Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2503275..2503801 | Replicon | chromosome |
| Accession | NZ_CP029328 | ||
| Organism | Escherichia coli strain A1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | AOY52_RS12050 | Protein ID | WP_000323025.1 |
| Coordinates | 2503275..2503562 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | AOY52_RS12055 | Protein ID | WP_000534858.1 |
| Coordinates | 2503562..2503801 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY52_RS12000 (2498299) | 2498299..2498514 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| AOY52_RS12005 (2498734) | 2498734..2498904 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| AOY52_RS12010 (2499268) | 2499268..2499483 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| AOY52_RS12015 (2499784) | 2499784..2499996 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| AOY52_RS12020 (2500051) | 2500051..2500140 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| AOY52_RS12025 (2500418) | 2500418..2501170 | - | 753 | WP_001047135.1 | antitermination protein | - |
| AOY52_RS12030 (2501184) | 2501184..2502233 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AOY52_RS12035 (2502235) | 2502235..2502513 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| AOY52_RS12040 (2502580) | 2502580..2502831 | - | 252 | WP_000980994.1 | protein Rem | - |
| AOY52_RS12045 (2503048) | 2503048..2503203 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AOY52_RS12050 (2503275) | 2503275..2503562 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| AOY52_RS12055 (2503562) | 2503562..2503801 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| AOY52_RS12060 (2503826) | 2503826..2504131 | + | 306 | WP_001326990.1 | protein YdfV | - |
| AOY52_RS12065 (2504334) | 2504334..2504666 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| AOY52_RS12070 (2505103) | 2505103..2505252 | - | 150 | WP_011443592.1 | protein YdfW | - |
| AOY52_RS12075 (2505325) | 2505325..2506395 | - | 1071 | Protein_2351 | ISNCY family transposase | - |
| AOY52_RS12080 (2506900) | 2506900..2507922 | - | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2466104..2519030 | 52926 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T105444 WP_000323025.1 NZ_CP029328:c2503562-2503275 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T105444 NZ_CP029328:c2503562-2503275 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT105444 WP_000534858.1 NZ_CP029328:c2503801-2503562 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT105444 NZ_CP029328:c2503801-2503562 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|