MGE detailed information
MGE type: IScluster/Tn MGE length: 68227 bp
Accession: NZ_CP029493 Location: 31049..99275 Organism: Escherichia coli strain HS30-1 Replicon: plasmid pHS30-1
Accession: NZ_CP029493 Location: 31049..99275 Organism: Escherichia coli strain HS30-1 Replicon: plasmid pHS30-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DKQ63_RS23035 () | 27108..27692 | + | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| DKQ63_RS23045 () | 28097..28789 | - | 693 | WP_064145616.1 | hypothetical protein | - |
| DKQ63_RS23050 () | 28897..29115 | + | 219 | WP_042881802.1 | hypothetical protein | - |
| DKQ63_RS23055 () | 29135..29575 | + | 441 | WP_162852153.1 | phage regulatory CII family protein | - |
| DKQ63_RS23060 () | 29547..30311 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| DKQ63_RS23065 () | 30418..30921 | + | 504 | Protein_31 | permease | - |
| DKQ63_RS23070 () | 31049..31453 | - | 405 | Protein_32 | recombinase family protein | - |
| DKQ63_RS23075 () | 31621..34608 | + | 2988 | WP_104769218.1 | Tn3 family transposase | - |
| DKQ63_RS23080 () | 34632..34994 | - | 363 | Protein_34 | hypothetical protein | - |
| DKQ63_RS23085 () | 35057..35506 | - | 450 | WP_001282381.1 | H-NS histone family protein | - |
| DKQ63_RS23090 () | 35518..37842 | - | 2325 | WP_001235773.1 | type IA DNA topoisomerase | - |
| DKQ63_RS23095 () | 37862..38107 | - | 246 | WP_001243650.1 | hypothetical protein | - |
| DKQ63_RS23100 () | 38522..38992 | - | 471 | WP_000689410.1 | thermonuclease family protein | - |
| DKQ63_RS23105 () | 39120..39956 | - | 837 | WP_000480972.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| DKQ63_RS23110 () | 39956..40759 | - | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| DKQ63_RS23115 () | 40820..41635 | - | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| DKQ63_RS23130 () | 41820..42503 | - | 684 | Protein_42 | replication protein C | - |
| DKQ63_RS23135 () | 42567..43271 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| DKQ63_RS23140 () | 43325..45634 | + | 2310 | Protein_44 | Tn3 family transposase | - |
| DKQ63_RS23145 () | 45657..45917 | - | 261 | Protein_45 | PAS domain-containing protein | - |
| DKQ63_RS23155 () | 45927..46631 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| DKQ63_RS23160 () | 46836..47627 | - | 792 | WP_001206356.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 | - |
| DKQ63_RS23165 () | 47633..47923 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| DKQ63_RS23170 () | 48035..48532 | - | 498 | WP_001083725.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | - |
| DKQ63_RS23175 () | 48677..48874 | + | 198 | Protein_50 | phage integrase N-terminal SAM-like domain-containing protein | - |
| DKQ63_RS23180 () | 48937..49641 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| DKQ63_RS23185 () | 49831..50646 | - | 816 | WP_000018329.1 | aminoglycoside O-phosphotransferase APH(3')-Ia | - |
| DKQ63_RS23190 () | 50797..51501 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| DKQ63_RS23195 () | 51732..52595 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| DKQ63_RS23200 () | 52633..52878 | + | 246 | WP_001354008.1 | GrpB family protein | - |
| DKQ63_RS23205 () | 53347..54138 | + | 792 | WP_000034420.1 | sulfonamide-resistant dihydropteroate synthase Sul3 | - |
| DKQ63_RS24210 () | 54141..54416 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| DKQ63_RS23210 () | 54418..55053 | + | 636 | Protein_58 | transposase | - |
| DKQ63_RS23220 () | 55318..55650 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| DKQ63_RS23225 () | 55820..56611 | - | 792 | WP_001206316.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | - |
| DKQ63_RS23230 () | 56704..57963 | - | 1260 | WP_000095725.1 | chloramphenicol efflux MFS transporter CmlA1 | - |
| DKQ63_RS23235 () | 58225..59016 | - | 792 | WP_001261740.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 | - |
| DKQ63_RS23240 () | 59074..59682 | - | 609 | WP_000050382.1 | HAD-IB family hydrolase | - |
| DKQ63_RS23245 () | 59778..60620 | - | 843 | WP_001456218.1 | alpha/beta fold putative hydrolase EstX | - |
