator | - |
| DKM32_RS08100 () | 1589358..1591031 | + | 1674 | WP_003587163.1 | PTS transporter subunit EIIC | - |
| DKM32_RS08105 () | 1591044..1591814 | + | 771 | WP_003587161.1 | HAD-IIB family hydrolase | - |
| DKM32_RS08110 () | 1591829..1592314 | + | 486 | WP_016363706.1 | PTS glucose transporter subunit IIA | - |
| DKM32_RS08115 () | 1592457..1593244 | + | 788 | WP_099973803.1 | IS5 family transposase ISCaa8 | Transposase |
| DKM32_RS08120 () | 1593299..1593829 | + | 531 | WP_003587154.1 | hypothetical protein | - |
| DKM32_RS08125 () | 1593844..1594803 | + | 960 | WP_003587152.1 | D-2-hydroxyacid dehydrogenase | - |
| DKM32_RS08130 () | 1594921..1595307 | - | 387 | WP_003587151.1 | hypothetical protein | - |
| DKM32_RS08135 () | 1595300..1595620 | - | 321 | WP_016363695.1 | hypothetical protein | - |
| DKM32_RS08140 () | 1595613..1596920 | - | 1308 | WP_191989233.1 | Y-family DNA polymerase | - |
| DKM32_RS08150 () | 1597439..1598698 | - | 1260 | WP_003606688.1 | restriction endonuclease subunit S | - |
| DKM32_RS08155 () | 1598695..1600311 | - | 1617 | WP_003587143.1 | type I restriction-modification system subunit M | - |
| DKM32_RS08160 () | 1600325..1603492 | - | 3168 | WP_112199580.1 | type I restriction endonuclease subunit R | - |
| DKM32_RS08165 () | 1603627..1604541 | + | 915 | WP_003587138.1 | hypothetical protein | - |
| DKM32_RS08170 () | 1605056..1606111 | + | 1056 | WP_003587134.1 | IS30 family transposase ISCth3 | Transposase |
| DKM32_RS08180 () | 1606368..1607090 | + | 723 | WP_003587133.1 | nitroreductase family protein | - |
| DKM32_RS08185 () | 1607192..1607380 | + | 189 | WP_003587131.1 | type I toxin-antitoxin system Fst family toxin | - |
| DKM32_RS08190 () | 1607467..1608051 | + | 585 | WP_003587130.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| DKM32_RS08195 () | 1608138..1609034 | + | 897 | Protein_1494 | PrsW family intramembrane metalloprotease | - |
| DKM32_RS08200 () | 1609056..1609976 | - | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| DKM32_RS08205 () | 1610087..1610356 | + | 270 | Protein_1496 | PrsW family intramembrane metalloprotease | - |
| DKM32_RS08215 () | 1610811..1611062 | + | 252 | WP_003586983.1 | IS3 family transposase IS153 | Transposase |
| DKM32_RS08220 () | 1611116..1611958 | + | 843 | WP_029327644.1 | IS3 family transposase ISBce13 | Transposase |
| DKM32_RS08225 () | 1612119..1612580 | - | 462 | Protein_1499 | IS3 family transposase IS1223 | Transposase |
| DKM32_RS08230 () | 1612593..1612856 | - | 264 | WP_003587109.1 | hypothetical protein | - |
| DKM32_RS08235 () | 1612916..1615738 | - | 2823 | WP_003587111.1 | cation-transporting P-type ATPase | - |
| DKM32_RS08245 () | 1616047..1616834 | + | 788 | WP_099973805.1 | IS5 family transposase ISCaa8 | Transposase |
| DKM32_RS16370 () | 1616831..1616992 | - | 162 | WP_016363761.1 | hypothetical protein | - |
| DKM32_RS08255 () | 1617351..1617938 | - | 588 | WP_003586668.1 | hypothetical protein ; Integrase | Integrase |
| DKM32_RS08260 () | 1618015..1618293 | + | 279 | WP_003586674.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| DKM32_RS08265 () | 1618293..1618667 | + | 375 | WP_003586676.1 | type II toxin-antitoxin system YafQ family toxin | - |
| DKM32_RS08270 () | 1618937..1620352 | - | 1416 | WP_016365202.1 | IS5 family transposase ISLca2 | Transposase |
| DKM32_RS08275 () | 1620761..1621228 | + | 468 | WP_003587210.1 | DNA starvation/stationary phase protection protein | - |
