MGE detailed information
MGE type: Prophage MGE length: 52927 bp
Accession: NZ_CP029328 Location: 2466104..2519030 Organism: Escherichia coli strain A1 Replicon: chromosome
Accession: NZ_CP029328 Location: 2466104..2519030 Organism: Escherichia coli strain A1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY52_RS11780 (2461696) | 2461696..2461899 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| AOY52_RS11785 (2461935) | 2461935..2463395 | - | 1461 | WP_000527797.1 | mannitol dehydrogenase family protein | - |
| AOY52_RS11790 (2463484) | 2463484..2464851 | - | 1368 | Protein_2294 | MHS family MFS transporter | - |
| AOY52_RS11795 (2465372) | 2465372..2465485 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| AOY52_RS11800 (2465554) | 2465554..2465787 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| AOY52_RS11805 (2466104) | 2466104..2466694 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| AOY52_RS11810 (2466792) | 2466792..2467367 | - | 576 | WP_000885601.1 | tail fiber assembly protein | - |
| AOY52_RS11815 (2467367) | 2467367..2470765 | - | 3399 | WP_240776568.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AOY52_RS11820 (2470830) | 2470830..2471429 | - | 600 | WP_001233090.1 | Outer membrane protein X | VF |
| AOY52_RS11825 (2471500) | 2471500..2474997 | - | 3498 | WP_000515713.1 | host specificity protein J | - |
| AOY52_RS11830 (2475058) | 2475058..2475630 | - | 573 | WP_000847669.1 | tail assembly protein | - |
| AOY52_RS11835 (2475627) | 2475627..2476370 | - | 744 | WP_000194783.1 | C40 family peptidase | - |
| AOY52_RS11840 (2476376) | 2476376..2477074 | - | 699 | WP_001152639.1 | phage minor tail protein L | - |
| AOY52_RS11845 (2477074) | 2477074..2477403 | - | 330 | WP_000847321.1 | phage tail protein | - |
| AOY52_RS11850 (2477400) | 2477400..2479979 | - | 2580 | WP_115724468.1 | phage tail tape measure protein | - |
| AOY52_RS11855 (2479972) | 2479972..2480406 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| AOY52_RS11860 (2480388) | 2480388..2480810 | - | 423 | WP_000479142.1 | phage minor tail protein G | - |
| AOY52_RS11865 (2480826) | 2480826..2481566 | - | 741 | WP_001358372.1 | phage tail protein | - |
| AOY52_RS11870 (2481646) | 2481646..2483217 | - | 1572 | WP_074676071.1 | IS66 family transposase ISCro1 | Transposase |
| AOY52_RS11875 (2483237) | 2483237..2483584 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| AOY52_RS11880 (2483584) | 2483584..2484261 | - | 678 | WP_001299364.1 | IS66 family transposase ISCro1 | Transposase |
| AOY52_RS11885 (2484311) | 2484311..2484676 | - | 366 | WP_059240357.1 | phage minor tail U family protein | - |
| AOY52_RS11890 (2484673) | 2484673..2485251 | - | 579 | WP_000975081.1 | phage tail protein | - |
| AOY52_RS11895 (2485263) | 2485263..2485616 | - | 354 | WP_000785282.1 | head-tail joining protein | - |
| AOY52_RS11900 (2485628) | 2485628..2485717 | - | 90 | Protein_2316 | DNA-packaging protein FI | - |
| AOY52_RS11910 (2486976) | 2486976..2487284 | - | 309 | Protein_2318 | DNA-packaging protein FI | - |
| AOY52_RS11915 (2487326) | 2487326..2488351 | - | 1026 | WP_000063250.1 | major capsid protein | - |
| AOY52_RS11920 (2488407) | 2488407..2488739 | - | 333 | WP_001358225.1 | head decoration protein | - |
| AOY52_RS11925 (2488749) | 2488749..2490068 | - | 1320 | WP_000123248.1 | S49 family peptidase | - |
| AOY52_RS11930 (2490049) | 2490049..2491650 | - | 1602 | WP_001345555.1 | phage portal protein | - |
| AOY52_RS11935 (2491647) | 2491647..2491853 | - | 207 | WP_000198149.1 | gpW family protein | - |
| AOY52_RS11940 (2491850) | 2491850..2493775 | - | 1926 | WP_047651814.1 | phage terminase large subunit family protein | - |
| AOY52_RS11945 (2493750) | 2493750..2494295 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| AOY52_RS11950 (2494684) | 2494684..2494917 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| AOY52_RS11955 (2494975) | 2494975..2495385 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| AOY52_RS11960 (2495537) | 2495537..2495710 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| AOY52_RS11965 (2495882) | 2495882..2496112 | - | 231 | WP_000720962.1 | protein YnfN | - |