| DKQ63_RS23250 () | 60787..61800 | + | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| DKQ63_RS24215 () | 62003..62353 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| DKQ63_RS23260 () | 62529..63089 | + | 561 | WP_001161490.1 | recombinase family protein | - |
| DKQ63_RS24345 () | 63093..63464 | + | 372 | Protein_68 | DUF4158 domain-containing protein | - |
| DKQ63_RS24350 () | 63444..63689 | + | 246 | WP_041937891.1 | hypothetical protein | - |
| DKQ63_RS23270 () | 63721..64371 | - | 651 | WP_038989485.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| DKQ63_RS23275 () | 64477..65676 | + | 1200 | WP_000804064.1 | tetracycline efflux MFS transporter Tet(A) | - |
| DKQ63_RS23280 () | 65708..66592 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| DKQ63_RS23285 () | 66729..67136 | - | 408 | WP_001214976.1 | cysteine hydrolase | - |
| DKQ63_RS23290 () | 67125..68876 | + | 1752 | Protein_74 | Tn3-like element TnAs1 family transposase | - |
| DKQ63_RS23295 () | 68997..70073 | - | 1077 | WP_000227969.1 | IS110 family transposase | - |
| DKQ63_RS23305 () | 70355..71211 | - | 857 | Protein_76 | IS3 family transposase | - |
| DKQ63_RS23310 () | 71416..71832 | - | 417 | WP_000754566.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DKQ63_RS23315 () | 71829..72059 | - | 231 | WP_001261276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| DKQ63_RS23325 () | 72258..72749 | - | 492 | Protein_79 | IS5-like element ISKpn26 family transposase | - |
| DKQ63_RS23330 () | 72855..73559 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| DKQ63_RS23340 () | 73613..73822 | + | 210 | Protein_81 | IS110 family transposase | - |
| DKQ63_RS23345 () | 74099..74574 | - | 476 | Protein_82 | IS1 family transposase | - |
| DKQ63_RS23350 () | 74967..75995 | + | 1029 | WP_054528934.1 | tyrosine-type recombinase/integrase | - |
| DKQ63_RS23355 () | 76018..76908 | - | 891 | Protein_84 | IS30-like element IS30 family transposase | - |
| DKQ63_RS23360 () | 76958..77926 | - | 969 | WP_077250684.1 | IS5 family transposase | - |
| DKQ63_RS23365 () | 78507..78893 | + | 387 | WP_001039464.1 | hypothetical protein | - |
| DKQ63_RS23375 () | 79033..80001 | - | 969 | WP_020956880.1 | IS5 family transposase | - |
| DKQ63_RS23385 () | 81183..81491 | - | 309 | Protein_88 | RepB family plasmid replication initiator protein | - |
| DKQ63_RS23390 () | 81501..82198 | - | 698 | Protein_89 | IS1 family transposase | - |
| DKQ63_RS23395 () | 82350..83468 | - | 1119 | Protein_90 | group II intron reverse transcriptase/maturase | - |
| DKQ63_RS23405 () | 84803..85337 | + | 535 | Protein_92 | IS3 family transposase | - |
| DKQ63_RS23415 () | 85655..86635 | - | 981 | WP_000019402.1 | IS5-like element IS5 family transposase | - |
| DKQ63_RS23425 () | 86693..87994 | - | 1302 | Protein_94 | TraI domain-containing protein | - |
| DKQ63_RS23430 () | 88005..88727 | - | 723 | WP_000133023.1 | hypothetical protein | - |
| DKQ63_RS23435 () | 88724..89209 | - | 486 | WP_000071636.1 | hypothetical protein | - |
| DKQ63_RS23440 () | 89864..90835 | - | 972 | WP_170386723.1 | IS30-like element ISApl1 family transposase | - |
| DKQ63_RS23445 () | 90928..91650 | - | 723 | WP_039003037.1 | PAP2 family protein | - |
| DKQ63_RS23450 () | 91722..93347 | - | 1626 | WP_049589868.1 | phosphoethanolamine--lipid A transferase MCR-1.1 | - |
| DKQ63_RS23455 () | 93543..94514 | - | 972 | WP_170386723.1 | IS30-like element ISApl1 family transposase | - |
| DKQ63_RS23460 () | 94717..95515 | + | 799 | Protein_101 | trhR | - |
| DKQ63_RS23465 () | 95518..96029 | + | 512 | Protein_102 | hypothetical protein | - |
| DKQ63_RS23470 () | 96643..97689 | + | 1047 | WP_077478202.1 | thioredoxin family protein | - |
| DKQ63_RS23475 () | 97679..98110 | + | 432 | Protein_104 | IncHI-type conjugal transfer protein TrhH | - |
| DKQ63_RS23480 () | 98125..99009 | - | 885 | Protein_105 | IS3-like element ISEc52 family transposase | - |
| DKQ63_RS23485 () | 99057..99275 | + | 219 | Protein_106 | IS91 family transposase | - |
| DKQ63_RS23490 () | 99860..103375 | + | 3516 | WP_104769191.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| DKQ63_RS23495 () | 103550..103755 | - | 206 | Protein_108 | hypothetical protein | - |
| DKQ63_RS23500 () | 103745..103945 | + | 201 | WP_000896262.1 | DUF839 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|