| DKM32_RS08280 () | 1621475..1622218 | + | 744 | WP_003587212.1 | ABC transporter ATP-binding protein | - |
| DKM32_RS08285 () | 1622196..1623443 | + | 1248 | WP_010620835.1 | ABC transporter permease | - |
| DKM32_RS08290 () | 1623448..1624119 | + | 672 | WP_003587215.1 | TetR/AcrR family transcriptional regulator | - |
| DKM32_RS08295 () | 1624223..1624960 | - | 738 | Protein_1512 | nicotinate phosphoribosyltransferase | - |
| DKM32_RS08305 () | 1625023..1625468 | + | 446 | Protein_1513 | IS5 family transposase ISCARN82 | Transposase |
| DKM32_RS08310 () | 1625532..1626549 | + | 1018 | Protein_1514 | IS30 family transposase ISSag3 | Transposase |
| DKM32_RS08315 () | 1626670..1627218 | - | 549 | WP_003582473.1 | DNA-binding protein | - |
| DKM32_RS08320 () | 1627228..1627449 | - | 222 | WP_003582479.1 | cation transporter | - |
| DKM32_RS08325 () | 1627491..1629389 | - | 1899 | WP_016363699.1 | heavy metal translocating P-type ATPase | - |
| DKM32_RS08330 () | 1629624..1629926 | - | 303 | Protein_1518 | IS5 family transposase ISLrh3 | Transposase |
| DKM32_RS08345 () | 1631003..1631434 | + | 432 | WP_003607154.1 | CopY/TcrY family copper transport repressor | - |
| DKM32_RS08350 () | 1631685..1633952 | + | 2268 | WP_003589066.1 | copper-translocating P-type ATPase | - |
| DKM32_RS08355 () | 1634027..1634353 | - | 327 | Protein_1522 | MFS transporter | - |
| DKM32_RS08360 () | 1634375..1634664 | - | 290 | Protein_1523 | IS5 family transposase ISCARN82 | Transposase |
| DKM32_RS08365 () | 1634724..1634945 | - | 222 | Protein_1524 | IS3 family transposase IS153 | Transposase |
| DKM32_RS08370 () | 1635142..1636674 | + | 1533 | WP_003606758.1 | ABC transporter permease/substrate-binding protein | - |
| DKM32_RS08375 () | 1636674..1637612 | + | 939 | WP_003606756.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| DKM32_RS08380 () | 1637842..1638903 | + | 1062 | WP_003589055.1 | ABC transporter permease | - |
| DKM32_RS08385 () | 1638908..1639579 | + | 672 | WP_003606755.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| DKM32_RS08395 () | 1639686..1640369 | + | 684 | WP_049169626.1 | IS6 family transposase ISBth20 | Transposase |
| DKM32_RS08400 () | 1640612..1641040 | - | 429 | WP_003586786.1 | hypothetical protein | - |
| DKM32_RS08410 () | 1641229..1641894 | - | 666 | Protein_1531 | IS30 family transposase ISApl1 | Transposase |
| DKM32_RS08415 () | 1642033..1643448 | + | 1416 | WP_019890870.1 | IS5 family transposase ISLca2 | Transposase |
| DKM32_RS08420 () | 1643614..1645785 | - | 2172 | WP_003607130.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| DKM32_RS08425 () | 1645957..1646946 | + | 990 | WP_003586769.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| DKM32_RS08430 () | 1646943..1647428 | + | 486 | WP_003586772.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| DKM32_RS08440 () | 1648160..1648402 | + | 243 | WP_016363783.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| DKM32_RS08445 () | 1648395..1648676 | + | 282 | WP_003573774.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| DKM32_RS08455 () | 1649058..1649309 | + | 252 | WP_003586983.1 | IS3 family transposase IS153 | Transposase |
| DKM32_RS08460 () | 1649363..1650205 | + | 843 | WP_029327644.1 | IS3 family transposase ISBce13 | Transposase |
| DKM32_RS08465 () | 1650326..1650628 | + | 303 | Protein_1540 | DUF1722 domain-containing protein | - |
| DKM32_RS08470 () | 1650873..1651982 | - | 1110 | WP_003607129.1 | hypothetical protein | - |