| AOY52_RS11970 (2496117) | 2496117..2496182 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| AOY52_RS11975 (2496185) | 2496185..2496373 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| AOY52_RS11980 (2496384) | 2496384..2496596 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| AOY52_RS11985 (2496959) | 2496959..2497456 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| AOY52_RS11990 (2497453) | 2497453..2497986 | - | 534 | WP_001092971.1 | lysozyme | - |
| AOY52_RS11995 (2497983) | 2497983..2498294 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| AOY52_RS12000 (2498299) | 2498299..2498514 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| AOY52_RS12005 (2498734) | 2498734..2498904 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| AOY52_RS12010 (2499268) | 2499268..2499483 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| AOY52_RS12015 (2499784) | 2499784..2499996 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| AOY52_RS12020 (2500051) | 2500051..2500140 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| AOY52_RS12025 (2500418) | 2500418..2501170 | - | 753 | WP_001047135.1 | antitermination protein | - |
| AOY52_RS12030 (2501184) | 2501184..2502233 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AOY52_RS12035 (2502235) | 2502235..2502513 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| AOY52_RS12040 (2502580) | 2502580..2502831 | - | 252 | WP_000980994.1 | protein Rem | - |
| AOY52_RS12045 (2503048) | 2503048..2503203 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AOY52_RS12050 (2503275) | 2503275..2503562 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| AOY52_RS12055 (2503562) | 2503562..2503801 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| AOY52_RS12060 (2503826) | 2503826..2504131 | + | 306 | WP_001326990.1 | protein YdfV | - |
| AOY52_RS12065 (2504334) | 2504334..2504666 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| AOY52_RS12070 (2505103) | 2505103..2505252 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| AOY52_RS12075 (2505325) | 2505325..2506395 | - | 1071 | Protein_2351 | ISNCY family transposase ISCARN112 | Transposase |
| AOY52_RS12080 (2506900) | 2506900..2507922 | - | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| AOY52_RS12085 (2508747) | 2508747..2509412 | - | 666 | WP_021513618.1 | epoxyqueuosine reductase QueH | - |
| AOY52_RS12090 (2509610) | 2509610..2510008 | - | 399 | WP_001151242.1 | DUF977 family protein | - |
| AOY52_RS12095 (2510049) | 2510049..2511014 | - | 966 | WP_000054487.1 | hypothetical protein | - |
| AOY52_RS12100 (2510995) | 2510995..2511516 | - | 522 | WP_000705347.1 | toxin YdaT family protein | - |
| AOY52_RS12105 (2511500) | 2511500..2511727 | - | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
| AOY52_RS12110 (2511805) | 2511805..2512212 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| AOY52_RS12115 (2512405) | 2512405..2512557 | + | 153 | WP_000379591.1 | DUF1391 family protein | - |
| AOY52_RS12120 (2512569) | 2512569..2512934 | + | 366 | WP_001320327.1 | hypothetical protein | - |
| AOY52_RS12125 (2513243) | 2513243..2513431 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| AOY52_RS12130 (2513428) | 2513428..2513619 | + | 192 | WP_001083273.1 | lysis protein YdfD | - |
| AOY52_RS12135 (2513713) | 2513713..2516184 | + | 2472 | WP_240776490.1 | exonuclease | - |
| AOY52_RS12140 (2516257) | 2516257..2516508 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| AOY52_RS12145 (2516543) | 2516543..2517823 | + | 1281 | WP_024227903.1 | Putative defective protein IntQ ; Integrase | Integrase |
| AOY52_RS12150 (2518011) | 2518011..2519030 | - | 1020 | WP_000836082.1 | Zn-dependent oxidoreductase | - |
| AOY52_RS12155 (2519042) | 2519042..2520256 | - | 1215 | WP_001296944.1 | starvation-sensing protein RspA | - |
| AOY52_RS12160 (2520462) | 2520462..2520788 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| AOY52_RS12165 (2520923) | 2520923..2521264 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| AOY52_RS12170 (2521299) | 2521299..2521859 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| AOY52_RS12175 (2521862) | 2521862..2522572 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| AOY52_RS12180 (2522680) | 2522680..2522985 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|