| DKM32_RS08475 () | 1651984..1653426 | - | 1443 | WP_003586782.1 | hypothetical protein | - |
| DKM32_RS08480 () | 1653671..1654591 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| DKM32_RS08490 () | 1654754..1655437 | + | 684 | WP_003586785.1 | IS6 family transposase ISBth20 | Transposase |
| DKM32_RS08495 () | 1655770..1658538 | + | 2769 | WP_003607349.1 | CRISPR-associated helicase/endonuclease Cas3 | - |
| DKM32_RS08500 () | 1658519..1660228 | + | 1710 | WP_003586647.1 | type I-E CRISPR-associated protein Cse1/CasA | - |
| DKM32_RS08505 () | 1660225..1660827 | + | 603 | WP_003586648.1 | type I-E CRISPR-associated protein Cse2/CasB | - |
| DKM32_RS08510 () | 1660820..1661905 | + | 1086 | WP_112199638.1 | type I-E CRISPR-associated protein Cas7/Cse4/CasC | - |
| DKM32_RS08515 () | 1661877..1662587 | + | 711 | WP_003586652.1 | type I-E CRISPR-associated protein Cas5/CasD | - |
| DKM32_RS08520 () | 1662603..1663250 | + | 648 | WP_003586654.1 | type I-E CRISPR-associated protein Cas6/Cse3/CasE | - |
| DKM32_RS08525 () | 1663255..1664202 | + | 948 | WP_003586656.1 | type I-E CRISPR-associated endonuclease Cas1 | - |
| DKM32_RS08530 () | 1664199..1665104 | + | 906 | WP_003586658.1 | type I-E CRISPR-associated endoribonuclease Cas2 | - |
| DKM32_RS08535 () | 1669208..1669891 | + | 684 | WP_002816607.1 | IS6 family transposase ISBth20 | Transposase |
| DKM32_RS08540 () | 1669937..1670131 | + | 195 | WP_112199639.1 | DUF1722 domain-containing protein | - |
| DKM32_RS16260 () | 1670457..1670840 | + | 384 | Protein_1555 | ISLre2 family transposase ISLrh4 | Transposase |
| DKM32_RS08550 () | 1670899..1671685 | + | 787 | WP_099973807.1 | IS5 family transposase ISCaa8 | Transposase |
| DKM32_RS08555 () | 1671672..1671929 | - | 258 | WP_032771275.1 | hypothetical protein | - |
| DKM32_RS08560 () | 1672207..1672764 | - | 558 | WP_003567312.1 | hypothetical protein | - |
| DKM32_RS08565 () | 1672965..1674293 | - | 1329 | WP_003587117.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| DKM32_RS08570 () | 1674472..1675155 | - | 684 | WP_002816607.1 | IS6 family transposase ISBth20 | Transposase |
| DKM32_RS08580 () | 1675369..1676289 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| DKM32_RS08585 () | 1676311..1676577 | - | 267 | Protein_1562 | IS3 family transposase IS153 | Transposase |
| DKM32_RS08590 () | 1676762..1677244 | + | 483 | WP_003589537.1 | PTS glucose transporter subunit IIA | - |
| DKM32_RS08595 () | 1677305..1677634 | + | 330 | WP_080596909.1 | IS3 family transposase IS1163 | Transposase |
| DKM32_RS08600 () | 1677644..1678585 | - | 942 | WP_014951815.1 | IS3 family transposase ISSth1b | Transposase |
| DKM32_RS08605 () | 1678519..1679247 | - | 729 | WP_003582147.1 | IS3 family transposase ISSth1b | Transposase |
| DKM32_RS08610 () | 1679316..1680179 | + | 864 | WP_016379844.1 | IS3 family transposase IS1520 | Transposase |
| DKM32_RS08620 () | 1680339..1681310 | + | 972 | WP_032771614.1 | LysM peptidoglycan-binding domain-containing protein | - |
| DKM32_RS08625 () | 1681994..1682782 | + | 789 | WP_003587240.1 | hypothetical protein | - |
| DKM32_RS08630 () | 1682868..1684004 | - | 1137 | WP_003587241.1 | PLP-dependent transferase | - |
| DKM32_RS08635 () | 1684106..1684918 | - | 813 | WP_003587242.1 | transporter substrate-binding domain-containing protein | - |
| DKM32_RS08640 () | 1684950..1685663 | - | 714 | WP_003573812.1 | amino acid ABC transporter permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|